Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01919 and RBAM_037690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_01919___yjbB.1.9828.seq
# -bsequence dna-align/RBAM_037690___yfmI1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01919___yjbB-RBAM_037690___yfmI1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01919___yjbB-RBAM_037690___yfmI1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01919___yjbB
# 2: RBAM_037690___yfmI1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1422
# Identity: 584/1422 (41.1%)
# Similarity: 584/1422 (41.1%)
# Gaps: 666/1422 (46.8%)
# Score: 977.0
#
#
#=======================================
BSNT_01919___ 1 ---------ATGATAACATTTACAATTAGAGGAAAAAAACGGAGGCGAAA 41
.|||| ||||||| |
RBAM_037690__ 1 ATGTTTTGTCTGAT-------------------------CGGAGGC---A 22
BSNT_01919___ 42 TACGATTCAATTTCTGCATAACAAAAATGTTTT--------------TGC 77
| ||| |||.|||| |...|||.||| .||
RBAM_037690__ 23 T----TTC--TTTTTGCA----ACGGATGGTTTGCTCCGATAAAAAGCGC 62
BSNT_01919___ 78 ACT-ATTGCTGTCTCAATCTTTTCAATCTTTAGCAGGAGTCCTCGTCACA 126
.|| ||||..| .||||.| ||.||.|.
RBAM_037690__ 63 GCTGATTGGGG------------AAATCAT------------TCCTCCCG 88
BSNT_01919___ 127 ATCGTTTTAATGGTCCG---------GGTCTATCAAATGACTGACTCTGT 167
|||| ||.|| || |||.|||.| ||||
RBAM_037690__ 89 ATCG----AAGGG--CGAAAGCGAACGGTTTATTA----------TCTG- 121
BSNT_01919___ 168 TTTTTTGGCGGGCCTTATTTTATCGTTCATGTCGTTTGCGAGTATAGCAG 217
.||||| ||...|.|||||| |||||||.|
RBAM_037690__ 122 -----CGGCGG-----ATCAGACCGTTCA----GTTTGCGGG-------- 149
BSNT_01919___ 218 CAAGCTTTTGCGTCTCTCCGGTGCTTCGCATTCTCG-GTTTTAAAAAGGT 266
.|| |||||||.|..||.| |||..|.| |||||
RBAM_037690__ 150 -------GTG-GTCTCTCGGCGGCGT--CATCATAGCGTTTT-------- 181
BSNT_01919___ 267 GCTTGTGGGAGCGAATCTGCTGAGAGCGGTCTTTACAATCCTGATGGCAT 316
||||| ||||||| .||||| ||||
RBAM_037690__ 182 -----TGGGA-----------GAGAGCG----ATACAA---TGAT----- 203
BSNT_01919___ 317 ACAGCGTCACTCATCACGGACAGGCATTCTTTTGGATTACGCTGCTGTTT 366
||||||| |.||
RBAM_037690__ 204 ----CGTCACT-----------GTCA------------------------ 214
BSNT_01919___ 367 GTGTT-TTGTTTTTCCTTCGCGGGCGCTTTTTTTCAGCCGGCAAGATTTG 415
|||| |||.||| ||||| .|||| .||||..|||
RBAM_037690__ 215 -TGTTATTGGTTT--CTTCG---------GTTTT----GGGCATCATT-- 246
BSNT_01919___ 416 CGCTGCTGCCGATTATTGTTCCAAAGAAGCAATATGTAAAAGCGAATGGT 465
||| .||.||| |.||| ||.|| ||
RBAM_037690__ 247 -----CTG------TTTCTTC------------AAGTA----CGCAT-GT 268
BSNT_01919___ 466 GTGATCTCTCTCTCGAATCAATTATTCTTAACAGCAGGCTGGGGCCTTGG 515
|||..| || .||||||.|.|||
RBAM_037690__ 269 GTGCGC-------CG---------------GCAGCAGTCAGGG------- 289
BSNT_01919___ 516 AGGCCTTCTGACGTACGCCGTCCCTTTTGAACTCA-TTGTCGGC--GCTG 562
.|||| .|||.||||| || .|| |||| ||.|
RBAM_037690__ 290 ---------AACGT-----TTCCTTTTTG----CAGATG-CGGCAAGCGG 320
BSNT_01919___ 563 CTATTTGCCTGTTTGTTCTATCGGGAGCTTCCATCAGTGTGCTGCATGTA 612
|| ||| ||.||.||
RBAM_037690__ 321 CT--------------------GGG-----------------TGTATTTA 333
