Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06218 and RBAM_037500

See Amino acid alignment / Visit BSNT_06218 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:40
# Commandline: needle
#    -asequence dna-align/BSNT_06218___yycC.1.9828.seq
#    -bsequence dna-align/RBAM_037500___yycC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06218___yycC-RBAM_037500___yycC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06218___yycC-RBAM_037500___yycC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06218___yycC
# 2: RBAM_037500___yycC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 148
# Identity:     115/148 (77.7%)
# Similarity:   115/148 (77.7%)
# Gaps:          11/148 ( 7.4%)
# Score: 454.5
# 
#
#=======================================

BSNT_06218___      1 GTGAGACCTTTGCAAATTTCTGCTGAAACTGCACAAAAGCTTGCAGAGTC     50
                     .|||.|||..||||||||||.||.|||||.||.||||||||.|||||.||
RBAM_037500__      1 ATGAAACCGCTGCAAATTTCCGCCGAAACGGCGCAAAAGCTCGCAGAATC     50

BSNT_06218___     51 CTTGAATCTGCCGCTTGAACAG-ATCATGCATATGCCTCAGCATATTCTG     99
                     ..|||||.||||||||| |.|| ||||||||.|||||||||||.||||||
RBAM_037500__     51 ACTGAATATGCCGCTTG-AGAGAATCATGCACATGCCTCAGCACATTCTG     99

BSNT_06218___    100 CTTGCCAAAATGGCTGAACTGCAAAAAGAG------GACAAATCATAG    141
                     |||||||||.|.||||||.|.|||||||||      .||||||.|   
RBAM_037500__    100 CTTGCCAAATTAGCTGAAGTCCAAAAAGAGAACGATCACAAATAA---    144


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