Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04493 and RBAM_037550

See Amino acid alignment / Visit BSNT_04493 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:00
# Commandline: needle
#    -asequence dna-align/BSNT_04493___ytcC.1.9828.seq
#    -bsequence dna-align/RBAM_037550.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04493___ytcC-RBAM_037550.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04493___ytcC-RBAM_037550.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04493___ytcC
# 2: RBAM_037550
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1688
# Identity:     680/1688 (40.3%)
# Similarity:   680/1688 (40.3%)
# Gaps:         832/1688 (49.3%)
# Score: 1122.5
# 
#
#=======================================

BSNT_04493___      1 ATGAAGC-------TTGCCTT----TATCTGTA-------CAGA------     26
                     ||||| |       ||.||.|    ||||.|||       ||||      
RBAM_037550        1 ATGAA-CAAGACATTTTCCGTCCCCTATCCGTATATGATCCAGACGCTTG     49

BSNT_04493___     27 AAAGCTGC--CG----------GCGCCCGC------------------AG     46
                     |.||||.|  ||          ||||||||                  ||
RBAM_037550       50 ACAGCTACTACGGGGTCAAAACGCGCCCGCAAAAACAGAAAGCCATAAAG     99

BSNT_04493___     47 TACGCGG----------------------CGGCGCTATTC-------AAA     67
                      ||.|.|                      ||.||.|||.|       |||
RBAM_037550      100 -ACACAGATGAAACATGCAGATCAAATTCCGCCGGTATACAGGAAAAAAA    148

BSNT_04493___     68 TGA------------TGATTGACGGTGTCACGCCCTATTTCAGCAGCAGG    105
                     .||            ||||      ||.||||     |||       .||
RBAM_037550      149 AGAAGTTATCCATTTTGAT------TGCCACG-----TTT-------TGG    180

BSNT_04493___    106 TACGACCTGACCA------TTTTTTCAA-------TAGAAGATCCATCGC    142
                     .||.|||.|..||      .|||.||||       ||.||       |||
RBAM_037550      181 GACTACCCGCACACGGGCGGTTTATCAAACTATATTAAAA-------CGC    223

BSNT_04493___    143 T----------CCCAAAAAGAGA-AACAAAAGACGG-----------CGT    170
                     |          |..||||||||| ..||.|||..||           |.|
RBAM_037550      224 TTAGTGAAGGCCTGAAAAAGAGAGGTCATAAGGTGGATGTCATATCCCCT    273

BSNT_04493___    171 ACAT-TATATCCGTCTGC-----CAAAAGAACATTACCGCG--AGGCGGT    212
                     | || |.|.||||||.||     .||||||     ||.|||  .|||.||
RBAM_037550      274 A-ATCTGTTTCCGTCCGCACAGGTAAAAGA-----ACTGCGGACGGCTGT    317

BSNT_04493___    213 AG--CCG-------AAGAGCTGCGAGCCTCTTCCTTT-------GATCT-    245
                     .|  |||       ||||            ||.||||       |||.| 
RBAM_037550      318 TGTTCCGAAATTAAAAGA------------TTTCTTTAAAGACAGATATG    355

BSNT_04493___    246 ----------CATTCATGTGTTCAACAGGCCTTTAAAT----GTC---TC    278
                               |..||||.|.||.||         ||||    |.|   |.
RBAM_037550      356 GGGATTATAACGATCATATTTTGAA---------AAATAATCGGCTGATG    396

BSNT_04493___    279 TTTATATA----AAAAAGCCTCACCAAACA--------GCAAGAT-----    311
                     ||||||||    .|||.||.|||  |||.|        |.|||||     
RBAM_037550      397 TTTATATACGAGCAAATGCTTCA--AAAGATTCATTTGGAAAGATATGAT    444

BSNT_04493___    312 -CGTTCTGAGCCTGCATAA--------------CGAAATGTT-------T    339
                      .||||    |..||..||              |.|.|||||       |
RBAM_037550      445 GTGTTC----CACGCTCAAGATTTATTTACAGCCAATATGTTAGGCAGGT    490

BSNT_04493___    340 TCA--GAAA-----AAAAAATGACCTT-----------CGCGCAAGG---    368
                     |||  .|||     |||||   |||||           | ||||.||   
RBAM_037550      491 TCAATCAAATCTATAAAAA---ACCTTTATTTTTCACAC-CGCATGGCAT    536

BSNT_04493___    369 ----------AAAAGAAGTACTCGACAATGTCTCCATGATCACAA-----    403
                               ||.|||..||      |||.|| .|||..|.|.||     
RBAM_037550      537 GTTTACTTTCAACAGACTTA------AATTTC-ACATCTTTAAAAAAGGC    579

BSNT_04493___    404 -CTGT----GAGCGAATTTATT---AAAC----------AAACCGTCATT    435
                      |.||    |||   |||||||   ||||          |||  |.||||
RBAM_037550      580 TCGGTAGAAGAG---ATTTATTATAAAACATTAGAGATGAAA--GCCATT    624

BSNT_04493___    436 GA-------------------------------ACGTTTC----------    444
                     ||                               |||||.|          
RBAM_037550      625 GAATACGCAGATCGCCTGATTATTATCAGCGATACGTTCCGCAGCCCCCT    674

BSNT_04493___    445 CCTGAAGC-------------CGAGGACATCACAAAAGTTGTGTATTCCG    481
                     |.||||||             .||.|||||.||||               
RBAM_037550      675 CATGAAGCTCGGAGCCGAACAGGAAGACATGACAA---------------    709

