Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06178 and RBAM_037180

See Amino acid alignment / Visit BSNT_06178 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:38
# Commandline: needle
#    -asequence dna-align/BSNT_06178___yycP.1.9828.seq
#    -bsequence dna-align/RBAM_037180___yycP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06178___yycP-RBAM_037180___yycP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06178___yycP-RBAM_037180___yycP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06178___yycP
# 2: RBAM_037180___yycP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1278
# Identity:     808/1278 (63.2%)
# Similarity:   808/1278 (63.2%)
# Gaps:         234/1278 (18.3%)
# Score: 2399.5
# 
#
#=======================================

BSNT_06178___      1 ATGAAAAA------GTGGA---------TGATTACCATCGCCATGCTGAT     35
                     .|||||||      .||||         ||||   |||||||  ||    
RBAM_037180__      1 GTGAAAAAAATCATTTGGATACCCTTAGTGAT---CATCGCC--GC----     41

BSNT_06178___     36 TCTCGCAGGAATCGCACTATTTG--TCTTCATTTTTCC------------     71
                        |||||    ||..|| |.||  ||||| |.|||||            
RBAM_037180__     42 ---CGCAG----CGGTCT-TATGCTTCTTC-TATTTCCGCACGGAAGATC     82

BSNT_06178___     72 ---------TAGCCATA-AAACTGTAAGTCACCAGGATCTTCGAGACTCC    111
                              |.||.|.| |.||..|||.|.|||..|||.|||        
RBAM_037180__     83 CTGCGGAGGTTGCGAGAGACACATTAAATGACCCTGATTTTC--------    124

BSNT_06178___    112 GGTTTCTTGGATGACAAAGAAGTCCTGTTATATTTTTCAACCTCTGCGGA    161
                            ||.|.||.|||||.|..|||.|.||.||.||.||..|.||.||
RBAM_037180__    125 -------TGAAAGATAAAGAGGCGCTGCTGTACTTCTCCACTGCGGCTGA    167

BSNT_06178___    162 TCAAGATGCATTTGGCGGCGGGAAAAGCTATGCCTTGTTTATCAGCC---    208
                     .|||||..|.||.||||||||.||||||||||||.|.||    .|||   
RBAM_037180__    168 CCAAGACACGTTCGGCGGCGGAAAAAGCTATGCCCTCTT----CGCCGAT    213

BSNT_06178___    209 -----AGGACGGGTCGCTGTCTTCCTTTCAGATGAAGGGCCTTGAGCTGG    253
                          ||||||    |||.|||||.|.|||.||||||||.||||||||.|
RBAM_037180__    214 GAAAAAGGACG----GCTTTCTTCTTATCACATGAAGGGGCTTGAGCTCG    259

BSNT_06178___    254 GATCAGCCAAGGTTCACGGCGACAGTGTGATGCTGGAGGACAAAAACAAG    303
                     |.||.|||||.||.||.|.||.|||.|||.|||||||||||||||  |||
RBAM_037180__    260 GGTCGGCCAAAGTGCATGACGGCAGCGTGCTGCTGGAGGACAAAA--AAG    307

BSNT_06178___    304 --ATTTATA-CGATCAAAAACGGTCTGCGCTCCCATAAAAGAACCTATCA    350
                       ||.||.| ||.|| ||||.||.||.|.|.|..||||||||.|.||.||
RBAM_037180__    308 GAATCTACACCGTTC-AAAATGGCCTTCACACATATAAAAGAGCGTACCA    356

BSNT_06178___    351 GCACACAGGCGACAGCGCAGGCTTTCTGCAAAACACGG----ACGGCTTT    396
                     |||.||.||.||||||||.||.|.|.|..|    ||||    |.||||||
RBAM_037180__    357 GCATACGGGAGACAGCGCGGGATATATCGA----ACGGGCGAAAGGCTTT    402

BSNT_06178___    397 TATACCTTATACAACTCCGGCTACGACAAAAAGGGAGACGGGTACCGCTC    446
                     ||.||..|.||.||.||.|||||||||||.|..||.|.|.|.||.|||||
RBAM_037180__    403 TACACGCTGTATAATTCGGGCTACGACAAGAGCGGCGGCAGCTATCGCTC    452

BSNT_06178___    447 AGAGCTGTACCGCCAGATGAACGG-AGAGTGGAAAAAAGACGTCATCCCC    495
                     |||||||||.||||||||..|||| || ||||||..||||||||||.||.
RBAM_037180__    453 AGAGCTGTATCGCCAGATTGACGGCAG-GTGGAAGCAAGACGTCATTCCG    501

BSNT_06178___    496 TACTACATCCGGGCCTCCGGTTTTCATAAGGGCACCA--TTTACGCACTC    543
                     .||||.|||||.||.||.||.|||..|||.|  |.||  |||.|||||||
RBAM_037180__    502 CACTATATCCGCGCTTCAGGCTTTTTTAAAG--ATCATCTTTTCGCACTC    549

