Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03127 and RBAM_036860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03127___yocF.1.9828.seq
# -bsequence dna-align/RBAM_036860___yocF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03127___yocF-RBAM_036860___yocF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03127___yocF-RBAM_036860___yocF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03127___yocF
# 2: RBAM_036860___yocF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1175
# Identity: 810/1175 (68.9%)
# Similarity: 810/1175 (68.9%)
# Gaps: 100/1175 ( 8.5%)
# Score: 2735.0
#
#
#=======================================
BSNT_03127___ 1 ATGATTAAAAATCATTTTACATTTCAAAAACTAAACGGGATTACGCCCTA 50
||.||.||..||||||.||||||||||||.||.||||||.|.||.||
RBAM_036860__ 1 ---ATGAAGAAGTATTTTAAATTTCAAAAACTGAATGGGATTTCTCCTTA 47
BSNT_03127___ 51 TATATGGACGATATTTTTCATCCTCCCCTTCTACTTTATATGGAAATCAT 100
||||||||.|||.|||||||||.|.||.||.||.|||||.|..|||...|
RBAM_036860__ 48 TATATGGATGATTTTTTTCATCTTGCCTTTTTATTTTATTTTTAAAAGCT 97
BSNT_03127___ 101 CATCTACATTTGTTATTATTGTCGGCATCATTTTGACGCTTTTATTTTTT 150
|.|||||.|||||.||..|.|.||||||||||||.||.|||.| |||.||
RBAM_036860__ 98 CTTCTACCTTTGTCATCGTGGCCGGCATCATTTTCACACTTGT-TTTCTT 146
BSNT_03127___ 151 TCG-GTATATCGATTTGCTTTTGTCTCAAAAGGCTGGACCATTTATTTGT 199
|.| |.|||.||.||.||.|||||..|||||||||||.|..||||.||.|
RBAM_036860__ 147 TGGCGCATACCGCTTCGCATTTGTTGCAAAAGGCTGGCCGCTTTACTTAT 196
BSNT_03127___ 200 GGG-GATTTTTATTAATTGGCATTTCAACCGCCT---CCATTACCCTGTT 245
||| |.||.|| .|.||.||||||||.||||.|| |||| .|||||
RBAM_036860__ 197 GGGCGCTTCTT-CTGATCGGCATTTCGACCGGCTCAGCCAT---GCTGTT 242
BSNT_03127___ 246 CAGTTATATTTATTTTGCTTTTTTTATCGCGTATTT---------TATTG 286
|||||||||||||||.||.||.||||||||.||.|| |||..
RBAM_036860__ 243 CAGTTATATTTATTTCGCCTTCTTTATCGCCTACTTCATCGGCCATATCC 292
BSNT_03127___ 287 GAAACATTAAGGAACGCGTCCCTTTTCATATTTTATATTATGTCCATTTA 336
||.||| || ||.||.|||.|.||.||||||||..|.|||.|.
RBAM_036860__ 293 GAGACA------AA---GTTCCATTTTACATCTTATATTACATTCATATC 333
BSNT_03127___ 337 ATAAGCGCAGCCGTCGCAGCCAATTTCAGTCTCGTATTAAAAAAGGAATT 386
||.||.||.||.||.||.|.|||.|||||.||.||..|.|||||.||.|.
RBAM_036860__ 334 ATCAGTGCGGCGGTTGCCGTCAACTTCAGCCTTGTTCTGAAAAAAGAGTG 383
BSNT_03127___ 387 CTTTCTGACACAAATTCCTTTTGTCGTCATTACCCTCATCAGCGCAATTT 436
.|||.||||||||||.||.|||.||||||||||.||.|||||.||.||..
RBAM_036860__ 384 GTTTTTGACACAAATACCGTTTATCGTCATTACACTGATCAGTGCCATCC 433
BSNT_03127___ 437 TATTGCCCTTTAGTATAAGAAGCCGCAAGGAGCGCGAACGGCTTGAAGAA 486
|..|.||..|.||.||..|||||.|.||||..||.||.||.|||||.||.
