Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04814 and RBAM_037050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_04814___pucA.1.9828.seq
# -bsequence dna-align/RBAM_037050.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04814___pucA-RBAM_037050.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04814___pucA-RBAM_037050.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04814___pucA
# 2: RBAM_037050
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1193
# Identity: 568/1193 (47.6%)
# Similarity: 568/1193 (47.6%)
# Gaps: 433/1193 (36.3%)
# Score: 1219.0
#
#
#=======================================
BSNT_04814___ 0 -------------------------------------------------- 0
RBAM_037050 1 ATGGATGATATGCACCGGATTTTGGATGTCATCGCCAATTCTAAGAAAGC 50
BSNT_04814___ 1 -------ATGGCGACAATTGTTCAAGTTGAAGGCTCCGCGTATCGAAAAG 43
.||||.||.||.|||.||...||.||.|||||.|||...||||
RBAM_037050 51 TAAGGTACTGGCTACCATCGTTAAAACAGAGGGGTCCGCTTATAAGAAAG 100
BSNT_04814___ 44 CAGGCGCCTCTATGCT--CTTTAAG-----AAAAATGGCAGACGGATTGG 86
.|||.|||||.||||| .||||.| |||.|.| ||.||||.||
RBAM_037050 101 AAGGGGCCTCCATGCTGATTTTAGGGGATAAAACAAG--AGTCGGAATG- 147
BSNT_04814___ 87 CTTGCTGA-GCGGCGGGTGTGTGGAAGAAGATGTATTCCAA-----AGAA 130
|.| .||.|||.|||.|||||||||||.|..|..|| .|||
RBAM_037050 148 -----TTATCCGCCGGCTGTCTGGAAGAAGATCTCGTTGAACGGTCGGAA 192
BSNT_04814___ 131 TCAG---TGCGCTG--GGCGATCAGCTCACACCAACGCTGATT---CCCT 172
||| ||.|||| ||.||.| ||.||||| |.||
RBAM_037050 193 -CAGGTCTGGGCTGCAGGAGAGC------------CGTTGATTGTCCGCT 229
BSNT_04814___ 173 ACGACATGCGGTCGGAGGACGATCTTTCTTGGGG-CATGGGAGCCGGGTG 221
..||.|||.|..|||||||||||.|.||.||||| || |||....||.||
RBAM_037050 230 TTGATATGAGTGCGGAGGACGATTTATCCTGGGGACA-GGGCATTGGCTG 278
BSNT_04814___ 222 CAATGGCATGATT-----------------CATGTTCATG------CGGA 248
.||||| ||.|| |.|||..|.| .|||
RBAM_037050 279 TAATGG--TGTTTTGACGGTTTTACTTGAGCCTGTAAAAGGGGAATTGGA 326
BSNT_04814___ 249 GCGAA------------TCA-------CTCAG--GAAAAAAGGCGACACT 277
.|||| ||| ||.|| ||||||| |..||
RBAM_037050 327 ACGAAATCTGATGACAGTCAAGACATGCTTAGATGAAAAAA----AGTCT 372
BSNT_04814___ 278 ATGA---GAAAGTGAGGGATTGCCTTCATTCAGGCAAAGCTGTCACTTCC 324
.||| |||.|..|.| |||||...||| |
RBAM_037050 373 GTGACCCGAATGAAACG----------ATTCACTAAAA-----------C 401
BSNT_04814___ 325 GTTACA--------AAGAT-TGGATCCTCCCATTATTTATTTCTGACGGA 365
||||.| ||||| || ||..||.| |||
RBAM_037050 402 GTTAGAGCCGAAGGAAGATCTG-----------TACATAGT------GGA 434
BSNT_04814___ 366 GAACGG--GCAT-TTTGGCAACTGGCCGGACGCGCCTCTGCAAGA----- 407
..|||| ||.| ||||| |||.|| |||.| .|.||.||.|
RBAM_037050 435 AGACGGCAGCGTGTTTGG-AACCGG--GGATG---TTATGGAACAAGGCT 478
BSNT_04814___ 408 -TATTCAACGTACTGTTTCA-ACG-------------------------- 429
||||||| ..||||...|| |||
RBAM_037050 479 GTATTCAA-AAACTGAGACAGACGGAAAAGGGAATCAAAAGGGATGAACA 527
BSNT_04814___ 430 ---CT-TCATTTACCGCATT-----TCGATCAAA-----CCACTAACATG 465
|| |.|||| ||| ||.||||.| |||..|.|.||
RBAM_037050 528 TACCTCTGATTT-----ATTTTTTATCCATCAGATGGTGCCAAAACCTTG 572
BSNT_04814___ 466 TTTA------TTC--AGC----GAATTGAACCGAAGCCGCGTCTCATTCT 503
|||| ||| ||| ||| ||..|||||||| |..