BSNT_04493___    482 GCGTTGAT----TTAAACTCTTATCCGCCCGTCTGGACGATG-AAAGGCT    526
                      ||.||||    ..||.|..||              |||||| |||..| 
RBAM_037550      710 -CGGTGATCACAGGAATCGATT--------------ACGATGCAAAAAC-    743

BSNT_04493___    527 CGGCTG--TCAGAAAAAC----ATACCGGAAAAAATACG-----------    559
                     .|||.|  ..||||||||    .|||||  |||||||.|           
RBAM_037550      744 AGGCGGGAAAAGAAAAACCCCGTTACCG--AAAAATAAGATCATCATCTC    791

BSNT_04493___    560 --GTATTG-AAGATAAAAAAGTTATTTTATTCGCCGGCCGCTTAAGCCCG    606
                       |||||| ||||                            |||.|||||
RBAM_037550      792 GTGTATTGCAAGA----------------------------TTAGGCCCG    813

BSNT_04493___    607 ACAAAAGGACCTCA------------------CCTTCTC----ATTCACA    634
                     |.||||||   |||                  |||| ||    ||||   
RBAM_037550      814 AGAAAAGG---TCACAAATATTTACTGGACGCCCTT-TCGAGAATTC---    856

BSNT_04493___    635 GCATGAGACGGATTTTGCAGCAGCACCCTGATGCTGTACTGGTCATAGCA    684
                      |||..||.|.|.||     .|||      |||.||.|.||.|.||.||.
RBAM_037550      857 -CATCTGATGTACTT-----GAGC------ATGTTGAAGTGCTGATCGCG    894

BSNT_04493___    685 GGCG--GGAAGTGGTTCAGCGATG-----------------ACAG---CG    712
                     ||||  ||         ||.||||                 ||||   ||
RBAM_037550      895 GGCGACGG---------AGAGATGAGGAGCGCCTTAGAGGAACAGGCTCG    935

BSNT_04493___    713 AAAAC-CAATATGTCACCTATCTGCGCACGCTGGCGCTGCC--------A    753
                     ||||| .|||       ||||||..|         |.|.||        |
RBAM_037550      936 AAAACTGAAT-------CTATCTATG---------GTTTCCTTTTTAGGA    969

BSNT_04493___    754 TACAGAGACCACATAATCTTTACAAAATTCATTCCCGCAGACGACATCCC    803
                     .|.||||     ||.||             .||||||             
RBAM_037550      970 AAAAGAG-----ATGAT-------------GTTCCCG-------------    988

BSNT_04493___    804 AAACCTATTTCTG---ATGGCAGATGTATTTGT-GTGCAG-CTCTCAGTG    848
                         |||||| ||   |||.|.||..||||.|| .|||.| |   ||.| 
RBAM_037550      989 ----CTATTT-TGAATATGACGGACATATTCGTACTGCCGAC---CATT-   1029

BSNT_04493___    849 GAACGAACCCCTCGCCCGTGTGAATTA-TGAAGCAATG----GCGGC-CG    892
                      ||.||....|| |||..|.|..|||| ||||||.|||    ||||| ||
RBAM_037550     1030 -AATGATAGTCT-GCCTATTTCGATTATTGAAGCGATGTTCAGCGGCTCG   1077

BSNT_04493___    893 G-------CACGCCC--TT-------AATTACC-----------------    909
                     |       |.||.||  ||       .||| ||                 
RBAM_037550     1078 GCTATCATCGCGACCGATTGCGGGGGTATT-CCGGATCTGATCCGCCATA   1126

BSNT_04493___    910 ACAAACCGGGGCGGAAACGGTGAAGTCGTAAAACACGAAGTCACTGGCC-    958
                     |||||.||||||  ..|..||..||.||..|||..|.|||...||.||| 
RBAM_037550     1127 ACAAAACGGGGC--TTATTGTCGAGCCGGGAAATGCAAAGGTTCTTGCCC   1174

BSNT_04493___    959 ------------TTGTCATCGACAGATAC-AACAAACCTTCTTC------    989
                                 ||.|.|||       || ||||||   |||.|      
RBAM_037550     1175 GGGCTTTAGCGTTTTTTATC-------ACTAACAAA---TCTGCGCGGAA   1214

BSNT_04493___    990 -AT------TTGCAAAAGCAATTGACAGAGCCTTTAC----AGATCAAGA   1028
                      ||      || ||||.||||     || |||  |||    |||  ||.|
RBAM_037550     1215 GATAGCTGCTT-CAAACGCAA-----AG-GCC--TACGCGGAGA--AATA   1253

BSNT_04493___   1029 ATTAA----TGA-ACAAAATGACAAAAAACGCCCGAAAGCATGTAGAA--   1071
                     .||||    ||| ||  .||||.|||||            ||.|.|||  
RBAM_037550     1254 TTTAAGCAGTGAGAC--GATGATAAAAA------------ATATCGAATC   1289

BSNT_04493___   1072 GCTTTATTTACCTTTACCCATGCTGCCAAAAGGCTCAATACTGTTTACCA   1121
                     |.|||||                   |||||              |||||
RBAM_037550     1290 GATTTAT-------------------CAAAA--------------TACCA   1306

BSNT_04493___   1122 ATCCGTTCTGACCCCGAAAAACAAACAATTTCCGCCGCCTTTTCTGACGC   1171
                     | |.|.||.||....||..|..|||||                 |||   
RBAM_037550     1307 A-CAGCTCGGAGGGAGATCATGAAACA-----------------TGA---   1335

BSNT_04493___   1172 GAAATTTTGATTTATCATCTATCAATAGCTTTTTGTGA   1209
                                                           
RBAM_037550     1335 --------------------------------------   1335


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.