Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06183 and RBAM_037230

See Amino acid alignment / Visit BSNT_06183 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:38
# Commandline: needle
#    -asequence dna-align/BSNT_06183___rocF.1.9828.seq
#    -bsequence dna-align/RBAM_037230___rocF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06183___rocF-RBAM_037230___rocF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06183___rocF-RBAM_037230___rocF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06183___rocF
# 2: RBAM_037230___rocF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity:     721/894 (80.6%)
# Similarity:   721/894 (80.6%)
# Gaps:           6/894 ( 0.7%)
# Score: 2915.0
# 
#
#=======================================

BSNT_06183___      1 ATGGATAAAACGATTTCGGTTATTGGAATGCCAATGGATTTAGGACAAGC     50
                     |||.|.||.|..||.||.||||||||||||||.|||||||||||||||||
RBAM_037230__      1 ATGAACAAGAATATCTCAGTTATTGGAATGCCGATGGATTTAGGACAAGC     50

BSNT_06183___     51 ACGACGCGGAGTAGATATGGGCCCGAGTGCCATCCGGTACGCTCATCTGA    100
                     ||||||||||||.||.|||||||||||.||||||||.|||||.|||||.|
RBAM_037230__     51 ACGACGCGGAGTGGACATGGGCCCGAGCGCCATCCGTTACGCGCATCTCA    100

BSNT_06183___    101 TCGAGCGGCTGTCAGACATGGGGTATACGGTTGAAGATCTCGGTGACATT    150
                     |.||.|||.|.||.||||||||||||.||||.|||||..|.||.|||||.
RBAM_037230__    101 TTGAACGGTTATCTGACATGGGGTATGCGGTGGAAGACTTAGGCGACATC    150

BSNT_06183___    151 CCGATCAACCGCGAAAAAATCAAAAATGACGAGGAACTGAAAAACCTGAA    200
                     ||..||||.||.||||||.||||||||||.||.||.||||||||.|||||
RBAM_037230__    151 CCCGTCAATCGTGAAAAACTCAAAAATGATGAAGAGCTGAAAAATCTGAA    200

BSNT_06183___    201 TTCCGTTTTGGCGGGAAATGAAAAACTCGCGCAAAAGGTCAACAAAGTCA    250
                     .||.||..|..||||.||.||..|.|||||.||||||||..|||..||||
RBAM_037230__    201 CTCTGTGCTCTCGGGGAACGAGCAGCTCGCCCAAAAGGTGGACAGCGTCA    250

BSNT_06183___    251 TTGAAGAGAAAAA---ATTCCCGCTTGTCCTGGGCGGTGACCACAGTATT    297
                     ||   |||||..|   .|||||.||.|||.|||||||.||.|||||.||.
RBAM_037230__    251 TT---GAGAATGAGCGGTTCCCTCTCGTCTTGGGCGGCGATCACAGCATC    297

BSNT_06183___    298 GCGATCGGCACGCTTGCAGGCACAGCGAAGCATTACGATAATCTCGGCGT    347
                     ||||||||.|||||..||||.||.||.|||||.||..|..|.||||||||
RBAM_037230__    298 GCGATCGGAACGCTGACAGGAACGGCAAAGCACTATAAACAGCTCGGCGT    347

BSNT_06183___    348 CATCTGGTATGACGCGCACGGCGATTTGAATACACTTGAAACTTCACCAT    397
                     |||||||||.||||||||||||||.||.||.||.||.|||||.||.||.|
RBAM_037230__    348 CATCTGGTACGACGCGCACGGCGACTTAAACACGCTGGAAACATCGCCGT    397

BSNT_06183___    398 CGGGCAATATTCACGGCATGCCGCTCGCGGTCAGCCTCGGCATTGGCCAC    447
                     |.||||||||||||||.||||||||.||.||||||||||||.|.||.|||
RBAM_037230__    398 CAGGCAATATTCACGGAATGCCGCTGGCCGTCAGCCTCGGCGTCGGGCAC    447

BSNT_06183___    448 GAGTCACTGGTTAACCTTGAAGGCTACGCGCCTAAAATCAAACCGGAAAA    497
                     ||..|.|||||.||.||.|..||.||.||.||.||||||||.|||||.||
RBAM_037230__    448 GACACGCTGGTGAATCTGGGCGGGTATGCCCCGAAAATCAAGCCGGAGAA    497

BSNT_06183___    498 CGTCGTCATCATTGGCGCCCGGTCACTTGATGAAGGGGAGCGCAAGTACA    547
                     ||||||||||||.|||||..|.||.|||||||||||.|||||..||||||
RBAM_037230__    498 CGTCGTCATCATCGGCGCGAGATCGCTTGATGAAGGCGAGCGTGAGTACA    547

BSNT_06183___    548 TTAAGGAAAGCGGCATGAAGGTGTACACAATGCACGAAATCGACCGTCTT    597
                     |||||||||..|||||||||||.||.||.|||||.||.||.|||||.||.
RBAM_037230__    548 TTAAGGAAACAGGCATGAAGGTCTATACGATGCATGAGATTGACCGCCTC    597

BSNT_06183___    598 GGCATGACAAAGGTCATTGAAGAAACCCTTGATTATTTATCAGCATGTGA    647
                     |||||||||||||||||||||||||||.||||.||.||.||||..|||||
RBAM_037230__    598 GGCATGACAAAGGTCATTGAAGAAACCATTGACTACTTGTCAGACTGTGA    647

BSNT_06183___    648 TGGCGTCCATCTGAGCCTTGATCTGGACGGACTTGATCCGAACGACGCAC    697
                     .|||||.||.||.||||||||.||.|||||.||||||||||.||||||.|
RBAM_037230__    648 CGGCGTTCACCTCAGCCTTGACCTCGACGGCCTTGATCCGAGCGACGCGC    697

BSNT_06183___    698 CGGGTGTCGGAACCCCTGTCGTCGGCGGCATCAGCTATCGGGAGAGCCAT    747
                     |.||.||.||.||.|||||||||||||||||||||||.||.||.||||||
RBAM_037230__    698 CCGGCGTAGGCACGCCTGTCGTCGGCGGCATCAGCTACCGTGAAAGCCAT    747

BSNT_06183___    748 TTGGCTATGGAAATGCTGTATGACGCAGGCATCATTACCTCAGCCGAATT    797
                     |||||.|||||||||||||||||.||.|.||||||.||.|||||.|||||
RBAM_037230__    748 TTGGCAATGGAAATGCTGTATGATGCCGACATCATCACTTCAGCTGAATT    797

BSNT_06183___    798 CGTTGAGGTTAACCCGATCCTTGATCACAAAAACAAAACGGGCAAAACAG    847
                     .||.||.||.|||||||||||.|||||||||||||||||.||||||||||
RBAM_037230__    798 TGTCGAAGTCAACCCGATCCTCGATCACAAAAACAAAACCGGCAAAACAG    847

BSNT_06183___    848 CAGTAGAGCTGGTAGAATCTCTGCTAGGGAAGAAGCTGCTGTAA    891
                     |.||.||||||||.||||||.||.||||.||.||.|||.|.|||
RBAM_037230__    848 CGGTCGAGCTGGTGGAATCTTTGTTAGGAAAAAAACTGTTATAA    891


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