BSNT_06178___    544 GTTCCGACAACTGACGAAAAAGGTTATCAGCTCCTTC---AGATTCAAGC    590
                     ...||||||..||||||||||||.|||||   |.|||   |.|||||.||
RBAM_037180__    550 ACGCCGACAGATGACGAAAAAGGCTATCA---CGTTCAAGACATTCAGGC    596

BSNT_06178___    591 AGATCAAAG-GAAGCTC------ACTT--ATC---ACAAG-----ATAAC    623
                     .||| |||| .||||||      ||.|  |||   |||.|     |||| 
RBAM_037180__    597 TGAT-AAAGAAAAGCTCCATACAACATCAATCGCGACATGGACGTATAA-    644

BSNT_06178___    624 AGAATGGCAGTACCGGGAAGGAGCCTCAGTCGAATCCCAGCTTGCTGTGG    673
                     || ||||||              |.||.||||||||||||||.||.|..|
RBAM_037180__    645 AG-ATGGCA--------------CGTCTGTCGAATCCCAGCTCGCCGCCG    679

BSNT_06178___    674 ACGACCAAG------CTGTTTATGTTATGGTTC--GCGGCCAAAAAGCCC    715
                     |||||  ||      |||.|| |||.|     |  |.||..|||||    
RBAM_037180__    680 ACGAC--AGCGCCGTCTGCTT-TGTCA-----CCAGAGGGGAAAAA----    717

BSNT_06178___    716 GCA-ATC---TCTATCAAATGGTCAAGATCAACAAAAAAAGCGGC-----    756
                     ||| |||   |||||||||||||.||..|.|..|.|||.||||||     
RBAM_037180__    718 GCAGATCACATCTATCAAATGGTGAAAGTTATGAGAAAGAGCGGCGCCAT    767

BSNT_06178___    757 ---AAAGTAGAGCTGCACGACATCGACGAATACAAAAACGACGAACAAAC    803
                        ||.||        |.|||||||.||..||.|||||.||||||||.||
RBAM_037180__    768 CAAAACGT--------ATGACATCGCCGCTTATAAAAATGACGAACAGAC    809

BSNT_06178___    804 GATATACAGCTCCATGCCCTTCAGCTTTAAAAACAGCTTTTTCCCTTATG    853
                     |||.||...|||||||||.||||||||.|||||.|||||||||    |||
RBAM_037180__    810 GATCTATGACTCCATGCCGTTCAGCTTCAAAAAAAGCTTTTTC----ATG    855

BSNT_06178___    854 ----ACGGGAACCTGTATTTCATTGACGGCTTCGGAAAGGTACACAAAAT    899
                         |..|.|.|.|.||||||.|||||||||||||||..||..||...||
RBAM_037180__    856 GAGCAGCGCAGCTTCTATTTCGTTGACGGCTTCGGAACCGTCTACCGCAT    905

BSNT_06178___    900 TGATGCCAAGACAGGA-AAAACAAGCATCGCCTTCA--CCTTTTCCCAGG    946
                     ..|..|..||||.||| |||.||| .|..|||||||  |    ||||.|.
RBAM_037180__    906 CAACCCTGAGACCGGACAAAGCAA-AAAAGCCTTCAAGC----TCCCCGC    950

BSNT_06178___    947 ACAA--AATGAAAGCCGATTTCAAAGAAATCAC---CCAAAAAGGCAGCA    991
                     |..|  ||||||||||||.||||||||..|.||   .|||||.||.|  |
RBAM_037180__    951 ATCACGAATGAAAGCCGACTTCAAAGAGCTGACGCATCAAAACGGAA--A    998

BSNT_06178___    992 GCCTCTATTTCTTCACATACACGC-ATAACAAGCCTGCCTACATTGAACA   1040
                     | ||.|||.|.||.||.|||| || |.||.|||||.|||.|.||.|||..
RBAM_037180__    999 G-CTGTATCTGTTTACGTACA-GCTACAAAAAGCCCGCCAAAATCGAATC   1046

BSNT_06178___   1041 GTACAGCCTGAAAACCGGAAAGAAATTGAAAGA---AA-------AAGAG   1080
                     .|.|..|||||||||.||.||.|||.||||.||   ||       |    
RBAM_037180__   1047 CTTCGACCTGAAAACGGGCAAAAAACTGAACGACCGAACCATCCCA----   1092

BSNT_06178___   1081 ATTGGGAAGGTAAAGGATGTCGTGACGCCGAAGAGTCATTTGAAGCTGTA   1130
                           ||..||||..|..||||.||||||||.||.|||.|.||||||||
RBAM_037180__   1093 ------AACCTAAAAAACATCGTCACGCCGAAAAGCCATCTCAAGCTGTA   1136

BSNT_06178___   1131 TGATTTTGAGGTGATGAAGAGGTTTTAA   1158
                     ||||.|..||||||||....||||||.|
RBAM_037180__   1137 TGATGTGCAGGTGATGGGTGGGTTTTGA   1164


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