Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06178 and RBAM_037180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:38
# Commandline: needle
# -asequence dna-align/BSNT_06178___yycP.1.9828.seq
# -bsequence dna-align/RBAM_037180___yycP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06178___yycP-RBAM_037180___yycP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06178___yycP-RBAM_037180___yycP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06178___yycP
# 2: RBAM_037180___yycP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1278
# Identity: 808/1278 (63.2%)
# Similarity: 808/1278 (63.2%)
# Gaps: 234/1278 (18.3%)
# Score: 2399.5
#
#
#=======================================
BSNT_06178___ 1 ATGAAAAA------GTGGA---------TGATTACCATCGCCATGCTGAT 35
.||||||| .|||| |||| ||||||| ||
RBAM_037180__ 1 GTGAAAAAAATCATTTGGATACCCTTAGTGAT---CATCGCC--GC---- 41
BSNT_06178___ 36 TCTCGCAGGAATCGCACTATTTG--TCTTCATTTTTCC------------ 71
||||| ||..|| |.|| ||||| |.|||||
RBAM_037180__ 42 ---CGCAG----CGGTCT-TATGCTTCTTC-TATTTCCGCACGGAAGATC 82
BSNT_06178___ 72 ---------TAGCCATA-AAACTGTAAGTCACCAGGATCTTCGAGACTCC 111
|.||.|.| |.||..|||.|.|||..|||.|||
RBAM_037180__ 83 CTGCGGAGGTTGCGAGAGACACATTAAATGACCCTGATTTTC-------- 124
BSNT_06178___ 112 GGTTTCTTGGATGACAAAGAAGTCCTGTTATATTTTTCAACCTCTGCGGA 161
||.|.||.|||||.|..|||.|.||.||.||.||..|.||.||
RBAM_037180__ 125 -------TGAAAGATAAAGAGGCGCTGCTGTACTTCTCCACTGCGGCTGA 167
BSNT_06178___ 162 TCAAGATGCATTTGGCGGCGGGAAAAGCTATGCCTTGTTTATCAGCC--- 208
.|||||..|.||.||||||||.||||||||||||.|.|| .|||
RBAM_037180__ 168 CCAAGACACGTTCGGCGGCGGAAAAAGCTATGCCCTCTT----CGCCGAT 213
BSNT_06178___ 209 -----AGGACGGGTCGCTGTCTTCCTTTCAGATGAAGGGCCTTGAGCTGG 253
|||||| |||.|||||.|.|||.||||||||.||||||||.|
RBAM_037180__ 214 GAAAAAGGACG----GCTTTCTTCTTATCACATGAAGGGGCTTGAGCTCG 259
BSNT_06178___ 254 GATCAGCCAAGGTTCACGGCGACAGTGTGATGCTGGAGGACAAAAACAAG 303
|.||.|||||.||.||.|.||.|||.|||.||||||||||||||| |||
RBAM_037180__ 260 GGTCGGCCAAAGTGCATGACGGCAGCGTGCTGCTGGAGGACAAAA--AAG 307
BSNT_06178___ 304 --ATTTATA-CGATCAAAAACGGTCTGCGCTCCCATAAAAGAACCTATCA 350
||.||.| ||.|| ||||.||.||.|.|.|..||||||||.|.||.||
RBAM_037180__ 308 GAATCTACACCGTTC-AAAATGGCCTTCACACATATAAAAGAGCGTACCA 356
BSNT_06178___ 351 GCACACAGGCGACAGCGCAGGCTTTCTGCAAAACACGG----ACGGCTTT 396
|||.||.||.||||||||.||.|.|.|..| |||| |.||||||
RBAM_037180__ 357 GCATACGGGAGACAGCGCGGGATATATCGA----ACGGGCGAAAGGCTTT 402
BSNT_06178___ 397 TATACCTTATACAACTCCGGCTACGACAAAAAGGGAGACGGGTACCGCTC 446
||.||..|.||.||.||.|||||||||||.|..||.|.|.|.||.|||||
RBAM_037180__ 403 TACACGCTGTATAATTCGGGCTACGACAAGAGCGGCGGCAGCTATCGCTC 452
BSNT_06178___ 447 AGAGCTGTACCGCCAGATGAACGG-AGAGTGGAAAAAAGACGTCATCCCC 495
|||||||||.||||||||..|||| || ||||||..||||||||||.||.
