Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06192 and RBAM_037260

See Amino acid alignment / Visit BSNT_06192 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:39
# Commandline: needle
#    -asequence dna-align/BSNT_06192___rocR.1.9828.seq
#    -bsequence dna-align/RBAM_037260___rocR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06192___rocR-RBAM_037260___rocR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06192___rocR-RBAM_037260___rocR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06192___rocR
# 2: RBAM_037260___rocR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity:    1094/1430 (76.5%)
# Similarity:  1094/1430 (76.5%)
# Gaps:          70/1430 ( 4.9%)
# Score: 4192.5
# 
#
#=======================================

BSNT_06192___      1 ------------------GTGGTCAAAGACAGCGAATTCCTCACATTGGT     32
                                       .||..||.|..|||||||||...||||.|.||
RBAM_037260__      1 TTGAGAGGAGGAATTGACCTGCACACAACCAGCGAATTTTACACACTCGT     50

BSNT_06192___     33 TTTTCAGAGCATTTTAGATGAAATCGATGTTGGCCTGCACGTGGTAGACG     82
                     .||.||.||||||.|.||.||.||.|||||.||..||||.|||||.||||
RBAM_037260__     51 GTTACAAAGCATTCTGGAAGAGATTGATGTCGGGTTGCATGTGGTGGACG    100

BSNT_06192___     83 AGCATGGAAACACAATCGTTTATAACAATAAAATGATGCAGATTGAAGAT    132
                     |..|.||.|.|||..||.||||.||.||.|||||||||||||||||||||
RBAM_037260__    101 AAAAAGGCAGCACCGTCATTTACAATAAGAAAATGATGCAGATTGAAGAT    150

BSNT_06192___    133 ATGGA-GAAGCATGACGTCTTGAATAAAAACCTGATGGATGTGTTTATGT    181
                     ||||| ||| |..||||||.||.||||||||||||..|||||.|||||||
RBAM_037260__    151 ATGGATGAA-CGGGACGTCCTGCATAAAAACCTGACTGATGTATTTATGT    199

BSNT_06192___    182 TTTCAAAGCAGCAGGACAGCACACTGGTACAGGCTCTTCAGGAAGGCAAG    231
                     ||||.||.|||||||||||.||.||.||.|||||.|||||.||||||||.
RBAM_037260__    200 TTTCCAATCAGCAGGACAGTACGCTCGTTCAGGCCCTTCAAGAAGGCAAA    249

BSNT_06192___    232 ACGATTAAAAACGTCAAACAGAGCTATTTCAATAATAAAGGCCAGGAAAT    281
                     |||||||||||.||.||.||.||||||||||||||.||||||||||||||
RBAM_037260__    250 ACGATTAAAAATGTAAAGCAAAGCTATTTCAATAACAAAGGCCAGGAAAT    299

BSNT_06192___    282 TACGACGATCAATCATACATATCCC-ATCGTCCAAGACGGCAAAATCAGG    330
                     .|||||||||||.||.||.| |||| ||.||.|||.|||||.|.||||.|
RBAM_037260__    300 CACGACGATCAACCACACCT-TCCCGATTGTGCAAAACGGCGAGATCAAG    348

BSNT_06192___    331 GGCGCTGTTGAAATTGCCAAGGATGTGACAAAGCTTGAACGGCTGATCAG    380
                     |||||.||.|||||.||||||||.||.||.|||||.||||||||||||||
RBAM_037260__    349 GGCGCCGTGGAAATCGCCAAGGACGTCACCAAGCTCGAACGGCTGATCAG    398

BSNT_06192___    381 GGAGAATATGAACAAAAAAGGCAGCACAAC--CTATACGTTTGACAGTAT    428
                     ||||||.|||.|||..||||  |.||.|||  |||.||||||||||||||
RBAM_037260__    399 GGAGAACATGCACAGGAAAG--AACAGAACAGCTACACGTTTGACAGTAT    446

BSNT_06192___    429 TCTCGGCACCAGTCCGGCCATTCAAGACGTCATCGAAAACGCCAAGCGGG    478
                     ||||||||.|||.||||..||||..||.||||||||||||||.||.||||
RBAM_037260__    447 TCTCGGCAACAGCCCGGTTATTCGGGAAGTCATCGAAAACGCAAAACGGG    496

BSNT_06192___    479 CAACCCGTACGTCATCATCTGTCCTTCTCGCAGGCGAAACCGGCACGGGA    528
                     |||||||.||.||||||||.||.|||.|.||.|||||.||.||.|||||.
RBAM_037260__    497 CAACCCGCACATCATCATCGGTGCTTTTGGCCGGCGAGACGGGAACGGGC    546

BSNT_06192___    529 AAAGAACTGTTCGCGCAAAGTATCCATAATGGAAGCGATCGTTCTGGCGG    578
                     ||.|||||||||||.|||||.||.||.||.||.|||.|.||.||.||||.
RBAM_037260__    547 AAGGAACTGTTCGCCCAAAGCATTCACAACGGCAGCCAGCGCTCAGGCGC    596

BSNT_06192___    579 CCCGTTTATTTCGCAAAACTGTGCGGCACTGCCAGACAGCCTTGTCGAAA    628
                     ||||||.||.||.||||||||.||.||.|||||.||.|||||.|||||||
RBAM_037260__    597 CCCGTTCATCTCACAAAACTGCGCCGCCCTGCCGGATAGCCTGGTCGAAA    646

BSNT_06192___    629 GCATTTTGTTTGGGACGAAAAAAGGCGCGTTTACCGGCGCTGTCGACCAG    678
                     |.|||||.||.||.||||||||||||||.||||||||.||..||||||||
RBAM_037260__    647 GTATTTTATTCGGCACGAAAAAAGGCGCCTTTACCGGAGCCATCGACCAG    696

