Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04493 and RBAM_037550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:00
# Commandline: needle
# -asequence dna-align/BSNT_04493___ytcC.1.9828.seq
# -bsequence dna-align/RBAM_037550.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04493___ytcC-RBAM_037550.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04493___ytcC-RBAM_037550.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04493___ytcC
# 2: RBAM_037550
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1688
# Identity: 680/1688 (40.3%)
# Similarity: 680/1688 (40.3%)
# Gaps: 832/1688 (49.3%)
# Score: 1122.5
#
#
#=======================================
BSNT_04493___ 1 ATGAAGC-------TTGCCTT----TATCTGTA-------CAGA------ 26
||||| | ||.||.| ||||.||| ||||
RBAM_037550 1 ATGAA-CAAGACATTTTCCGTCCCCTATCCGTATATGATCCAGACGCTTG 49
BSNT_04493___ 27 AAAGCTGC--CG----------GCGCCCGC------------------AG 46
|.||||.| || |||||||| ||
RBAM_037550 50 ACAGCTACTACGGGGTCAAAACGCGCCCGCAAAAACAGAAAGCCATAAAG 99
BSNT_04493___ 47 TACGCGG----------------------CGGCGCTATTC-------AAA 67
||.|.| ||.||.|||.| |||
RBAM_037550 100 -ACACAGATGAAACATGCAGATCAAATTCCGCCGGTATACAGGAAAAAAA 148
BSNT_04493___ 68 TGA------------TGATTGACGGTGTCACGCCCTATTTCAGCAGCAGG 105
.|| |||| ||.|||| ||| .||
RBAM_037550 149 AGAAGTTATCCATTTTGAT------TGCCACG-----TTT-------TGG 180
BSNT_04493___ 106 TACGACCTGACCA------TTTTTTCAA-------TAGAAGATCCATCGC 142
.||.|||.|..|| .|||.|||| ||.|| |||
RBAM_037550 181 GACTACCCGCACACGGGCGGTTTATCAAACTATATTAAAA-------CGC 223
BSNT_04493___ 143 T----------CCCAAAAAGAGA-AACAAAAGACGG-----------CGT 170
| |..||||||||| ..||.|||..|| |.|
RBAM_037550 224 TTAGTGAAGGCCTGAAAAAGAGAGGTCATAAGGTGGATGTCATATCCCCT 273
BSNT_04493___ 171 ACAT-TATATCCGTCTGC-----CAAAAGAACATTACCGCG--AGGCGGT 212
| || |.|.||||||.|| .|||||| ||.||| .|||.||
RBAM_037550 274 A-ATCTGTTTCCGTCCGCACAGGTAAAAGA-----ACTGCGGACGGCTGT 317
BSNT_04493___ 213 AG--CCG-------AAGAGCTGCGAGCCTCTTCCTTT-------GATCT- 245
.| ||| |||| ||.|||| |||.|
RBAM_037550 318 TGTTCCGAAATTAAAAGA------------TTTCTTTAAAGACAGATATG 355
BSNT_04493___ 246 ----------CATTCATGTGTTCAACAGGCCTTTAAAT----GTC---TC 278
|..||||.|.||.|| |||| |.| |.
RBAM_037550 356 GGGATTATAACGATCATATTTTGAA---------AAATAATCGGCTGATG 396
BSNT_04493___ 279 TTTATATA----AAAAAGCCTCACCAAACA--------GCAAGAT----- 311
|||||||| .|||.||.||| |||.| |.|||||
RBAM_037550 397 TTTATATACGAGCAAATGCTTCA--AAAGATTCATTTGGAAAGATATGAT 444
BSNT_04493___ 312 -CGTTCTGAGCCTGCATAA--------------CGAAATGTT-------T 339
.|||| |..||..|| |.|.||||| |
RBAM_037550 445 GTGTTC----CACGCTCAAGATTTATTTACAGCCAATATGTTAGGCAGGT 490
BSNT_04493___ 340 TCA--GAAA-----AAAAAATGACCTT-----------CGCGCAAGG--- 368
||| .||| ||||| ||||| | ||||.||
RBAM_037550 491 TCAATCAAATCTATAAAAA---ACCTTTATTTTTCACAC-CGCATGGCAT 536
BSNT_04493___ 369 ----------AAAAGAAGTACTCGACAATGTCTCCATGATCACAA----- 403
||.|||..|| |||.|| .|||..|.|.||
RBAM_037550 537 GTTTACTTTCAACAGACTTA------AATTTC-ACATCTTTAAAAAAGGC 579
BSNT_04493___ 404 -CTGT----GAGCGAATTTATT---AAAC----------AAACCGTCATT 435
|.|| ||| ||||||| |||| ||| |.||||
RBAM_037550 580 TCGGTAGAAGAG---ATTTATTATAAAACATTAGAGATGAAA--GCCATT 624
BSNT_04493___ 436 GA-------------------------------ACGTTTC---------- 444
|| |||||.|
RBAM_037550 625 GAATACGCAGATCGCCTGATTATTATCAGCGATACGTTCCGCAGCCCCCT 674
BSNT_04493___ 445 CCTGAAGC-------------CGAGGACATCACAAAAGTTGTGTATTCCG 481
|.|||||| .||.|||||.||||
RBAM_037550 675 CATGAAGCTCGGAGCCGAACAGGAAGACATGACAA--------------- 709
BSNT_04493___ 482 GCGTTGAT----TTAAACTCTTATCCGCCCGTCTGGACGATG-AAAGGCT 526
||.|||| ..||.|..|| |||||| |||..|
RBAM_037550 710 -CGGTGATCACAGGAATCGATT--------------ACGATGCAAAAAC- 743
BSNT_04493___ 527 CGGCTG--TCAGAAAAAC----ATACCGGAAAAAATACG----------- 559
.|||.| ..|||||||| .||||| |||||||.|
RBAM_037550 744 AGGCGGGAAAAGAAAAACCCCGTTACCG--AAAAATAAGATCATCATCTC 791
BSNT_04493___ 560 --GTATTG-AAGATAAAAAAGTTATTTTATTCGCCGGCCGCTTAAGCCCG 606
|||||| |||| |||.|||||
RBAM_037550 792 GTGTATTGCAAGA----------------------------TTAGGCCCG 813
BSNT_04493___ 607 ACAAAAGGACCTCA------------------CCTTCTC----ATTCACA 634
|.|||||| ||| |||| || ||||
RBAM_037550 814 AGAAAAGG---TCACAAATATTTACTGGACGCCCTT-TCGAGAATTC--- 856
BSNT_04493___ 635 GCATGAGACGGATTTTGCAGCAGCACCCTGATGCTGTACTGGTCATAGCA 684
|||..||.|.|.|| .||| |||.||.|.||.|.||.||.