RBAM_037180__ 453 AGAGCTGTATCGCCAGATTGACGGCAG-GTGGAAGCAAGACGTCATTCCG 501
BSNT_06178___ 496 TACTACATCCGGGCCTCCGGTTTTCATAAGGGCACCA--TTTACGCACTC 543
.||||.|||||.||.||.||.|||..|||.| |.|| |||.|||||||
RBAM_037180__ 502 CACTATATCCGCGCTTCAGGCTTTTTTAAAG--ATCATCTTTTCGCACTC 549
BSNT_06178___ 544 GTTCCGACAACTGACGAAAAAGGTTATCAGCTCCTTC---AGATTCAAGC 590
...||||||..||||||||||||.||||| |.||| |.|||||.||
RBAM_037180__ 550 ACGCCGACAGATGACGAAAAAGGCTATCA---CGTTCAAGACATTCAGGC 596
BSNT_06178___ 591 AGATCAAAG-GAAGCTC------ACTT--ATC---ACAAG-----ATAAC 623
.||| |||| .|||||| ||.| ||| |||.| ||||
RBAM_037180__ 597 TGAT-AAAGAAAAGCTCCATACAACATCAATCGCGACATGGACGTATAA- 644
BSNT_06178___ 624 AGAATGGCAGTACCGGGAAGGAGCCTCAGTCGAATCCCAGCTTGCTGTGG 673
|| |||||| |.||.||||||||||||||.||.|..|
RBAM_037180__ 645 AG-ATGGCA--------------CGTCTGTCGAATCCCAGCTCGCCGCCG 679
BSNT_06178___ 674 ACGACCAAG------CTGTTTATGTTATGGTTC--GCGGCCAAAAAGCCC 715
||||| || |||.|| |||.| | |.||..|||||
RBAM_037180__ 680 ACGAC--AGCGCCGTCTGCTT-TGTCA-----CCAGAGGGGAAAAA---- 717
BSNT_06178___ 716 GCA-ATC---TCTATCAAATGGTCAAGATCAACAAAAAAAGCGGC----- 756
||| ||| |||||||||||||.||..|.|..|.|||.||||||
RBAM_037180__ 718 GCAGATCACATCTATCAAATGGTGAAAGTTATGAGAAAGAGCGGCGCCAT 767
BSNT_06178___ 757 ---AAAGTAGAGCTGCACGACATCGACGAATACAAAAACGACGAACAAAC 803
||.|| |.|||||||.||..||.|||||.||||||||.||
RBAM_037180__ 768 CAAAACGT--------ATGACATCGCCGCTTATAAAAATGACGAACAGAC 809
BSNT_06178___ 804 GATATACAGCTCCATGCCCTTCAGCTTTAAAAACAGCTTTTTCCCTTATG 853
|||.||...|||||||||.||||||||.|||||.||||||||| |||
RBAM_037180__ 810 GATCTATGACTCCATGCCGTTCAGCTTCAAAAAAAGCTTTTTC----ATG 855
BSNT_06178___ 854 ----ACGGGAACCTGTATTTCATTGACGGCTTCGGAAAGGTACACAAAAT 899
|..|.|.|.|.||||||.|||||||||||||||..||..||...||
RBAM_037180__ 856 GAGCAGCGCAGCTTCTATTTCGTTGACGGCTTCGGAACCGTCTACCGCAT 905
BSNT_06178___ 900 TGATGCCAAGACAGGA-AAAACAAGCATCGCCTTCA--CCTTTTCCCAGG 946
..|..|..||||.||| |||.||| .|..||||||| | ||||.|.
RBAM_037180__ 906 CAACCCTGAGACCGGACAAAGCAA-AAAAGCCTTCAAGC----TCCCCGC 950
BSNT_06178___ 947 ACAA--AATGAAAGCCGATTTCAAAGAAATCAC---CCAAAAAGGCAGCA 991
|..| ||||||||||||.||||||||..|.|| .|||||.||.| |
RBAM_037180__ 951 ATCACGAATGAAAGCCGACTTCAAAGAGCTGACGCATCAAAACGGAA--A 998
BSNT_06178___ 992 GCCTCTATTTCTTCACATACACGC-ATAACAAGCCTGCCTACATTGAACA 1040
| ||.|||.|.||.||.|||| || |.||.|||||.|||.|.||.|||..
RBAM_037180__ 999 G-CTGTATCTGTTTACGTACA-GCTACAAAAAGCCCGCCAAAATCGAATC 1046
BSNT_06178___ 1041 GTACAGCCTGAAAACCGGAAAGAAATTGAAAGA---AA-------AAGAG 1080
.|.|..|||||||||.||.||.|||.||||.|| || |
RBAM_037180__ 1047 CTTCGACCTGAAAACGGGCAAAAAACTGAACGACCGAACCATCCCA---- 1092
BSNT_06178___ 1081 ATTGGGAAGGTAAAGGATGTCGTGACGCCGAAGAGTCATTTGAAGCTGTA 1130
||..||||..|..||||.||||||||.||.|||.|.||||||||
RBAM_037180__ 1093 ------AACCTAAAAAACATCGTCACGCCGAAAAGCCATCTCAAGCTGTA 1136
BSNT_06178___ 1131 TGATTTTGAGGTGATGAAGAGGTTTTAA 1158
||||.|..||||||||....||||||.|
RBAM_037180__ 1137 TGATGTGCAGGTGATGGGTGGGTTTTGA 1164
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