Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06195 and RBAM_037350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:39
# Commandline: needle
# -asequence dna-align/BSNT_06195___yyxA.1.9828.seq
# -bsequence dna-align/RBAM_037350___yyxA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06195___yyxA-RBAM_037350___yyxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06195___yyxA-RBAM_037350___yyxA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06195___yyxA
# 2: RBAM_037350___yyxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1244
# Identity: 878/1244 (70.6%)
# Similarity: 878/1244 (70.6%)
# Gaps: 88/1244 ( 7.1%)
# Score: 3007.5
#
#
#=======================================
BSNT_06195___ 1 ATGGTGGATTACGAACGTGAGGAAGAACA-TACTACTCCTGAACAGCCAA 49
||||||||..|.||.||.||.||||| |||..|||| ||||||||..
RBAM_037350__ 1 ---GTGGATTATAATCGCGATGATGAACAGTACGCCTCC-GAACAGCCCC 46
BSNT_06195___ 50 AGAGAAGCAAAAAAGGATATTTTCTTTCGAGTCTGATTGGCGTGATTGTC 99
...|.|||||.|.|||.||.|||||.||.||||||||.|||||.||.|||
RBAM_037350__ 47 GCCGCAGCAAGAGAGGGTACTTTCTATCAAGTCTGATCGGCGTCATCGTC 96
BSNT_06195___ 100 GGTGCCGTATTAATGGCGTTTATCATGCCGTACCTTTCAAATGAAGGGCT 149
||.||||...|.|||||.||..|..||||||| ||
RBAM_037350__ 97 GGGGCCGCGCTCATGGCTTTCCTGCTGCCGTA----------------CT 130
BSNT_06195___ 150 GGATACAGGCGCCTTAGATCA-GCAGCAAAACAACAATGGC--------- 189
|| ||||||| .|||||| |.|| ||||||.|||..||
RBAM_037350__ 131 GG--ACAGGCG---GAGATCATGGAG-AAAACAGCAAAAGCACCAGCCAG 174
BSNT_06195___ 190 CG----GGAATCAATCAGG-----ACGGTGAATGTCAGTGTCAACAATGC 230
|| ||.|.|.|.|||| ||.||.||.||.|.||||||..|.||
RBAM_037350__ 175 CGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGC 224
BSNT_06195___ 231 CGTCACCAAGATTGTCAGCAATGTGTCGCCCGCCGTTGTCGGTGTTGTGA 280
.|||||.||.||.||||||..|||.||.....|.||.|||||.|||.|.|
RBAM_037350__ 225 TGTCACGAATATGGTCAGCCGTGTATCAGATTCGGTAGTCGGCGTTCTCA 274
BSNT_06195___ 281 ACATCCAAAAATCAGATATTTGGGGAGAGAGCGGCGAGGCTGGGAGCGGC 330
|.||||||||..|.|||||||||||||||.|||||||.||.||.|||||.
RBAM_037350__ 275 ATATCCAAAAGACCGATATTTGGGGAGAGGGCGGCGAAGCGGGAAGCGGG 324
BSNT_06195___ 331 TCTGGCGTCATCTATAAGAAAAATGACAACTCCGCTTATGTCGTGACCAA 380
||.||||||||.||.||.||.||.|..|||.|..|||||.||||.|||||
RBAM_037350__ 325 TCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAA 374
BSNT_06195___ 381 CCATCATGTCATCGAAGGCGCTTCCCAAATTGAAATCAGCTTGAAAGACG 430
.||.||||||||.|||||.||..|..|.|||||.||||||.||||.||.|
RBAM_037350__ 375 TCACCATGTCATTGAAGGTGCGACTGAGATTGAGATCAGCCTGAAGGATG 424
BSNT_06195___ 431 GTTCACGTGTATCAGCTGATCTTGTCGGCAGCGACCAG-CTGATGGACCT 479
|.|||||.||..|.|||||.||..||||.||||| ||| ||||||||.||
RBAM_037350__ 425 GCTCACGCGTGCCTGCTGAGCTGATCGGGAGCGA-CAGTCTGATGGATCT 473
BSNT_06195___ 480 TGCCGTTTTACGGGTGAAAAGCGATAAAATTAAAGCAGTCGCCGATTTCG 529
.||.||..|...|||||||...||||||||.|||.|.|.||||.|.||||
RBAM_037350__ 474 CGCTGTGCTGAAGGTGAAATCTGATAAAATCAAATCGGCCGCCCAGTTCG 523
BSNT_06195___ 530 GAAATTCAGATAAAGT-GAAGTCTGGCGAGCCGGTTATTGCGATCGGGAA 578
|.|||||.|||.|.|| .||||| ||.||.|||||.|||||||||||.||
RBAM_037350__ 524 GCAATTCCGATCAGGTCAAAGTC-GGAGAACCGGTCATTGCGATCGGAAA 572
BSNT_06195___ 579 CCCGTTAGGCCTTGAGTTTGCAGGCTCTGTCACACAAGGCGTCATCTCAG 628
.|||.|.||.|||||.|||||.||.||.||.|||||.||..||||.||||
RBAM_037350__ 573 TCCGCTTGGGCTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAG 622
BSNT_06195___ 629 GTACGGAGAGGGCGATCCCAGTGGATTCAAACGGTGATGGACAGCCTGAC 678
|.|||||.||||||.|.||.||.||.||||||||.||.||||||||.||.
