Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04032 and RBAM_037570
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_04032.1.9828.seq
# -bsequence dna-align/RBAM_037570.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04032-RBAM_037570.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04032-RBAM_037570.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04032
# 2: RBAM_037570
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity: 363/836 (43.4%)
# Similarity: 363/836 (43.4%)
# Gaps: 358/836 (42.8%)
# Score: 606.5
#
#
#=======================================
BSNT_04032 1 ----ATGCTGAC--------------AAAAGCAGAGGCACTGGCCCATT- 31
.|||.||| |||.|..|||| .||...||||
RBAM_037570 1 ATGTCTGCAGACGGCGCAGCGCAAGAAAATGATGAGG--TTGTTTCATTT 48
BSNT_04032 32 -CCGTCATATACC-----GCA------AGAACAGCA--------GATTTG 61
|..|||| |||| ||| |..|||.|| |||.||
RBAM_037570 49 CCTATCAT-TACCATATTGCATATTATATTACATCATAACGAAGGATGTG 97
BSNT_04032 62 -----ATAAA-----------GTCAAAGAGA-------AATCCGAGGAAT 88
||.|| .|.|||.|.| ||||||..||||
RBAM_037570 98 TCGGTATGAAACGATTTTTTTCTGAAACATATTTTCATAATCCGGAGAAT 147
BSNT_04032 89 TAA------------CACTA-------ATCGGCAAGGGAA--------GA 111
.|| ||||| |||||..|.|||| ||
RBAM_037570 148 AAAAAGGCACTGGAGCACTATCCGCTGATCGGAGACGGAAAAGACGGGGA 197
BSNT_04032 112 AGCGCCTATGTGTTTGCCTTAACAGAAGGCGGTCGAAAAATGGCGCTGAA 161
| |.|||| .|||||.|.|| |.|.|||| ||..||
RBAM_037570 198 A--GTCTAT-CGTTTGACATA------------CAACAAAT---GCGTAA 229
BSNT_04032 162 AGTATTT-TTTCCGGAATATCGAGCGACAGCAGTCAAAGAA-------GC 203
|.||||| ||| .|||.||.|||| |..||||| ||
RBAM_037570 230 AATATTTCTTT------GATCAAGAGACA----TGTAAGAAGGAATTGGC 269
BSNT_04032 204 AGCGATCTATGAAAAATTAGCC------GGGTCCGC----ATTCTATCCT 243
||| .|.|||.| || ||.|||.| |||| |..
RBAM_037570 270 AGC-----TTTAAAGA----CCGGACAAGGTTCCCCGGTGATTC---CAA 307
BSNT_04032 244 GACATTTACGAA-ACTGGCGATTCATT-TATTCTCATGGAATATATTAAA 291
||| |.||.||| || ||.|| ||.|| ||||.|.||||||||..|..||
RBAM_037570 308 GAC-TGTATGAATAC-GGAGA-TCGTTATATTGTGATGGAATACGTCCAA 354
BSNT_04032 292 GGTGAAACCTTTTATAACTG---TCTGAAGAAAGGCATTGCAATCAGTGA 338
|| .||||.|..|..|.| |.|.||.|||
RBAM_037570 355 GG---CACCTCTCTTGCCCGCCATATCAAAAAA----------------- 384
BSNT_04032 339 TGACATGATTCAGCAGGTTGAAGAAGCGCTTTCTGACGCCCGGGCAGCCG 388
|||.||.|.||.| |.|.||..|.
RBAM_037570 385 -------------------GAAAAATCCCTGT--------CCGTCAAACT 407
BSNT_04032 389 GACTGAACCCGTCAGATATTCATTTGCGAAATCTGAT------ATTGACA 432
||||| |.||||| ||| ||||.||.| ||| |.|
RBAM_037570 408 GACTG-------CTGATAT---TTT---AAATATGCTGGATGAATT-AAA 443
BSNT_04032 433 GAAACCGGGGCGGTGCGGGTGATTGATGTTGCGAGATTTGA-GCAAACAA 481
|||| ||.|.|.||.|.||||..|| || |.|
RBAM_037570 444 GAAA-----------------ATCGGTTTTACCAGATGGGATGC---CGA 473
BSNT_04032 482 AAACATGCACGCAGTGGGACGACTTAA--AATCCGCATATCATGCACTCT 529
||.||.||| ||.|..|| |.|| |||.|| |||.|||
RBAM_037570 474 AATCAGGCA--CATTCTGA----TCAATGAATACG--------GCAATCT 509
BSNT_04032 530 ACAAAAAACCGATATTCCCCA-AAAAGA-----TTCCG---------GGT 564
..||...|.||| ||| |||||| ||||| |||
RBAM_037570 510 TAAAGTCATCGA------CCATAAAAGAGCTTTTTCCGCCATTACCCGGT 553
BSNT_04032 565 TT------------TT-----GGCTGGA----------------GATCAT 581
|| || |.||||| |||
RBAM_037570 554 TTCCCGTAAAACTATTAAAAGGACTGGACAAATACGGCTTGGCGGAT--- 600
BSNT_04032 582 CGCATTTTT-----ATATAAGAAAGATT----------GGTTTC----AA 612
|..||||| .||||| |||.||| .|||.| ||
RBAM_037570 601 -GAGTTTTTGAACACTATAA-AAAAATTAAATCCGTCACGTTACCTGGAA 648
BSNT_04032 613 AAGCATTTCGCACAGCGGAAAAGAAAATATTCTTAA 648
..||| ..|||||| .|.||
RBAM_037570 649 TGGCA-GCCGCACA-TGTAA---------------- 666
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