Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06118 and RBAM_036840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:36
# Commandline: needle
# -asequence dna-align/BSNT_06118.1.9828.seq
# -bsequence dna-align/RBAM_036840___yxbG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06118-RBAM_036840___yxbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06118-RBAM_036840___yxbG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06118
# 2: RBAM_036840___yxbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity: 533/836 (63.8%)
# Similarity: 533/836 (63.8%)
# Gaps: 217/836 (26.0%)
# Score: 2221.5
#
#
#=======================================
BSNT_06118 0 -------------------------------------------------- 0
RBAM_036840__ 1 ATGGGAAGATTAACAGACAAAACCGCAATCATCACAGGGGCCGCGACAGG 50
BSNT_06118 0 -------------------------------------------------- 0
RBAM_036840__ 51 CATCGGACAAGCGACGGCACGGGTTTTCGCCGATGAAGGCGCCCGCGTGA 100
BSNT_06118 0 -------------------------------------------------- 0
RBAM_036840__ 101 TCTGCGGTGACATCAATGAAAGCGAACTGAATGAAACCGTCAGCGCCATC 150
BSNT_06118 1 ---------------------------------------GTGTCA---GA 8
||.||| ||
RBAM_036840__ 151 AGAAAAAACGGCGGAGAAGCAGAAGCCTTTCACCTTGATGTATCAAACGA 200
BSNT_06118 9 TGAAAACAGTGTGAAAG-CTTTTGCTGAC---------CAAATCAAGGAT 48
.|||||| || |||| |||||||.||| ||| |||
RBAM_036840__ 201 AGAAAAC---GT-AAAGTCTTTTGCAGACGGCATTCAGCAA---AAG--- 240
BSNT_06118 49 GCATGCGGAACGATTGATATTCTGTTTAATAATGCCGGCGTTGATCAGGA 98
|.||||||.||||||||||||||.||.|||||.||.|||||.||.||
RBAM_036840__ 241 ---TACGGAACAATTGATATTCTGTTCAACAATGCTGGTGTTGACCAAGA 287
BSNT_06118 99 GGGCGGAAAGGTGCACGAATATCCGGTTGACCTGTTTGACCGCATTATCG 148
|||||||||.||.||.|||||.|||||.||||||||||||||.||.||||
RBAM_036840__ 288 GGGCGGAAAAGTCCATGAATACCCGGTCGACCTGTTTGACCGGATCATCG 337
BSNT_06118 149 CCGTCGACCTGCGCGGCACGTTCCTTTGCAGCAAATATCTGATTCCGCTC 198
|||||||.|||||||||||.||.||.|||||||||||.||||||||||||
RBAM_036840__ 338 CCGTCGATCTGCGCGGCACATTTCTGTGCAGCAAATACCTGATTCCGCTC 387
BSNT_06118 199 ATGCTCGACAATGGAGGTTCTATCATCAACACCTCCTCCATGTCAGGCCG 248
||||||||.||.|||||.||.|||||||||||||||||||||||.|||||
RBAM_036840__ 388 ATGCTCGAAAAAGGAGGCTCCATCATCAACACCTCCTCCATGTCCGGCCG 437
BSNT_06118 249 CGCCGCGGATCTTGACCGCTCCGGCTATAACGCGGCAAAAGGCGGTATCA 298
.|||||.||.|||||||||||||||||||||||.|||||||||||.||||
RBAM_036840__ 438 GGCCGCAGACCTTGACCGCTCCGGCTATAACGCCGCAAAAGGCGGAATCA 487
BSNT_06118 299 CCAACCTGACAAAGGCAATGGCAATCGACTACGCACGGAA-CGGCATCCG 347
|.||||||||.|..||.|||||.||.||.||||| |.||| |||.|||||
RBAM_036840__ 488 CGAACCTGACGAGAGCGATGGCCATTGATTACGC-CAGAAGCGGAATCCG 536
BSNT_06118 348 CGTCAATTCCATTTCACCAGGTACGATCGAAACCCCGCTGATTGACAAAT 397
||||||||||.|.||.||.||.|||||.|||||.|||||.|||||.||||
RBAM_036840__ 537 CGTCAATTCCTTATCGCCGGGGACGATTGAAACGCCGCTCATTGATAAAT 586
BSNT_06118 398 TAGCAGGCACCAAAGAACAGGAAATGGGCGAAGCATTCCGCGAAGCCAAC 447
|.||||||||.|.||||.|.||||||||||||||.|||||.|||||||||
RBAM_036840__ 587 TGGCAGGCACGACAGAAGACGAAATGGGCGAAGCGTTCCGTGAAGCCAAC 636
BSNT_06118 448 AAATGGGTCACGCCGCTCGGCCGCCTTGGCCAGCCGAAGGAAATGGCGAC 497
||||||.||||||||||||||||.||.||..|.|||.|.||||||||..|
RBAM_036840__ 637 AAATGGATCACGCCGCTCGGCCGGCTCGGAAAACCGGAAGAAATGGCAGC 686
BSNT_06118 498 AGTAGCGCTGTTCCTCGCGTCAGACGACAGCTCATACGTCACAGGAGAGG 547
.||.|||||.||||||||.||||||||||||||.||||||||.|||||.|
RBAM_036840__ 687 CGTCGCGCTCTTCCTCGCTTCAGACGACAGCTCTTACGTCACGGGAGAAG 736
BSNT_06118 548 ACATCACCGCAGACGGCGGCATCATGGCATATACATGGCCTGGGAAGATG 597
|||||||||||||||||||||||||||||||.||.|||||.|||||.|||
RBAM_036840__ 737 ACATCACCGCAGACGGCGGCATCATGGCATACACTTGGCCAGGGAAAATG 786
BSNT_06118 598 CTGATTGATGAGAAATGGAAGGAAGAAACGAAATAA 633
|||||||||.||||.|||||||||||.|||.|.|.|
RBAM_036840__ 787 CTGATTGATAAGAAGTGGAAGGAAGAGACGGAGTGA 822
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