Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00890 and RBAM_037640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_00890.1.9828.seq
# -bsequence dna-align/RBAM_037640.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00890-RBAM_037640.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00890-RBAM_037640.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00890
# 2: RBAM_037640
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 308/1039 (29.6%)
# Similarity: 308/1039 (29.6%)
# Gaps: 638/1039 (61.4%)
# Score: 594.5
#
#
#=======================================
BSNT_00890 0 -------------------------------------------------- 0
RBAM_037640 1 GTGTCTATCCTGGAAAAACACGCTGCTCTTTCTTATTCACGAACAACAGG 50
BSNT_00890 0 -------------------------------------------------- 0
RBAM_037640 51 CATTTGGCTTGTGCTGACAGGAGCTATCTTATGGGGGGTCTCGGGAACGG 100
BSNT_00890 0 -------------------------------------------------- 0
RBAM_037640 101 TTGCCCAGTATCTGTTCCAGCACCGCCATTTTAATACAGAATGGCTGACT 150
BSNT_00890 0 -------------------------------------------------- 0
RBAM_037640 151 TCAGTGCGCCTTCTGGTGTCAGGGGCGCTTCTGCTCGGCATCGCGTACCG 200
BSNT_00890 0 -------------------------------------------------- 0
RBAM_037640 201 CAAAGAAAAAGGACGGATATGGGCTGTTTGGAAAGACAGACGGGACAGAA 250
BSNT_00890 1 -----------------------------TTGTTAACAAATG--GTTCAA 19
.||||| | ||||||
RBAM_037640 251 TTCCCCTTCTTTTATTCGGGATTTTCGGAATGTTA------GGCGTTCAA 294
BSNT_00890 20 TATCTCAACT---------TTCAGTGC-------CGGCAGCTG------- 46
||...|.||| ||.|||.| ||||.||||
RBAM_037640 295 TACACCTACTTCGCGGCAATTGAGTACGGCAACGCGGCCGCTGCTACCGT 344
BSNT_00890 47 ----CAGTAGTATGGGG--AG---------------TTTTATCAGGATTC 75
||||| |.|.||| || |||||.| |||||
RBAM_037640 345 TCTTCAGTA-TTTAGGGCCAGCGATCATTACATGCTTTTTAGC--GATTC 391
BSNT_00890 76 GCG-----------------GC-----AGCTTTTTATACT-------TTA 96
||| || ||||| || |||
RBAM_037640 392 GCGCAAAGAGAATTCCTTCAGCAAAAGAGCTT------CTGGCCGTCTTA 435
BSNT_00890 97 TATGCCGTTG-------GTTTATT--------------AAAT-----AAA 120
|..||.|||| .||.||| .||| ||.
RBAM_037640 436 TTGGCGGTTGCCGGCACATTCATTTTGGTCACGCACGGTAATGTCGGAAG 485
BSNT_00890 121 TTTG-----ATTC--TCTTGTCGTTGTAGGTTGGGCTATGATTATTGGCG 163
..|| ||.| |||.|.|||..| |||||..||.|.| |.||||
RBAM_037640 486 CCTGTCCATATCCGGTCTGGCCGTCTT---TTGGGGCATCAGT-TCGGCG 531
BSNT_00890 164 GTTTTGCATTGG-GTTTTA-----TCCATCCGC---------------CA 192
||||||.||| |||||| |.||.|||| .|
RBAM_037640 532 --TTTGCACTGGCGTTTTACACCCTTCAGCCGCATCGTCTGCTGAAGAAA 579
BSNT_00890 193 TGGCAACTGGATTTTCAACGATTA--------------ACTGCTGA--GG 226
||| ||| ||..|.|||| | |||||| ||
RBAM_037640 580 TGG-----GGA---TCGGCCATTATTGTCGGATGGGGCA-TGCTGATCGG 620
BSNT_00890 227 CGTA---------------------------------------------- 230
||.|
RBAM_037640 621 CGGAGCCGCCCTCAGCTTGATCCGCCCGCCCTGGAAATTTGAAGGCGAGT 670
BSNT_00890 231 ----------TGCATAT------ATTTTATTTGTGAT-ATTATTTGGAAC 263
||||||| |||.|.|||.|.|| ||| ||.|||||
RBAM_037640 671 GGTCCTTTCCTGCATATGCCGCGATTGTGTTTATCATCATT-TTCGGAAC 719
BSNT_00890 264 AATGATTGCGTTCTGGTTCTTCATAAAAAGCTTGGAAAGCC-----TTTC 308
..|.||.||.|| ||.||..|| ||||||||||| |.||
RBAM_037640 720 GCTCATCGCTTT----TTATTGCTA-----CTTGGAAAGCCTGAAATATC 760
BSNT_00890 309 ----TCCCAAAGAAACAAGCCTATTAGGCAGTTTAGAACCTCTATCCGCT 354
|.||...|||||.|||||..|.|.|.||..|||.||.||.||.||.
RBAM_037640 761 TGAGTGCCTCTGAAACCAGCCTGCTCGCCTGTGCAGAGCCGCTGTCGGCA 810
BSNT_00890 355 GTTGTAACAACTGTCGTTTGGTTAAAAGCGCCATTTGGTTCTTTTC---- 400
|.|.|...|.||||..|.|| ||..||| ||||..|||
RBAM_037640 811 GCTTTTTTAGCTGTTATCTG-------GCTGCAT---GTTCCCTTCGGAA 850
BSNT_00890 401 ------AATGGATTGGTGCTATTTGT-ATTATAG---GAATAACTTTAAT 440
|||||.|.|||.|| |||.| |||.||| ..||..|||||.|
RBAM_037640 851 TATCAGAATGGCTGGGTACT-TTTCTGATTTTAGCCACCATCGCTTTATT 899
BSNT_00890 441 ATTGGCTTT-------AAATAAAGAGCCTTCTGTGCAGAGTGAAAAGTCG 483
|| ||.| ||||||
RBAM_037640 900 AT---CTATCAAGAAAAAATAA---------------------------- 918
BSNT_00890 484 ATATTAAAGATTAGGAATCATGCAAATCGGGATATATAG 522
RBAM_037640 918 --------------------------------------- 918
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