RBAM_036860__ 434 TTCTCCCGCTCAGCATTCGAAGCAGAAAGGCACGGGAGCGCCTTGAGGAG 483
BSNT_03127___ 487 AAGCTCGAGGATGCAAATGAACGGATTGCAGAACTGGTAAAATTAGAAGA 536
||..|.||..||||||||||.||.||.||.||.||.||.||..|.|||||
RBAM_036860__ 484 AAATTAGAATATGCAAATGAGCGAATCGCCGATCTTGTGAAGCTGGAAGA 533
BSNT_03127___ 537 ACGTCAGCGAATTGCCCGCGATCTCCATGATACGCTTGGGCAAAAGCTTT 586
|.|.|||||.||.|||||.||.||.||.|||||.|||||.||||||||.|
RBAM_036860__ 534 AAGGCAGCGCATCGCCCGGGACCTTCACGATACACTTGGACAAAAGCTCT 583
BSNT_03127___ 587 CTCTT-ATCGGTTTAAAAAGCGACTTAGCAAGAAAATTGATATACAAAGA 635
| ||| |||||..|.|||||||||.|.||..||||..||||.|||||.||
RBAM_036860__ 584 C-CTTAATCGGACTGAAAAGCGACCTCGCCCGAAAGCTGATTTACAAGGA 632
BSNT_03127___ 636 TCCCGAACAAG-CAGCTCGTGAACTGAAAAGTGTTCAGCAAACAGCGCGA 684
.||.|||||.| |.||.| |||.||||||||.||.|||||.||.||.||.
RBAM_036860__ 633 CCCTGAACAGGCCCGCAC-TGAGCTGAAAAGCGTGCAGCAGACGGCCCGC 681
BSNT_03127___ 685 ACTTCTTTAAATGAAGTAAGAAAAATCGTTTCCTCTATGAAGGGCATACG 734
||.||.||||||||.||.|||||||||||.||.||.|||||.|||||.||
RBAM_036860__ 682 ACCTCCTTAAATGAGGTCAGAAAAATCGTCTCATCGATGAAAGGCATCCG 731
BSNT_03127___ 735 GCTCAAGGATGA-------ATTGATCAACATCAAACAAATTCTCGAAGCA 777
..|.|||||||| |.||.|| ..||||||||.|||||.
RBAM_036860__ 732 ATTGAAGGATGAGCTCGGCAATGTTC-------GGCAAATTCTTGAAGCG 774
BSNT_03127___ 778 GCTGACATTATGTTTATCTATGAAGAAGAGAAATGGCCCGAAAATATCTC 827
||.|..|||...|||.|.|||||||||.|..||..|||..||.|||||||
RBAM_036860__ 775 GCAGGAATTGAATTTGTGTATGAAGAAAAAGAAGCGCCAAAACATATCTC 824
BSNT_03127___ 828 ATTGCTGAATGAAAACATTTTGAGTATGTGCTTAAAGGAAGCTGTCACAA 877
..|||||||.||||||||..|.||.||||||.||||.|||||.|||||.|
RBAM_036860__ 825 TCTGCTGAACGAAAACATCGTCAGCATGTGCATAAAAGAAGCCGTCACCA 874
BSNT_03127___ 878 ATGTCGTCAAACACAGCCAGGCTAAAACTTGCCGAGTTGACATTCAGCAG 927
|||||||.|||||.|||...||.|||...|||||..|...||||||||||
RBAM_036860__ 875 ATGTCGTGAAACATAGCGGCGCCAAAGTATGCCGCATCACCATTCAGCAG 924
BSNT_03127___ 928 CTCTGGAAGGAAGTTGTGAT--------AACAGTGTCTGACGATGGAACA 969
||.|||||.||.|||||.|| ||.| ||||| |.|.|.
RBAM_036860__ 925 CTTTGGAAAGAGGTTGTCATTATGGTAGAAGA-----TGACG--GCAGCT 967
BSNT_03127___ 970 TTCAAAGGAGAAGAAAATTCC-----TTTTCAAAAGGACATGGCTTACTC 1014
|||||.|.| |||||.| || ||||||||.||.||.|||.|.||.
RBAM_036860__ 968 TTCAATGCA-AAGAAGA--CCGCTTTTTTTCAAAGGGGCACGGCCTGCTT 1014
BSNT_03127___ 1015 GGGATGAGAGAACGGCTTGAGTTTGCAAATGGAAGCCTTCA--CATCAAT 1062
||.|||||.|||||.|||||.||.|||||.||.|| ||.| ||||.||
RBAM_036860__ 1015 GGAATGAGGGAACGTCTTGAATTCGCAAACGGCAG--TTTAGCCATCGAT 1062
BSNT_03127___ 1063 ACCGAAAACGGAACCAAGCTTACCATGGCAATTCCTAATAATTCAAAATA 1112
||.|....||||||.|||||.||||||..|||.||.|||.|||||||||.
RBAM_036860__ 1063 ACAGCCGCCGGAACAAAGCTGACCATGAGAATCCCGAATGATTCAAAATC 1112
BSNT_03127___ 1113 A------------------------ 1113
|
RBAM_036860__ 1113 AAAAGAAAAGGATGGTAGCAGATGA 1137
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