BSNT_01919___ 613 AATGAAGAAGAGGCTGT-AGGAACTGCTGAAACAGCATCTGCCAGAAGTA 661
|.| ||.|| |||||||
RBAM_037690__ 334 --------------TTTCAGCAA------AAACAGC-------------- 349
BSNT_01919___ 662 TATGGAAGGATTTAATGATCATCCCTATTGTAAGAGACATTACTGTAATG 711
|| |||.|| .|||| |||.|||
RBAM_037690__ 350 --TG--AGGGTT-----CTCAT---------------------TGTGATG 369
BSNT_01919___ 712 GACATGATAGAAGCTTTGGCGGGTTCCGTATGGTCATCTGCTAT-TCTCC 760
||..||||.|||.|.|.|||.||.....||||| |||.|.|.| |.|||
RBAM_037690__ 370 GATGTGATCGAATCGTGGGCAGGCATGATATGG--ATCGGTTCTGTGTCC 417
BSNT_01919___ 761 TCGCATTTAC-----TGC--GGCTGTTTTGCATGAAACAGAGGTGTGGTG 803
||.|| ||| |.| |||.|.|||.||..|||||..|||||
RBAM_037690__ 418 -----TTAACTTATGTGCATGAC-GTTCTTCATAAAGGAGAGGCTTGGTG 461
BSNT_01919___ 804 GGGG-ATGTTTAACGCTTCCTATTTTATAGGCGCAATTGTCGGCAGTGTG 852
|||| ||| |.||||....|||||.|..|||..|.||..|||||.|..||
RBAM_037690__ 462 GGGGTATG-TCAACGGAGTCTATTATGCAGGGACGATGATCGGCGGACTG 510
BSNT_01919___ 853 ATTGCCATTCGTTTTTCTTCTTTTTTTGAGCGGAATATGGGCTATGCCAT 902
|| ||| .|||..|.||| ||..
RBAM_037690__ 511 AT---CAT--------------------------CTATAAGTTAT-CCGG 530
BSNT_01919___ 903 TATG-TTCAGC-----------TCGCTTGTAATGTCGGCGCTGACCCTT- 939
||.| |||||| .|||||.|..||.||| ||.||||
RBAM_037690__ 531 TAAGTTTCAGCATCATCTCATTCCGCTTATGCTGACGG----GAGCCTTG 576
BSNT_01919___ 940 ---------TTGTT----TTCATTT---------TCTCCAGTCCCAT--- 964
.|||| ||.|||| ||.|.||..||.|
RBAM_037690__ 577 GCATATGGAATGTTCACGTTTATTTATGGGTTGATCACAAGCGCCGTTAC 626
BSNT_01919___ 965 -----TTTTATGCGCTCTGGCTTGTGCTG-CAATGGGGCC----TTTTTA 1004
|||| |||| |||||| ..|||||||| |.|.||
RBAM_037690__ 627 GGCCCTTTT------TCTG----GTGCTGTGTATGGGGCCGGCTTGTGTA 666
BSNT_01919___ 1005 TCAGGTGCGTGATATTTGCCAGGAAACCATGCTGCAGGAGGTTATTCCCG 1054
| |.||.|||.|....||||||||..|.||.||..| ..||.||
RBAM_037690__ 667 T----TACGAGATCTCACGCAGGAAACATTACTCCAAAA----CATCACG 708
BSNT_01919___ 1055 AGCAGAAACGAATCGGAATCATGGCTGCAAAAAAT-----GCGATTTTGA 1099
| |.||||.|| ||.||.| |||.|.|| |||| ||
RBAM_037690__ 709 A-CCGAAAAGA--------CACGGGT-CAATATATTAGCGGCGA----GA 744
BSNT_01919___ 1100 CTC--CTT--GGTCAGGCGTC------ACCTACTCCATTAT------GGG 1133
|| ||| |.|||| .|| |..|..|||||||| |||
RBAM_037690__ 745 -TCAGCTTTAGTTCAG--TTCATTTTTATGTTTTCCATTATCGGAACGGG 791
BSNT_01919___ 1134 GCTAGTGGCTGATG----CTGCTGGTGCGAAAATAGCTTTTATCGCGGCT 1179
|.|..|..|.|||| |.|| ||||| .|||||
RBAM_037690__ 792 GGTCATCTCGGATGTATTCGGC--GTGCG--------GTTTAT------- 824
BSNT_01919___ 1180 GCTGCATTATATATCATGACATTTCTGATTGCACTGGCGCAG--CCCCGT 1227
|||||| |||||||| |.|| |
RBAM_037690__ 825 ------TTATAT----------------------TGGCGCAGGTCTCC-T 845
BSNT_01919___ 1228 CTGGTTCATTACAG----------------------GCG-----AGAAAA 1250
||..||.|||.|.| ||| ||||.|
RBAM_037690__ 846 CTTATTAATTTCGGCTTTTATCGGATTTTCTCAGCTGCGAATGAAGAAGA 895
BSNT_01919___ 1251 TCGAGTTCAATGA--------- 1263
| .||.|||.|.
RBAM_037690__ 896 T--GGTACAAAGCCGCATGTAG 915
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