Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06224 and RBAM_037600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:41
# Commandline: needle
# -asequence dna-align/BSNT_06224___yybS.1.9828.seq
# -bsequence dna-align/RBAM_037600___yybS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06224___yybS-RBAM_037600___yybS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06224___yybS-RBAM_037600___yybS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06224___yybS
# 2: RBAM_037600___yybS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 972
# Identity: 658/972 (67.7%)
# Similarity: 658/972 (67.7%)
# Gaps: 78/972 ( 8.0%)
# Score: 2063.0
#
#
#=======================================
BSNT_06224___ 1 GTGAAACAAACGAGAGCTTTAATGGAAGGTGCTATTTTAATCAGTCTGTT 50
||||||.|.||.||.|||.||||.|||||.||.|||||.||||||.|.||
RBAM_037600__ 1 GTGAAAAATACAAGGGCTCTAATAGAAGGCGCCATTTTGATCAGTATTTT 50
BSNT_06224___ 51 TGCGATCATTACGCTTCTGGTCGTTTATGTTCCTGTGATTGGAACAATTC 100
|||.||||||.|.|||.|||||||.||..|.|||.|..|.||..||||||
RBAM_037600__ 51 TGCAATCATTTCCCTTTTGGTCGTGTACCTCCCTTTACTGGGGGCAATTC 100
BSNT_06224___ 101 TGTTATTTGCACTGCCGCTGCCAATGA-TCTTGTATACGATCAGACATGG 149
|..|.|||||..||||||||||.||.| |||| ||.||.||..|.||.||
RBAM_037600__ 101 TTCTCTTTGCTTTGCCGCTGCCGATCATTCTT-TACACCATTCGGCACGG 149
BSNT_06224___ 150 ATTGAAGCTAGGGATATGGATGGGCGC-TGTCAGTCTTCCGGTTGTTTTT 198
..|||||...|||.|||||||||| || ||.|||.|||||.||....|||
RBAM_037600__ 150 TCTGAAGTCCGGGGTATGGATGGG-GCTTGCCAGCCTTCCTGTCAGCTTT 198
BSNT_06224___ 199 ATTGTCGGGTCCTTTAACGGGCTTATTGTAGCTTTTATGTCAGCTTGCGC 248
|||||.||.||.||||.||||||||..|..|||||||.|.|.||.||..|
RBAM_037600__ 199 ATTGTAGGTTCGTTTACCGGGCTTACAGGCGCTTTTACGGCGGCCTGTAC 248
BSNT_06224___ 249 CGGCATTGCCATGGGACATTTTTTCAAAAGGAAAGAGCCCGGGCACGCCA 298
.||.||.|||||||||.|||.|||.||||.||||.|||||||..|.||..
RBAM_037600__ 249 GGGAATCGCCATGGGATATTATTTTAAAAAGAAACAGCCCGGCTATGCGG 298
BSNT_06224___ 299 TTATTTCGGGCGCTCTTATTTATAT-GCTTA-GTATT-------GTCTTC 339
||..|.|.||||| ||| ||.|| ||.|| |||.|.
