Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06198 and RBAM_037380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:39
# Commandline: needle
# -asequence dna-align/BSNT_06198___yycH.1.9828.seq
# -bsequence dna-align/RBAM_037380___yycH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06198___yycH-RBAM_037380___yycH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06198___yycH-RBAM_037380___yycH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06198___yycH
# 2: RBAM_037380___yycH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1422
# Identity: 1023/1422 (71.9%)
# Similarity: 1023/1422 (71.9%)
# Gaps: 117/1422 ( 8.2%)
# Score: 3624.5
#
#
#=======================================
BSNT_06198___ 1 ATGAAGCGTGAAAATATAAAAACGATATTACTTACGGTACTCGTCGTCAT 50
||||.||||||||||||||||||..|..||||..|.||.||.||||||||
RBAM_037380__ 1 ATGAGGCGTGAAAATATAAAAACAGTCATACTGTCAGTGCTGGTCGTCAT 50
BSNT_06198___ 51 CAGTCTTGTTTTTACATGGGGGATATGGACGTTCCAGCCAAACTTTTCTG 100
.|||||||||||.||||||||.||.|||||.||||||||.||.|||||.|
RBAM_037380__ 51 TAGTCTTGTTTTAACATGGGGAATTTGGACATTCCAGCCCAATTTTTCAG 100
BSNT_06198___ 101 AAGGCTCATCCTCAACAGAGTCTACTGTTCGTGAGAAACACAAAATCGAA 150
|||||.|..||||.||..|.||.|||||.||.||.||.||.|||||.||.
RBAM_037380__ 101 AAGGCACGGCCTCTACCAAATCGACTGTCCGGGAAAAGCATAAAATTGAT 150
BSNT_06198___ 151 AAAACCACCCAAAAGCTGTCTGAAACGGTAAGGCCGAGGGACATGTTTAT 200
|||||.|.||||||..||||..|||||||||..||..||||.||||||||
RBAM_037380__ 151 AAAACGAGCCAAAAAGTGTCGCAAACGGTAAAACCCCGGGATATGTTTAT 200
BSNT_06198___ 201 TCATGATGACGGCGCTCATTACAAAGTGGATGACAATGCCCTCTATGAAG 250
||||....|||||.|||||||.|||||||||||..|..|.||||.|.|.|
RBAM_037380__ 201 TCATACAAACGGCTCTCATTATAAAGTGGATGATGAGACGCTCTTTAATG 250
BSNT_06198___ 251 AAATTTGGTCTGACTTGCCGCATTGGGATGTAAAAGGAATTAAAGATATT 300
|..|.|||.|.||.||||||||.|||||.||||||||.||.||.||||||
RBAM_037380__ 251 ACCTGTGGGCGGATTTGCCGCAATGGGAAGTAAAAGGGATGAAGGATATT 300
BSNT_06198___ 301 TCGGATCAGTATGACAAGGCT-GGATTCAAGAGCTGGTTTTATG---GAA 346
||.|||||.||.||||| ||| ||.||.||.|..|||.||||.| |||
RBAM_037380__ 301 TCCGATCAATACGACAA-GCTCGGTTTTAAAAATTGGCTTTACGGCAGAA 349
BSNT_06198___ 347 TAGGCGGTTCTGAAGCCAAGCTTGACTTGCAATTCAGCGATACGATTCCG 396
..|||..||| .||.|||||.||..|||||||||..||.||.||||||
RBAM_037380__ 350 ACGGCAATTC---GGCAAAGCTCGATCTGCAATTCAATGACACCATTCCG 396
BSNT_06198___ 397 ATTGATATTTTCCAAACACTGTTTAAATGGTCTAATCAGTCGTTTGAATA 446
||||||.|.||||||.|..|||||||||||||.||||.|||..|.|||||
RBAM_037380__ 397 ATTGATTTCTTCCAATCGATGTTTAAATGGTCGAATCCGTCAATGGAATA 446
BSNT_06198___ 447 CAGTTCGTTTGACCATATTCTGATCCCGTTCAATGAAACAAAAG-CGAAC 495
|||.||.||||||||||||.|.||.|||||.|||||.| |.||| |.||.
