Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06222 and RBAM_037580

See Amino acid alignment / Visit BSNT_06222 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:40
# Commandline: needle
#    -asequence dna-align/BSNT_06222___rplI.1.9828.seq
#    -bsequence dna-align/RBAM_037580___rplI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06222___rplI-RBAM_037580___rplI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06222___rplI-RBAM_037580___rplI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06222___rplI
# 2: RBAM_037580___rplI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 459
# Identity:     375/459 (81.7%)
# Similarity:   375/459 (81.7%)
# Gaps:          18/459 ( 3.9%)
# Score: 1545.0
# 
#
#=======================================

BSNT_06222___      1 ATGAAGGTTATTTTCTTACAAGATGTAAAAGGAAAAGGAAAAAAAGGCGA     50
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
RBAM_037580__      1 ATGAAGGTTATTTTCTTACAAGATGTAAAAGGTAAAGGAAAAAAAGGCGA     50

BSNT_06222___     51 AGTCAAAAACGTAGCAGACGGTTATGCGCATAACTTTCTAATTAAAAAAG    100
                     |.|.|||||||||||||||||||||||.|||||||||||.||||||||||
RBAM_037580__     51 AATGAAAAACGTAGCAGACGGTTATGCACATAACTTTCTCATTAAAAAAG    100

BSNT_06222___    101 GCCTCGCGGTTGAAGCGAACGCTTCAAACATCAGCGCGCTAAACGGACA-    149
                     |||||||.||.|||||.||.||..|||||||||||||..|.||.||||| 
RBAM_037580__    101 GCCTCGCTGTCGAAGCAAATGCGACAAACATCAGCGCATTGAAAGGACAG    150

BSNT_06222___    150 AAAGCAGAAAGAGAAAAAAGAAGCCATTGCTGAGCTTGAGCAGGCTAAGA    199
                     |||| |.|||||||||||||||||.|||||.||||||||       ||||
RBAM_037580__    151 AAAG-AAAAAGAGAAAAAAGAAGCGATTGCCGAGCTTGA-------AAGA    192

BSNT_06222___    200 GC-------TTGAAAGAGACATTAGAAAAACTGACTGTTGAGCTTAGCGC    242
                     ||       ||||||||.||..|.|||.|.||||||||||||||.||.||
RBAM_037580__    193 GCGAAAGATTTGAAAGAAACGCTTGAACAGCTGACTGTTGAGCTGAGTGC    242

BSNT_06222___    243 AAAATCAGGTGAGGGCGGCCGTTTATTTGGTTCAGTGACAAGCAAGCAAA    292
                     .|||||.|||||.|||||||||.||||.||.||.||.||||||||.||.|
RBAM_037580__    243 CAAATCCGGTGAAGGCGGCCGTCTATTCGGATCTGTCACAAGCAAACAGA    292

BSNT_06222___    293 TTACTGAACAGCTCCAAAAAGAC-CATAACATTAAAGTAGATAAGCGGAA    341
                     ||.|.|||..|||.|||||| || |||||.||||||||.|||||.|||||
RBAM_037580__    293 TTGCAGAAGCGCTGCAAAAA-ACGCATAAGATTAAAGTGGATAAACGGAA    341

BSNT_06222___    342 GCTTGAACTGCCGGACGGCATTCGTGCATTAGGATATACGAACGTGCCTG    391
                     .||.||.||.|..|||||.||.||..||.|.||||||||.|||||.||||
RBAM_037580__    342 ACTGGAGCTCCAAGACGGTATCCGCACACTGGGATATACAAACGTTCCTG    391

BSNT_06222___    392 TGAAGCTGCATCCTGAAGTGCAGGCTGTGTTAAAGGTACATGTAAAAGAA    441
                     |.||||||||.||||||||.|||||||||.|.|||||.||.|||||||||
RBAM_037580__    392 TAAAGCTGCACCCTGAAGTTCAGGCTGTGCTGAAGGTTCACGTAAAAGAA    441

BSNT_06222___    442 GAAGCTTAA    450
                     |||||.|||
RBAM_037580__    442 GAAGCGTAA    450


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