Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06197 and RBAM_037370

See Amino acid alignment / Visit BSNT_06197 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:39
# Commandline: needle
#    -asequence dna-align/BSNT_06197___yycI.1.9828.seq
#    -bsequence dna-align/RBAM_037370___yycI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06197___yycI-RBAM_037370___yycI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06197___yycI-RBAM_037370___yycI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06197___yycI
# 2: RBAM_037370___yycI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     620/882 (70.3%)
# Similarity:   620/882 (70.3%)
# Gaps:          81/882 ( 9.2%)
# Score: 2033.5
# 
#
#=======================================

BSNT_06197___      1 GTGGAGTGGAATAAGACAAAATCAATCTTCATCGTTGCCTTCCTCATTTT     50
                     .||||||||||||||||||||.|.|||||||||.|||||||||||||..|
RBAM_037370__      1 ATGGAGTGGAATAAGACAAAAACGATCTTCATCATTGCCTTCCTCATCCT     50

BSNT_06197___     51 AGATATTTTCTTAGGCTATCAGTTTTTTCAAAAATGGCAGGCTACCG-GC     99
                     .||||||||..|.|||||||||||||||.||||     |.|||  || ||
RBAM_037370__     51 CGATATTTTTCTCGGCTATCAGTTTTTTGAAAA-----ACGCT--CGAGC     93

BSNT_06197___    100 AAAGAATATGAAGTCATTAAAAAT---GATGTCGAGCATGACATGAAGGC    146
                     |..|||||.|||||.|||||||||   .||||.||..|.||||||.||..
RBAM_037370__     94 AGTGAATACGAAGTGATTAAAAATTCAAATGTGGAAAAAGACATGGAGAT    143

BSNT_06197___    147 CGATCATATCACGTATG--AA---GGCT--TGAATAAGGAAGCGACAGAA    189
                     .|||||||||||.|..|  ||   |.||  |||.|    ..|||||   .
RBAM_037370__    144 GGATCATATCACTTTCGGCAACCTGTCTTCTGATT----CCGCGAC---G    186

BSNT_06197___    190 GGCTATCGGATCACGGCAAATCAAAA-GTCTTT--CTCCAAGGAGGAAAT    236
                     |||||.|||.|.|||||....||||| ||.|||  |.||   ||.||.||
RBAM_037370__    187 GGCTACCGGCTGACGGCGGGCCAAAAGGTATTTACCGCC---GAAGATAT    233

BSNT_06197___    237 TGAGGCGCTGAAGGATCAAAAGCCTTTGATGGACATGCCTAGTGATGATC    286
                     |||.||..||||.||||||||||||||.|||||.|||||....|||||||
RBAM_037370__    234 TGATGCTTTGAAAGATCAAAAGCCTTTAATGGAGATGCCGGCGGATGATC    283

BSNT_06197___    287 ATAAAGTAACGAGCCTGAAAATGAAGTTTGCAAATCCAATCGCCCTATCA    336
                     |.||.||.||.|..|||||||||||.|||.|..||||..|||...||||.
RBAM_037370__    284 ACAAGGTTACCACACTGAAAATGAAATTTACCGATCCGGTCGGTTTATCG    333

BSNT_06197___    337 AAG-AAGGATATCG-AGGACGATGCTCAGGCACTTGTTTCTTCGAAAATT    384
                     ||| ||  |.|.|| |.||.|||||..|..|.||.||....||.||||| 
RBAM_037370__    334 AAGCAA--AAACCGCAAGAGGATGCGGAATCGCTCGTCAGCTCTAAAAT-    380

BSNT_06197___    385 CAA--GATGGCGAAAAATATAAGCTTTGGAAGGTTGATAA--ATCGAAGA    430
                      ||  |..||.|||||||||||.||.|||||.||.||.||  ||  ||.|
RBAM_037370__    381 -AACCGGCGGTGAAAAATATAAACTGTGGAAAGTCGACAAGGAT--AAAA    427

BSNT_06197___    431 AAGAAATTATTTTCTTCCAAACGTACGAAGGTCATTATATTTACCAAAA-    479
                     ||.|.||.|||||.|.|||.|.|||.||.||.||.|..|||||.||..| 
RBAM_037370__    428 AACAGATCATTTTTTACCAGATGTATGACGGCCAGTTGATTTATCAGGAT    477

BSNT_06197___    480 ---GACCGACAATC--CCTCTAATATGATCGGGCAAGTGGTGCTGCACTT    524
                        |||      ||  ||.|..||..||||||.||.|||.|.|||||..|
RBAM_037370__    478 TTTGAC------TCGTCCACGGATGCGATCGGACAGGTGATTCTGCATCT    521

BSNT_06197___    525 AAACGGTAAAAACGAGGTTGTGTCATACGACCAGACTACGCTTGAGACCT    574
                     .||||.||||||||||||.||.||.|||||.|||||.|.|||.|||.|.|
RBAM_037370__    522 GAACGATAAAAACGAGGTCGTATCTTACGAGCAGACCATGCTGGAGTCAT    571

BSNT_06197___    575 TCAAGCAAATTCAGAAAGAAAGCTTAATTACTGAAATGGATGCGGTTGAG    624
                     ||||||.|||.||||..||.|||.|.|||.||||..|.||||||||.||.
RBAM_037370__    572 TCAAGCGAATCCAGACGGAGAGCCTGATTCCTGAGCTTGATGCGGTCGAA    621

BSNT_06197___    625 CTGTTGTACTATCAAAATCAATTAAAA--GAATACAGCACTGTGAAGAGC    672
                     .|.|||||.|.|||||||.|.||||||  ||||  .||.|.||.||.|||
RBAM_037370__    622 TTATTGTATTCTCAAAATTACTTAAAAGCGAAT--TGCGCCGTTAAAAGC    669

BSNT_06197___    673 TGTAAATTCGGCTATGTAGCACAATATCCGCTGACAAGTACGCAGGTGCT    722
                     ..|||.|||||||||.|.||.|||||||||||||||||||||||||||||
RBAM_037370__    670 GTTAAGTTCGGCTATATTGCCCAATATCCGCTGACAAGTACGCAGGTGCT    719

BSNT_06197___    723 GGCGCCGGTATGGAGAATTACAGTCGAGTACGATAA---AAAAGTGAACG    769
                     ||||||||||||||||||||||.|.|   |.|||||   |||||.||   
RBAM_037370__    720 GGCGCCGGTATGGAGAATTACAATTG---AAGATAAGTCAAAAGGGA---    763

BSNT_06197___    770 GCG-AGAAAAAGACAGTACAAGAGTATTTTACTGTGAATGCTTTGGAGAG    818
                      || |||||||||||...|||..|||   .|||||||||||.|||||.||
RBAM_037370__    764 -CGAAGAAAAAGACACAGCAAACGTA---CACTGTGAATGCATTGGAAAG    809

BSNT_06197___    819 TACGATTTTAGAT-ACAGATC--AATGA----    843
                     .||..|..|.||| ||| |||  |||.|    
RBAM_037370__    810 CACAGTCATTGATAACA-ATCAAAATAAATAA    840


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06197 and RBAM_037370

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