RBAM_037550 857 -CATCTGATGTACTT-----GAGC------ATGTTGAAGTGCTGATCGCG 894
BSNT_04493___ 685 GGCG--GGAAGTGGTTCAGCGATG-----------------ACAG---CG 712
|||| || ||.|||| |||| ||
RBAM_037550 895 GGCGACGG---------AGAGATGAGGAGCGCCTTAGAGGAACAGGCTCG 935
BSNT_04493___ 713 AAAAC-CAATATGTCACCTATCTGCGCACGCTGGCGCTGCC--------A 753
||||| .||| ||||||..| |.|.|| |
RBAM_037550 936 AAAACTGAAT-------CTATCTATG---------GTTTCCTTTTTAGGA 969
BSNT_04493___ 754 TACAGAGACCACATAATCTTTACAAAATTCATTCCCGCAGACGACATCCC 803
.|.|||| ||.|| .||||||
RBAM_037550 970 AAAAGAG-----ATGAT-------------GTTCCCG------------- 988
BSNT_04493___ 804 AAACCTATTTCTG---ATGGCAGATGTATTTGT-GTGCAG-CTCTCAGTG 848
|||||| || |||.|.||..||||.|| .|||.| | ||.|
RBAM_037550 989 ----CTATTT-TGAATATGACGGACATATTCGTACTGCCGAC---CATT- 1029
BSNT_04493___ 849 GAACGAACCCCTCGCCCGTGTGAATTA-TGAAGCAATG----GCGGC-CG 892
||.||....|| |||..|.|..|||| ||||||.||| ||||| ||
RBAM_037550 1030 -AATGATAGTCT-GCCTATTTCGATTATTGAAGCGATGTTCAGCGGCTCG 1077
BSNT_04493___ 893 G-------CACGCCC--TT-------AATTACC----------------- 909
| |.||.|| || .||| ||
RBAM_037550 1078 GCTATCATCGCGACCGATTGCGGGGGTATT-CCGGATCTGATCCGCCATA 1126
BSNT_04493___ 910 ACAAACCGGGGCGGAAACGGTGAAGTCGTAAAACACGAAGTCACTGGCC- 958
|||||.|||||| ..|..||..||.||..|||..|.|||...||.|||
RBAM_037550 1127 ACAAAACGGGGC--TTATTGTCGAGCCGGGAAATGCAAAGGTTCTTGCCC 1174
BSNT_04493___ 959 ------------TTGTCATCGACAGATAC-AACAAACCTTCTTC------ 989
||.|.||| || |||||| |||.|
RBAM_037550 1175 GGGCTTTAGCGTTTTTTATC-------ACTAACAAA---TCTGCGCGGAA 1214
BSNT_04493___ 990 -AT------TTGCAAAAGCAATTGACAGAGCCTTTAC----AGATCAAGA 1028
|| || ||||.|||| || ||| ||| ||| ||.|
RBAM_037550 1215 GATAGCTGCTT-CAAACGCAA-----AG-GCC--TACGCGGAGA--AATA 1253
BSNT_04493___ 1029 ATTAA----TGA-ACAAAATGACAAAAAACGCCCGAAAGCATGTAGAA-- 1071
.|||| ||| || .||||.||||| ||.|.|||
RBAM_037550 1254 TTTAAGCAGTGAGAC--GATGATAAAAA------------ATATCGAATC 1289
BSNT_04493___ 1072 GCTTTATTTACCTTTACCCATGCTGCCAAAAGGCTCAATACTGTTTACCA 1121
|.||||| ||||| |||||
RBAM_037550 1290 GATTTAT-------------------CAAAA--------------TACCA 1306
BSNT_04493___ 1122 ATCCGTTCTGACCCCGAAAAACAAACAATTTCCGCCGCCTTTTCTGACGC 1171
| |.|.||.||....||..|..||||| |||
RBAM_037550 1307 A-CAGCTCGGAGGGAGATCATGAAACA-----------------TGA--- 1335
BSNT_04493___ 1172 GAAATTTTGATTTATCATCTATCAATAGCTTTTTGTGA 1209
RBAM_037550 1335 -------------------------------------- 1335
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