RBAM_037380__ 447 CAGCTCATTTGACCATATTGTCATTCCGTTTAATGAGA-ATAAGACAAAT 495
BSNT_06198___ 496 AAGAAAATCTATTTGGTGTCTTACAGCAAGCAGCTCATTCTCGAAGTGAC 545
|||||.||.||..||||.||.||||||||||||||.|||.|.||||||||
RBAM_037380__ 496 AAGAAGATTTACATGGTCTCATACAGCAAGCAGCTGATTTTGGAAGTGAC 545
BSNT_06198___ 546 GGTTGAATCGGCGAACTACCGGAACATTATGAATGACTTGAAAAACAGGC 595
.||.|||||||||||.|||||.||..|.||||||||..||.|.| ||
RBAM_037380__ 546 TGTGGAATCGGCGAATTACCGCAATCTGATGAATGAGCTGTACA----GC 591
BSNT_06198___ 596 AA----TCAAATATGCCGGCGTTCAGTTTGT----TCTCCATTGGCTC-- 635
|| ||.|.||||||| ||.| .|||.|||.|.||
RBAM_037380__ 592 AAAAAGTCGAGTATGCCG---------TTATACCACCTCTATTCGGTCGG 632
BSNT_06198___ 636 --AAAG-AAAGAGTTCTTGCTGCCGAACAAACCGCTTACGATGGACAAAA 682
|||| |||||.||..|..|||||||....|.|.|||..|||.|..|||
RBAM_037380__ 633 AAAAAGCAAAGAATTTCTCATGCCGAATGCGCGGTTTAATATGAAGGAAA 682
BSNT_06198___ 683 AAGAATTTGTCACTGAATCGATTAAAACAAATACC--TTTAAGCAG--GC 728
||||||||.||||||||.|.|||||.||.| ||| ||||||||| ||
RBAM_037380__ 683 AAGAATTTATCACTGAAACCATTAAGACGA--ACCTGTTTAAGCAGACGC 730
BSNT_06198___ 729 TTTGTTTAGTGATCCGAGCATTGTAAGAGAAGATTCGAATTACAA-CAAC 777
|| ||||.|||||||||||..||.||||||||..|||||||||| |
RBAM_037380__ 731 TT--TTTAATGATCCGAGCACGGTCAGAGAAGACCCGAATTACAATC--- 775
BSNT_06198___ 778 AGAAATGTGCTGACAGATGGGATCAGCCGTTTAGATGTGAATCTA----A 823
|.|||||||||||.||.||.|||||||||.|.|| ||||.| |
RBAM_037380__ 776 -GGAATGTGCTGACTGACGGAATCAGCCGTCTGGA----AATCAATTCGA 820
BSNT_06198___ 824 GCCAGCGACAGGTGCAATTCCAACAGCGCAATTTGGTGCAGAGCACATCC 873
..|||||.|||.|.||||||||.||.||.||..|||..||.|||.|.||.
RBAM_037380__ 821 CACAGCGGCAGATTCAATTCCAGCATCGGAACCTGGCACAAAGCGCTTCT 870
BSNT_06198___ 874 TATCAAACAGGTGAATTAATCAAAAAGAGCCAAAAATACCTTGAGGATAC 923
|||||||||||.||..|.||.||.||.|||.|.|||||..|.||||||||
RBAM_037380__ 871 TATCAAACAGGGGAGCTGATTAAGAAAAGCTATAAATATTTAGAGGATAC 920
BSNT_06198___ 924 CGGAAGCTGGACGGATCACTATCAATTTTTCAATATTAATGACAGCCAGC 973
.|||||||||||||||||.|||||||||||||||.|.|.|||.|.|||||
RBAM_037380__ 921 GGGAAGCTGGACGGATCATTATCAATTTTTCAATGTGAGTGATAACCAGC 970
BSNT_06198___ 974 AGCTGAGCTTCTATATCTTTATGGATCAGATCCCGGTCATTAACAGCACC 1023
|||||||.|||||.||.||||..||.||.||.||.||.|||||||||||.
RBAM_037380__ 971 AGCTGAGTTTCTACATGTTTAAAGACCAAATGCCTGTGATTAACAGCACG 1020
BSNT_06198___ 1024 GCCAAACCTTTCGGGGCGACATCGGCGA-------TTACGGTGCAATGGG 1066
.|.||.|||||||| |||.| || |.||..|||||||||
RBAM_037380__ 1021 TCTAAGCCTTTCGG------ATCCG-GACCTGTTTTGACCCTGCAATGGG 1063
BSNT_06198___ 1067 CGAATGATGATATTCTCAGCTATAAGCGGCCGAATTACAGTCTCGGAACG 1116
|.|||||.||..||||||||||.|||||||||||.||...|||||||.||
RBAM_037380__ 1064 CCAATGACGAGGTTCTCAGCTACAAGCGGCCGAACTATGTTCTCGGACCG 1113
BSNT_06198___ 1117 AATCCGATTAAAACAA-----GTGAAACAGAGCTCATGAGCGGCAGCGAA 1161
|||||||||||||||| ||.||| .|.||||.|||| |
RBAM_037380__ 1114 AATCCGATTAAAACAAAAGACGTAAAA-----ATGATGAACGGC-----A 1153
BSNT_06198___ 1162 GTGAGGATG-----CTGCTTTCGAAACA----AACCGCTTATGATACGGA 1202
.|||||.|| ||||||..|.|.|| || |||| ||
RBAM_037380__ 1154 ATGAGGTTGTGTCTCTGCTTGAGCAGCAGGATAA---------ATAC-GA 1193
BSNT_06198___ 1203 C------AAAATTGATCAGATCTTCCTTGCTTATCAATTGGTATCAACAT 1246
| |||||.||.|||||||||||..|.||||||.||||.||..|||
RBAM_037380__ 1194 CGTGAATAAAATCGACCAGATCTTCCTGTCCTATCAAATGGTCTCTTCAT 1243
BSNT_06198___ 1247 CAACCAACGATGATCCTCTCGTTGAATTGGAACCGGTTTGGGCGATGAAA 1296
||||.||.|| ||||||||||.|||||||.||.|||...||||||
RBAM_037380__ 1244 CAACGAATGA------TCTCGTTGAACTGGAACCCGTCTGGAGTATGAAA 1287
BSNT_06198___ 1297 GTAAATGGAAAAATTGTGCCGATTACAAAGGATTTATTGAGGAAGGAGGG 1346
.|.||.||.||.||.||.||||||||.||.|||.|..||.|||||||||.
RBAM_037380__ 1288 ATCAACGGGAAGATCGTCCCGATTACGAAAGATCTGCTGGGGAAGGAGGA 1337
BSNT_06198___ 1347 GGCTAACAGTGGAGTGGAATAA 1368
||...|.|.|||||||||||||
RBAM_037380__ 1338 GGACGATAATGGAGTGGAATAA 1359
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