Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03127 and RBAM_036860

See Amino acid alignment / Visit BSNT_03127 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_03127___yocF.1.9828.seq
#    -bsequence dna-align/RBAM_036860___yocF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03127___yocF-RBAM_036860___yocF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03127___yocF-RBAM_036860___yocF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03127___yocF
# 2: RBAM_036860___yocF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1175
# Identity:     810/1175 (68.9%)
# Similarity:   810/1175 (68.9%)
# Gaps:         100/1175 ( 8.5%)
# Score: 2735.0
# 
#
#=======================================

BSNT_03127___      1 ATGATTAAAAATCATTTTACATTTCAAAAACTAAACGGGATTACGCCCTA     50
                        ||.||.||..||||||.||||||||||||.||.||||||.|.||.||
RBAM_036860__      1 ---ATGAAGAAGTATTTTAAATTTCAAAAACTGAATGGGATTTCTCCTTA     47

BSNT_03127___     51 TATATGGACGATATTTTTCATCCTCCCCTTCTACTTTATATGGAAATCAT    100
                     ||||||||.|||.|||||||||.|.||.||.||.|||||.|..|||...|
RBAM_036860__     48 TATATGGATGATTTTTTTCATCTTGCCTTTTTATTTTATTTTTAAAAGCT     97

BSNT_03127___    101 CATCTACATTTGTTATTATTGTCGGCATCATTTTGACGCTTTTATTTTTT    150
                     |.|||||.|||||.||..|.|.||||||||||||.||.|||.| |||.||
RBAM_036860__     98 CTTCTACCTTTGTCATCGTGGCCGGCATCATTTTCACACTTGT-TTTCTT    146

BSNT_03127___    151 TCG-GTATATCGATTTGCTTTTGTCTCAAAAGGCTGGACCATTTATTTGT    199
                     |.| |.|||.||.||.||.|||||..|||||||||||.|..||||.||.|
RBAM_036860__    147 TGGCGCATACCGCTTCGCATTTGTTGCAAAAGGCTGGCCGCTTTACTTAT    196

BSNT_03127___    200 GGG-GATTTTTATTAATTGGCATTTCAACCGCCT---CCATTACCCTGTT    245
                     ||| |.||.|| .|.||.||||||||.||||.||   ||||   .|||||
RBAM_036860__    197 GGGCGCTTCTT-CTGATCGGCATTTCGACCGGCTCAGCCAT---GCTGTT    242

BSNT_03127___    246 CAGTTATATTTATTTTGCTTTTTTTATCGCGTATTT---------TATTG    286
                     |||||||||||||||.||.||.||||||||.||.||         |||..
RBAM_036860__    243 CAGTTATATTTATTTCGCCTTCTTTATCGCCTACTTCATCGGCCATATCC    292

BSNT_03127___    287 GAAACATTAAGGAACGCGTCCCTTTTCATATTTTATATTATGTCCATTTA    336
                     ||.|||      ||   ||.||.|||.|.||.||||||||..|.|||.|.
RBAM_036860__    293 GAGACA------AA---GTTCCATTTTACATCTTATATTACATTCATATC    333

BSNT_03127___    337 ATAAGCGCAGCCGTCGCAGCCAATTTCAGTCTCGTATTAAAAAAGGAATT    386
                     ||.||.||.||.||.||.|.|||.|||||.||.||..|.|||||.||.|.
RBAM_036860__    334 ATCAGTGCGGCGGTTGCCGTCAACTTCAGCCTTGTTCTGAAAAAAGAGTG    383

BSNT_03127___    387 CTTTCTGACACAAATTCCTTTTGTCGTCATTACCCTCATCAGCGCAATTT    436
                     .|||.||||||||||.||.|||.||||||||||.||.|||||.||.||..
RBAM_036860__    384 GTTTTTGACACAAATACCGTTTATCGTCATTACACTGATCAGTGCCATCC    433

BSNT_03127___    437 TATTGCCCTTTAGTATAAGAAGCCGCAAGGAGCGCGAACGGCTTGAAGAA    486
                     |..|.||..|.||.||..|||||.|.||||..||.||.||.|||||.||.
RBAM_036860__    434 TTCTCCCGCTCAGCATTCGAAGCAGAAAGGCACGGGAGCGCCTTGAGGAG    483

BSNT_03127___    487 AAGCTCGAGGATGCAAATGAACGGATTGCAGAACTGGTAAAATTAGAAGA    536
                     ||..|.||..||||||||||.||.||.||.||.||.||.||..|.|||||
RBAM_036860__    484 AAATTAGAATATGCAAATGAGCGAATCGCCGATCTTGTGAAGCTGGAAGA    533