RBAM_037350__ 623 GCACGGAAAGGGCGGTGCCCGTTGACTCAAACGGCGACGGACAGCCGGAT 672
BSNT_06195___ 679 TGGAATGCAGAAGTCCTGCAAACAGATGCGGCCATTAACCCTGGGAACAG 728
||||||||.|||||.|||||.||.|||||.||.||||||||.||.|||||
RBAM_037350__ 673 TGGAATGCGGAAGTGCTGCAGACCGATGCCGCGATTAACCCCGGCAACAG 722
BSNT_06195___ 729 CGGCGGCGCTTTGTTAAATATGGAT------GGGAAGGTCATTGGCATCA 772
||||||||||||| |||||| ||.|||||..|.|||||||
RBAM_037350__ 723 CGGCGGCGCTTTG------ATGGATATATCGGGCAAGGTGGTCGGCATCA 766
BSNT_06195___ 773 ATTCAATGAAAATTGCCGAGTCGGCGGTTGAAGGGATTGGCCTGTCGATT 822
|.||||||||.||.||.||.||.||.|||||||||||.||||||||.||.
RBAM_037350__ 767 ACTCAATGAAGATCGCTGAATCCGCCGTTGAAGGGATCGGCCTGTCCATC 816
BSNT_06195___ 823 CCATCTAAGCTCGTGATCCCTGTGATAGAGGATTTAGAGAGATACGGAAA 872
||.||.|||||.||.||.||.||.||..||||||||||.|.|||||||.|
RBAM_037350__ 817 CCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGA 866
BSNT_06195___ 873 GGTCAAACGCCCGTTCCTTGGCATTGAGATGAAATCCCTAAGCGACATCG 922
.||||.|||.||.|||||.||.|||||||||||||||.|||..||.||.|
RBAM_037350__ 867 AGTCAGACGGCCTTTCCTCGGTATTGAGATGAAATCCTTAACGGATATTG 916
BSNT_06195___ 923 CAAGCTATCATTGG--------GATGAAACATTAAAGCTTCCTAAGAACG 964
|.|||||.|||||| |.||||| |||||.||...||
RBAM_037350__ 917 CGAGCTACCATTGGAGCCAGACGCTGAAA--------CTTCCGAAAGGCG 958
BSNT_06195___ 965 TCACCAATGGAGTGGTTGTGATGGGTGTAGACGCCTTTTCACCTGCCGGA 1014
|.|..|..||.|.|||..|.||||||||.|||||.||||||||.||||||
RBAM_037350__ 959 TTAAAACCGGGGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGA 1008
BSNT_06195___ 1015 AAAGCAGGGCTGAAGGAACTGGATGTCATCACGGAATTTGACGGATACAA 1064
|||||.||..||||..|.||.||.||.|||||.|..||.||||||.|.||
RBAM_037350__ 1009 AAAGCGGGTTTGAAAAAGCTTGACGTAATCACCGGGTTCGACGGACATAA 1058
BSNT_06195___ 1065 AGTAAATGATATTGTTGACCTGCGAAAACGGCTTTATCAGAAAAAAG-TC 1113
.||.|||||..||||.||.||.||..|.||.||.|||| |.|||||| ||
RBAM_037350__ 1059 GGTCAATGACGTTGTGGATCTCCGTGAGCGCCTGTATC-GCAAAAAGATC 1107
BSNT_06195___ 1114 GGTGACCGGGTGAAGGTGAAGTTTTACCG--CGGCGGAAAAGAAAAATCT 1161
||||||||.|||||..|.|.|||.||||| || |||||..|||||.|.
RBAM_037350__ 1108 GGTGACCGTGTGAACATCACGTTCTACCGTTCG--GGAAAGAAAAAAACA 1155
BSNT_06195___ 1162 GTAGACATCAAGCTGTCCTCCGCAGACCAATTAGGCAG--TTAA 1203
|..||..||||.|||.|....||.||.|.|||| ||| .|||
RBAM_037350__ 1156 GCGGAAGTCAAACTGACAGAAGCGGATCGATTA--CAGAAATAA 1197
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