RBAM_037600__ 299 TTGCTGCCGGCGC---------TATGGCGTATGTGTTGTGCGGCGTCGTT 339
BSNT_06224___ 340 TATTTTGTGATAAGCATTCAGTTTTTGGGTATCAATATCATTGATGAGGC 389
|.|||||||.|.|||||...||||.|...|||.|||.|..|||||....|
RBAM_037600__ 340 TTTTTTGTGGTCAGCATCGTGTTTCTTAATATGAATGTGGTTGATACCAC 389
BSNT_06224___ 390 GATGACACAATACCGGCAATC----TCTTGATATGGTAGAAAC--TGTAG 433
.|||.|.||....|||.|.|| |||| |.|.|||||| |||
RBAM_037600__ 390 CATGTCCCAGCTTCGGGAGTCGCTGTCTT----TAGCAGAAACCATGT-- 433
BSNT_06224___ 434 CGAAGCAG-TCGGGCAATGCTGGA---CAGTTTGAGAAGCAATTAAAACT 479
|.||.||| |||| |...||| |||||.|.||||||..|.||.||
RBAM_037600__ 434 CAAAACAGCTCGG----TTACGGAGACCAGTTCGGGAAGCAGATCAAGCT 479
BSNT_06224___ 480 GATGGAAGAACAATTGGGTATCGTTCAATATCTTTTTCCAACAGCTATTG 529
|||||||...||..||.|.|..|||||||||||||||||.||| |
RBAM_037600__ 480 GATGGAAAGTCAGCTGAGCACGGTTCAATATCTTTTTCCGACA------G 523
BSNT_06224___ 530 TGATGGTA------GGAGTTATTTTTTCTTTCCTCAGTTACCTTATCGCT 573
||.|.||| ||..|..|||||||||||||||||||...|||.||.
RBAM_037600__ 524 TGCTCGTATTGACCGGCATCGTTTTTTCTTTCCTCAGTTATGCTATGGCA 573
BSNT_06224___ 574 AAGCCGCTCTTAAGGCGATTCTCCCCCGATATTCCTAATCTAAAGCCTTT 623
|.||||||.|||.|||||||.|||||.|||.||||.||..|.||||||||
RBAM_037600__ 574 AGGCCGCTTTTACGGCGATTTTCCCCTGATCTTCCGAAGATGAAGCCTTT 623
BSNT_06224___ 624 TAGAGAGTTGAAGTTTCCGCAAAGTGTTGTAGTACTGTATTTGATTATTG 673
|||||||.|.||..|.||||||||.|||||..|.||||||| ||||||
RBAM_037600__ 624 TAGAGAGCTCAAACTCCCGCAAAGCGTTGTCATTCTGTATT---TTATTG 670
BSNT_06224___ 674 TCATGCTTTCA---TTTTTGCCTTTAGAAAAAGGCCAAATGCTGTACTCT 720
|.|.|.|.|.| |||.||||||||||||||||.||.||||||||.||.
RBAM_037600__ 671 TGACGATATTAGGGTTTCTGCCTTTAGAAAAAGGGCATATGCTGTATTCG 720
BSNT_06224___ 721 ATCGCTTTAAATGGGGAGTTTATACTCGGGTTTCTGATTTTCATCCAAGG 770
.|..|.||.|||||||..|||||.|||.|.||.|||||||..||.|||||
RBAM_037600__ 721 GTTTCATTGAATGGGGGATTTATTCTCAGCTTGCTGATTTGTATTCAAGG 770
BSNT_06224___ 771 TTTATCATTTATCTTTTTCTATTGCCATAAGAAA-CAATAT-CCAAAGGC 818
.|||.|.|||||.||||||||||||| ..|||| ..|.|| ||.||.||
RBAM_037600__ 771 ATTAGCGTTTATTTTTTTCTATTGCC--GCGAAATGGAGATGCCGAAAGC 818
BSNT_06224___ 819 TGCGGCTGTGATT-GCTGTCATACTTGGGTTTGTGC---ATCCGGTCTTC 864
.|...|||| ||| ||..|..|.||.||| |||| .||||.|..||
RBAM_037600__ 819 CGTTCCTGT-ATTAGCAATTGTGCTGGGG---GTGCTTTTTCCGCTTATC 864
BSNT_06224___ 865 ATGGCGGCCATTCGCATTTTAGGCGTTTTAGATATGGGCTTTCATATAAG 914
.||.|.|....||.|.|.||||||.|..|.||.||.||||||.|.|||||
RBAM_037600__ 865 TTGTCCGTGTATCTCCTCTTAGGCATCATTGACATAGGCTTTAACATAAG 914
BSNT_06224___ 915 GAATAAGGTGAAGTGA------ 930
.||||||||||.|.||
RBAM_037600__ 915 AAATAAGGTGACGCGAAATTGA 936
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