BSNT_03127___    537 ACGTCAGCGAATTGCCCGCGATCTCCATGATACGCTTGGGCAAAAGCTTT    586
                     |.|.|||||.||.|||||.||.||.||.|||||.|||||.||||||||.|
RBAM_036860__    534 AAGGCAGCGCATCGCCCGGGACCTTCACGATACACTTGGACAAAAGCTCT    583

BSNT_03127___    587 CTCTT-ATCGGTTTAAAAAGCGACTTAGCAAGAAAATTGATATACAAAGA    635
                     | ||| |||||..|.|||||||||.|.||..||||..||||.|||||.||
RBAM_036860__    584 C-CTTAATCGGACTGAAAAGCGACCTCGCCCGAAAGCTGATTTACAAGGA    632

BSNT_03127___    636 TCCCGAACAAG-CAGCTCGTGAACTGAAAAGTGTTCAGCAAACAGCGCGA    684
                     .||.|||||.| |.||.| |||.||||||||.||.|||||.||.||.||.
RBAM_036860__    633 CCCTGAACAGGCCCGCAC-TGAGCTGAAAAGCGTGCAGCAGACGGCCCGC    681

BSNT_03127___    685 ACTTCTTTAAATGAAGTAAGAAAAATCGTTTCCTCTATGAAGGGCATACG    734
                     ||.||.||||||||.||.|||||||||||.||.||.|||||.|||||.||
RBAM_036860__    682 ACCTCCTTAAATGAGGTCAGAAAAATCGTCTCATCGATGAAAGGCATCCG    731

BSNT_03127___    735 GCTCAAGGATGA-------ATTGATCAACATCAAACAAATTCTCGAAGCA    777
                     ..|.||||||||       |.||.||       ..||||||||.|||||.
RBAM_036860__    732 ATTGAAGGATGAGCTCGGCAATGTTC-------GGCAAATTCTTGAAGCG    774

BSNT_03127___    778 GCTGACATTATGTTTATCTATGAAGAAGAGAAATGGCCCGAAAATATCTC    827
                     ||.|..|||...|||.|.|||||||||.|..||..|||..||.|||||||
RBAM_036860__    775 GCAGGAATTGAATTTGTGTATGAAGAAAAAGAAGCGCCAAAACATATCTC    824

BSNT_03127___    828 ATTGCTGAATGAAAACATTTTGAGTATGTGCTTAAAGGAAGCTGTCACAA    877
                     ..|||||||.||||||||..|.||.||||||.||||.|||||.|||||.|
RBAM_036860__    825 TCTGCTGAACGAAAACATCGTCAGCATGTGCATAAAAGAAGCCGTCACCA    874

BSNT_03127___    878 ATGTCGTCAAACACAGCCAGGCTAAAACTTGCCGAGTTGACATTCAGCAG    927
                     |||||||.|||||.|||...||.|||...|||||..|...||||||||||
RBAM_036860__    875 ATGTCGTGAAACATAGCGGCGCCAAAGTATGCCGCATCACCATTCAGCAG    924

BSNT_03127___    928 CTCTGGAAGGAAGTTGTGAT--------AACAGTGTCTGACGATGGAACA    969
                     ||.|||||.||.|||||.||        ||.|     |||||  |.|.|.
RBAM_036860__    925 CTTTGGAAAGAGGTTGTCATTATGGTAGAAGA-----TGACG--GCAGCT    967

BSNT_03127___    970 TTCAAAGGAGAAGAAAATTCC-----TTTTCAAAAGGACATGGCTTACTC   1014
                     |||||.|.| |||||.|  ||     ||||||||.||.||.|||.|.||.
RBAM_036860__    968 TTCAATGCA-AAGAAGA--CCGCTTTTTTTCAAAGGGGCACGGCCTGCTT   1014

BSNT_03127___   1015 GGGATGAGAGAACGGCTTGAGTTTGCAAATGGAAGCCTTCA--CATCAAT   1062
                     ||.|||||.|||||.|||||.||.|||||.||.||  ||.|  ||||.||
RBAM_036860__   1015 GGAATGAGGGAACGTCTTGAATTCGCAAACGGCAG--TTTAGCCATCGAT   1062

BSNT_03127___   1063 ACCGAAAACGGAACCAAGCTTACCATGGCAATTCCTAATAATTCAAAATA   1112
                     ||.|....||||||.|||||.||||||..|||.||.|||.|||||||||.
RBAM_036860__   1063 ACAGCCGCCGGAACAAAGCTGACCATGAGAATCCCGAATGATTCAAAATC   1112

BSNT_03127___   1113 A------------------------   1113
                     |                        
RBAM_036860__   1113 AAAAGAAAAGGATGGTAGCAGATGA   1137


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