Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00868 and RBAM_037710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_00868.1.9828.seq
# -bsequence dna-align/RBAM_037710.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00868-RBAM_037710.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00868-RBAM_037710.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00868
# 2: RBAM_037710
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1075
# Identity: 526/1075 (48.9%)
# Similarity: 526/1075 (48.9%)
# Gaps: 371/1075 (34.5%)
# Score: 1090.5
#
#
#=======================================
BSNT_00868 1 ATGGAAATACGGCATCTAAAGACATTTATAACA----ATAGTGGAAAAGG 46
|||||.||..|.|||||.|..|||||| || ||.||.||.||||
RBAM_037710 1 ATGGAGATCAGACATCTTATTACATTT----CAGGCCATTGTAGATAAGG 46
BSNT_00868 47 GAGGATTTACAAAAGC--------AGCTGAATATTTAGGTTATGCCCAAT 88
||.|.|.||||...|| ||||| ||.||..|.||.|
RBAM_037710 47 GAAGCTATACAGGGGCCGCGGCGAAGCTG--------GGATACACGCAGT 88
BSNT_00868 89 CGACCATAACTTCACATATCAAAGATATTGAGCAAGAAATAGGAGGACCC 138
||||.||.||..|.|||||..|.|...||||.||.||.||.||.||..|.
RBAM_037710 89 CGACGATTACGACTCATATTCAGGCGCTTGAACAGGAGATCGGCGGCGCA 138
BSNT_00868 139 TTATTTAATCGTTTTGGGAAGAAAATGCTGT---TAACTGAAG-----TG 180
||||||| || |..||| ||||.|| || .||||||.| .|
RBAM_037710 139 TTATTTA--CG---TACGAA-AAAAGGC-GTCTGAAACTGACGCCTTTAG 181
BSNT_00868 181 GGTGAGTATTTGTTGCCATATGCAAACGAAATGATCAGGATTT------- 223
||.||| |..||.|.||.|..|| || |||||||
RBAM_037710 182 GGAGAG-AGCTGATACCGTTAGC---CG--------AGGATTTACTTTCC 219
BSNT_00868 224 ----CTGAAAAAGTAAAACAAATACAA-----TCAAACGA--TGAACCCA 262
.|||.||..|.|||.|.||.||| || |||| ||||
RBAM_037710 220 GCCCATGACAAGATCAAAAATATGCAAAGCATTC--ACGAGGTGAA---- 263
BSNT_00868 263 TGGGGAATCTTGTT----ATTGGTGCCCCGGAATCTTTAACGGTTTACCG 308
||| |.|.|| ||||..||.|||||.|||||.||..|||.|.|
RBAM_037710 264 --GGG---CGTTTTAAAAATTGCGGCGCCGGAGTCTTTGACCATTTCCAG 308
BSNT_00868 309 TTTACCT----CCAATTATTCACGA----ATT-CAAAAAGCTTTTTCCTA 349
.|| ||.|||| ||| || ||| ||..||| |.|||.|
RBAM_037710 309 ----ACTGGGGCCGATTA-TCA-GAGAATATTCCATGAAG---TATCCGA 349
BSNT_00868 350 AAGTGAAAATTACTTTAAAATCATCG--ACATGCTGG--GAATTAAAAGA 395
|.||.||.||.|..|| .|.||.|| ||||||.|| |||| .||.
RBAM_037710 350 ACGTCAATATCATATT--GAGCAACGGAACATGCGGGCAGAAT---CAGG 394
BSNT_00868 396 TGATCTCCGAAATGGGAAG-------GTGGATTTAGCGTTTCTGTTGGAG 438
|| |||.|.|.||| ||||||.|.||.||| .|||.|
RBAM_037710 395 TG------GAATTAGTAAGCGGCCGTGTGGATATTGCATTT---ATGGTG 435
BSNT_00868 439 TATGAACAAGAGGAAGCTGATTTATATATAGAAAAACTAATAACTGAGCC 488
||| .|.||..||.|.||.||||||...|||
RBAM_037710 436 TAT------------CCGGAGATACAAATGGAAAAATGCATA-------- 465
BSNT_00868 489 AATGA-----TATTGGTATTCCCTA--AACAGCAT--------------- 516
.||.| |||||| | ||| ||||
RBAM_037710 466 CATCATTCTTTATTGG--------AGGAAC-GCATCGTCCTCGTGGCGGG 506
BSNT_00868 517 AAGT-------TGCAAAATACTCCATTTGATGATTTTTATTTTTCATCTG 559
.||| .|.||.|| |||||.||.|.|.|
RBAM_037710 507 CAGTGACGCACCGGAACAT------TTTGACGACTATCA----------- 539
BSNT_00868 560 ATGAAGTG---------ATTTTATATACA---GAACATGGGTGCAGCTAT 597
|..|||.| .|||||| |||| |||.|.||.|||||||||
RBAM_037710 540 ACAAAGCGGCAAGCACTTTTTTAT-TACAAATGAAGAAGGATGCAGCTAT 588
BSNT_00868 598 CGTACTTACTTTGAA-GAGTATATGAAACACCAAGGACTGGTTTCGG--- 643
||.|||...|||||| || |.|.| |..||||.| ||.|.||.|
RBAM_037710 589 CGGACTATGTTTGAACGA-TTTCT----CGTCAAGTA-TGATATCAGTCA 632
BSNT_00868 644 ---AGAATACCTTTGAATTTTGGAGTGTTGAGGCAATTAAGCAGTGCGTT 690
|.|| ||..|.|||||.||||||.|.||.||.|||||||||...||.
RBAM_037710 633 TTTACAA-ACAATGGAATTGTGGAGTATAGAAGCCATTAAGCAGACGGTG 681
BSNT_00868 691 ATGTGCGGTTTAGGAATTT---CGTTATTACCGTTGATCACTGTACAAAA 737
|||.||||..|.|| ||| |||| |||||.|..||.||.|||.||.|
RBAM_037710 682 ATGAGCGGACTCGG--TTTCTCCGTT-TTACCTTATATTACGGTAAAAGA 728
BSNT_00868 738 AGAGTTGAAAGAAAACAAATTAAGTGGATTGATTATGGA---TGAAACAC 784
|| |||.|| |||.|| ||| |||||
RBAM_037710 729 AG------AAGTAA-------AAGCGG---------GGAAGCTGAAA--- 753
BSNT_00868 785 GTATTATAACGCAG--------------GTGG---------CATA----- 806
|||.|...|||| |.|| ||||
RBAM_037710 754 --ATTCTTCAGCAGTCTGAGCCGTTCGAGCGGCTTTATTCTCATATGCTG 801
BSNT_00868 807 -TCATAAA-AAAAGATGGAA--TTCC-------------TTAGCGATGGC 839
|||.||| ||||.||||.| |||| ||.|.| |.||
RBAM_037710 802 GTCAAAAAGAAAAAATGGCAGCTTCCGGCCGCCGAGGCTTTTGTG-TCGC 850
BSNT_00868 840 -------TGAAT-------TTATAAATATAGTAAAAAAACATGCGGAATT 875
|||.| |.|||||||.
RBAM_037710 851 TTGTTCTTGAGTCGTTTGGTGATAAATAA--------------------- 879
BSNT_00868 876 ATGGAAAAGAACTCAGACTTTATAG 900
RBAM_037710 879 ------------------------- 879
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