BSNT_06192___    679 CCCGGCCTGTTTGAACAAGCCCATGGCGGCACACTGCTGTTAGATGAAAT    728
                     ||||||.|.|||||.||.||.||.||.|||||.|||||..|.|||||.||
RBAM_037260__    697 CCCGGCTTATTTGAGCAGGCGCAGGGAGGCACCCTGCTCCTTGATGAGAT    746

BSNT_06192___    729 CAACTCGCTAAATCTCAGCCTTCAGGCGAAGCTGCTGCGCGCCCTTCAAG    778
                     ||||||.||.|||||||||||.|||||.||.|||||.|||||||||||.|
RBAM_037260__    747 CAACTCTCTCAATCTCAGCCTGCAGGCAAAACTGCTCCGCGCCCTTCAGG    796

BSNT_06192___    779 AACGGAAAATCAGGCGCATCGGTTCAACAAAGGATACACCGATTGACGTA    828
                     ||..||||||||||||||||||.|||.|..||||.|.||||||||||||.
RBAM_037260__    797 AAAAGAAAATCAGGCGCATCGGATCAGCTCAGGACAAACCGATTGACGTC    846

BSNT_06192___    829 CGTATTATTGCCACGATGAATGAAGACCCAATTGAT----GCAATTGCAG    874
                     ||.||.||.||||||||||||||||||||    |||    ||.|||.|||
RBAM_037260__    847 CGCATCATCGCCACGATGAATGAAGACCC----GATCACCGCCATTTCAG    892

BSNT_06192___    875 GCGAACGAATGCGGAAGGACTTGTATTATAGGCTGAGTGTCGTCACACTG    924
                     ..||.||..||||.||.||.||.||.||..|..|.||.||.|||||.|||
RBAM_037260__    893 AAGAGCGGCTGCGCAAAGATTTATACTACCGCTTAAGCGTTGTCACGCTG    942

BSNT_06192___    925 ATCATCCCGCCGCTTCGGGAACGAAAAGAAGACATCTTGCTTCTCGCGTC    974
                     |||||.||.|||||.|||||.||.||.||.|||||..|||..||.||  |
RBAM_037260__    943 ATCATTCCCCCGCTCCGGGAGCGCAAGGAGGACATTCTGCCACTGGC--C    990

BSNT_06192___    975 GGAG--TTCATCCAGAAAAACAACCATCTGTTCCAAATGAATGTTGAACA   1022
                     |.||  ||.||||||||||||||.||.||||||||||||.||||.||...
RBAM_037260__    991 GAAGTCTTTATCCAGAAAAACAATCACCTGTTCCAAATGCATGTCGATTC   1040

BSNT_06192___   1023 CATCAGCGATGACGTGAAGCAATTTTTCCTTTCTTATGACTGGCCGGGAA   1072
                     .|||||.||.||.|||.|||.|||.|||.|....||||||||||||||.|
RBAM_037260__   1041 GATCAGTGACGATGTGCAGCGATTCTTCTTGGAATATGACTGGCCGGGCA   1090

BSNT_06192___   1073 ATATTCGCGAGCTTGAGCATATGATCGAAGGCGCAATGAATTTCATGACG   1122
                     |.||.|||||||||||.||||||||.||||||||.|||||.||.||||||
RBAM_037260__   1091 ACATCCGCGAGCTTGAACATATGATTGAAGGCGCCATGAACTTTATGACG   1140

BSNT_06192___   1123 GACGAGCAA--ACGATTACGGCTTCCCATCTGCCCTATCAATACCGCATG   1170
                     ||.||  ||  |||||||||||..||||.|||||.||.||||||||.|||
RBAM_037260__   1141 GATGA--AACGACGATTACGGCGGCCCACCTGCCTTACCAATACCGGATG   1188

BSNT_06192___   1171 AAAATCAAGCCGGCTGACATC-----CCAGAGCCGGAAACACCAAGACA-   1214
                     ||||||||.|||||||||| |     |||.|||||    |..|||| || 
RBAM_037260__   1189 AAAATCAAACCGGCTGACA-CGGAAACCAAAGCCG----CCGCAAG-CAC   1232

BSNT_06192___   1215 CCAGCCAGCCGCGGACTTAAAAGAAAAAATGGAAAGCTTCGAAAAATATG   1264
                     ||||||.|.|.|.||.||||||||.||||||||||.||||||||||||..
RBAM_037260__   1233 CCAGCCCGGCACCGATTTAAAAGACAAAATGGAAAACTTCGAAAAATACA   1282

BSNT_06192___   1265 TGATAGAGAACGTGTTAAGAAAACACGGCCATAACATCTCGAAAGCTGCT   1314
                     ||||.||.||..|..|.||||||||||||.|||||||.||.|||.|.||.
RBAM_037260__   1283 TGATCGAAAAGATCCTGAGAAAACACGGCAATAACATATCCAAAACGGCA   1332

BSNT_06192___   1315 CAGGAGCTTGGCATCAGCAGACAAAGCCTCCAATATCGGCTGAAGAAATT   1364
                     .|.|||||.||.|||||||||||.|||||.|||||.||.|||||.|||| 
RBAM_037260__   1333 AACGAGCTCGGAATCAGCAGACAGAGCCTGCAATACCGCCTGAAAAAAT-   1381

BSNT_06192___   1365 TTCTCACTC-GTCT--AACGAATAA-----   1386
                            || ||||  |.||.||.|     
RBAM_037260__   1382 -------TCGGTCTGGACCGGATGAAATGA   1404


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.