Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06179 and RBAM_037190

See Amino acid alignment / Visit BSNT_06179 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:38
# Commandline: needle
#    -asequence dna-align/BSNT_06179___yycO.1.9828.seq
#    -bsequence dna-align/RBAM_037190___yycO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06179___yycO-RBAM_037190___yycO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06179___yycO-RBAM_037190___yycO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06179___yycO
# 2: RBAM_037190___yycO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 784
# Identity:     539/784 (68.8%)
# Similarity:   539/784 (68.8%)
# Gaps:          80/784 (10.2%)
# Score: 1843.0
# 
#
#=======================================

BSNT_06179___      1 ATGAAGTTGAAGAAACGAGTGTCGATGTT----------------TTTG-     33
                     |||    ||.|.|||        |.||||                |||| 
RBAM_037190__      1 ATG----TGTAAAAA--------GCTGTTCAAAGCCGTCCTCCCGTTTGC     38

BSNT_06179___     34 ---GTAGCGCTTACAATGTGCGGCGGCCTGTT-TGT--TTCTCC------     71
                        ||  |..|.||.|||           ||| |||  ||||||      
RBAM_037190__     39 CCTGT--CATTCACCATG-----------GTTCTGTCATTCTCCGGTATG     75

BSNT_06179___     72 --CGCCAAAGCCGTAAAG-ACCACAAA-------TTATGCTGAAGAAATC    111
                       .|..|||||  .|||| |.||.|||       .||.||..||||||||
RBAM_037190__     76 AATGTAAAAGC--AAAAGAAACAGAAACAGCCCGCTACGCAAAAGAAATC    123

BSNT_06179___    112 GCCGCACTGCAGCCAGGCACGACACCGGAAGAAATCATGAAATCTGCCAG    161
                     ||.|..||.||||..||||||||.||..||||..|..|..||||.||||.
RBAM_037190__    124 GCAGAGCTTCAGCAGGGCACGACTCCTCAAGACGTTCTCCAATCCGCCAA    173

BSNT_06179___    162 CCAGATTGCCAAACAACAGCACGT----AAAGCAGGATGTTATCCTAAAA    207
                     ..||.||||||||||..|||||||    |.||.||.|    ||.||.||.
RBAM_037190__    174 AGAGCTTGCCAAACAGAAGCACGTTTCAACAGAAGCA----ATTCTCAAG    219

BSNT_06179___    208 CAGTTCTATAAGGAAATCACGGCTGATAAAGCAGAGGGAGACCGGCTCG-    256
                     |||||..||.|.|||||||||||.||.||.|...|||||.|.....||| 
RBAM_037190__    220 CAGTTTCATCAAGAAATCACGGCAGACAAGGTGCAGGGAAATGTAATCGC    269

BSNT_06179___    257 --CCAAGGAAAGCGGCATGTCTATCATGGGCGGCTCGTCCGGCACGAAAA    304
                       ||||.|||   ||..|.|||...||||||||.|||||.||.||.||||
RBAM_037190__    270 TTCCAAAGAA---GGGCTCTCTGCGATGGGCGGATCGTCAGGAACCAAAA    316

BSNT_06179___    305 AACTCCCGACAAGCGCGAAAGGCAATATCTATTACACGAACTCCTACACA    354
                     ||||.||||.||||.|.|||||||||||.||||||||||||||.|||||.
RBAM_037190__    317 AACTTCCGAAAAGCACAAAAGGCAATATTTATTACACGAACTCATACACC    366

BSNT_06179___    355 GCCTACTACAATCACGGCCACGTCGGCATGTACTCCGCTGCTGACAAAAT    404
                     ||.||.|||||.|||||.||.|||||||||||.||..|.|||||.|||||
RBAM_037190__    367 GCTTATTACAACCACGGGCATGTCGGCATGTATTCATCCGCTGATAAAAT    416

BSNT_06179___    405 TGTTGAATCTGTCCCGAGCGACGGCGTCAGGCAGATCGCTTATAATGCCA    454
                     |||||||||.||.|||.|.|||||||||.|.|||||.||||||||.|.||
RBAM_037190__    417 TGTTGAATCCGTGCCGGGAGACGGCGTCCGCCAGATTGCTTATAACGGCA    466

BSNT_06179___    455 GAGACGTGGAAGACAACTCCATTGTGCAAACCGTCAGCGTATCCTCATCT    504
                     ||||.||.||||||||.||.||.||.||.|||||.|..||..||....|.
RBAM_037190__    467 GAGAAGTCGAAGACAATTCAATCGTCCAGACCGTGAAAGTCACCGACGCC    516

BSNT_06179___    505 CAAAAAACAGCTGCTGCCGACTGGGCGGTATCAAAAGTAGGCGACCCATA    554
                     ||||||..|||.||.||.||||||||.|||||||.|||.||.||....||
RBAM_037190__    517 CAAAAACAAGCCGCCGCTGACTGGGCTGTATCAAGAGTCGGTGATGAGTA    566

BSNT_06179___    555 CTCATTTAACTTCGTCAATAACAGAAATACCGGCCATGACGGCGCCAAAA    604
                     |||.||.|||||||||||||||||||||||.||||||||.||||||||||
RBAM_037190__    567 CTCCTTCAACTTCGTCAATAACAGAAATACGGGCCATGAAGGCGCCAAAA    616

BSNT_06179___    605 ACTGTTCAAAGCTCCTATGGTCTGCCTTTTTGCTGAAAGCAGGCATTGAT    654
                     ||||.|||||.||.||.|||||.||.||..|..|.|||||.||.||||||
RBAM_037190__    617 ACTGCTCAAAACTGCTGTGGTCGGCATTCCTCTTAAAAGCCGGGATTGAT    666

BSNT_06179___    655 ATAGACAGCAACGGAGGCTTAGGCGTGTATCCGCGCGACATCACAAGTTC    704
                     ||.|||...||.||.|||||||||||.||.|||||||||||||||||.||
RBAM_037190__    667 ATCGACTCTAATGGCGGCTTAGGCGTATACCCGCGCGACATCACAAGCTC    716

BSNT_06179___    705 TTCGTATACGACAACCATCATGACCATCAACTAA    738
                     .||.||.||..|.||.||..|||||||..|||||
RBAM_037190__    717 GTCCTACACAGCCACGATTCTGACCATTCACTAA    750


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06179 and RBAM_037190

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