RBAM_037050 573 TTTATATGTCTTCGGAGCAGGGGAA--GATGCGAAGCCG--------TTA 612
BSNT_04814___ 504 GTTTGGGGCGGGACCGGATACTGTACCGCTGGCCAATTTGGCGGCTGACA 553
||||.| |||||.||||.||
RBAM_037050 613 GTTTCG-------------------------------TTGGCAGCTGGCA 631
BSNT_04814___ 554 CAGGGTTTTCTGTTATCGTGACGGATTGGCGGCCCGCTTATTGTACATC- 602
|.||.|||..|||.|..||||..||.|||||.|||||||..||| ||||
RBAM_037050 632 CTGGCTTTCATGTGACGGTGATTGACTGGCGTCCCGCTTTATGT-CATCA 680
BSNT_04814___ 603 CTCTCTTTTTCCAAAAGCGGATCAGCTGATCACCGCTTTTCCGGAACAA- 651
|...|.||||||..||||.|..||..||||.||.|.....||||||.||
RBAM_037050 681 CGGCCATTTTCCTGAAGCCGGCCATTTGATAACAGGAGCACCGGAAGAAG 730
BSNT_04814___ 652 --ATG------CTTAGCGAATTTCAATTTTTTCCGAA--TGATGTAGCTG 691
||| ||.||| ||..||| || .|||.| ||
RBAM_037050 731 TCATGGAAGGTCTGAGC--ATGACAA---------AAAGGGATTT---TG 766
BSNT_04814___ 692 TTGTAGCAACCCATCAT----------TATCAGCACGATCAAACGATCAT 731
|||| |||.|| |.|||..|.||||| ||||||
RBAM_037050 767 TTGT-------CATAATGACGCACAGCTTTCAAAAAGATCA---GATCAT 806
BSNT_04814___ 732 CAACTTCTTATTTTC------TCAAAACC-------TCCATTATATTGGA 768
|||.| |.||||.| |...|||||..||
RBAM_037050 807 ----------TTTACATACATTAAAAAACGAGAATGTGTTTTATAAAGG- 845
BSNT_04814___ 769 CTGTTGGGTTCGGC-----AAACCGCACGAAACGGCT-----GCTGAACG 808
||..||.||| ||..|||||..|.||||| ||.||.||
RBAM_037050 846 ----TGTATTAGGCCCTAGAAGGCGCACCGAGCGGCTATTAGGCGGAGCG 891
BSNT_04814___ 809 GAAA---------ACATCCTCCGTCTCACTTTTACAGTCCGGTCGGGCTG 849
||.| |.|| ||| ||.| ||..||||.||.
RBAM_037050 892 GAGATTCCAGAGGATAT--------TCA---TTCC---CCTATCGGACTT 927
BSNT_04814___ 850 AAAATCGGTGCGGAAGGTCCAGAGGAAATTGCGGTAAGTGTAGTTGCAGA 899
...|||||.||..||||.||.|||||.|||||.|||||..|.||||..||
RBAM_037050 928 CCCATCGGGGCACAAGGCCCTGAGGAGATTGCTGTAAGCATTGTTGGCGA 977
BSNT_04814___ 900 AATCATTCAAACAA---GAAAAC---GGATAGCGGTTGTATGA 936
.||.|||||||.|| |||||| ||..||| |.|||||
RBAM_037050 978 GATGATTCAAAAAATGCGAAAACAAAGGTCAGC---TTTATGA 1017
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