Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06103 and RBAM_036790

See Amino acid alignment / Visit BSNT_06103 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:35
# Commandline: needle
#    -asequence dna-align/BSNT_06103___iolR.1.9828.seq
#    -bsequence dna-align/RBAM_036790___iolR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06103___iolR-RBAM_036790___iolR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06103___iolR-RBAM_036790___iolR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06103___iolR
# 2: RBAM_036790___iolR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity:     578/760 (76.1%)
# Similarity:   578/760 (76.1%)
# Gaps:           8/760 ( 1.1%)
# Score: 2152.0
# 
#
#=======================================

BSNT_06103___      1 ATGAAACTGATGCGGATTCAGGAAATGGAGGAGTACATTTTATCGCATGG     50
                     |||||||||||||||||||||||.|||||.||.||||||.|....||.||
RBAM_036790__      1 ATGAAACTGATGCGGATTCAGGAGATGGAAGAATACATTCTCAAACACGG     50

BSNT_06103___     51 ---CACTGTTTCCTTAGATGAGCTGTGCCAGGTGTTCAATGTCTCCAAAA     97
                        |||   |||..|.||||||||||||.||||.|||||.|||||.||||
RBAM_036790__     51 AGCCAC---TTCACTGGATGAGCTGTGCGAGGTATTCAACGTCTCTAAAA     97

BSNT_06103___     98 ACACAGTCAGACGTGATATCAACAAGCTAACAGAAAAGGGTGCGATTGAA    147
                     ||||.||||||||.|||||.||.|||||..|.|||||.||.|..||..||
RBAM_036790__     98 ACACGGTCAGACGCGATATTAATAAGCTTGCGGAAAAAGGGGTTATCAAA    147

BSNT_06103___    148 AAAGTATACGGCGGCGTAACATCTATTGAAAAAACCGCATTAGTTCCTTT    197
                     ||.||||||||||||||.||.||....||||||.|.|...|.||.|||||
RBAM_036790__    148 AAGGTATACGGCGGCGTGACGTCAGCCGAAAAATCTGTGCTCGTCCCTTT    197

BSNT_06103___    198 TGAAAATCGCACCATTCAGCACCAGGATGAAAAAACAAAAATCGCCCATT    247
                     ||||||.|||||||||||.||.|||||||||||||..||||||||||..|
RBAM_036790__    198 TGAAAACCGCACCATTCAACATCAGGATGAAAAAATCAAAATCGCCCGCT    247

BSNT_06103___    248 ATGCTTCCCGATTTATTGAAGATCACGATTTGGTCTTCATTGATTCAGGA    297
                     ||||.||.||.|||||.||.|||||||||.|.||.||.||||||||.||.
RBAM_036790__    248 ATGCGTCACGGTTTATCGAGGATCACGATCTTGTATTTATTGATTCCGGC    297

BSNT_06103___    298 ACGACGACAAAGTCTATTCTTGATACGCTTGATCCAGCCAAAAATGTCAC    347
                     ||||||||.||.||.||.||.||.|||||||||||.|..||.|||||.||
RBAM_036790__    298 ACGACGACCAAATCGATGCTGGAGACGCTTGATCCCGATAAGAATGTAAC    347

BSNT_06103___    348 CATCTTAACCAACAGTTTAGACATTATCAATGCGGCGTCAGCATTGAAGA    397
                     ..|.||.||.|||||..|.||.|||||.||.|||||.|||.|..||||.|
RBAM_036790__    348 GGTTTTGACGAACAGCCTTGATATTATTAACGCGGCTTCATCCATGAAAA    397

BSNT_06103___    398 ATATCAACTTAATCATTATCGGAAACAACTATAAGAGAAAAACCCGCTCC    447
                     |||||.||.|.|||||.|||||.||.|||||.||..|.||.||..|.||.
RBAM_036790__    398 ATATCGACCTGATCATCATCGGCAATAACTACAAACGGAAGACAAGGTCG    447

BSNT_06103___    448 TTTGTCGGCATGGACGACCCG-GCTATGCTTGATAAGTACAATATCAACA    496
                     |||||||||||.||.||.||| || |..||..||||.|||||.||.||||
RBAM_036790__    448 TTTGTCGGCATTGATGATCCGAGC-ACACTCAATAAATACAACATTAACA    496

BSNT_06103___    497 AAGCCTTTATGTCCGCTACCGGAACGACGCTGACACACGGATTGACCAAT    546
                     |.||.||.||||||||||||||.||.|||.|.||.|||||..||||.|||
RBAM_036790__    497 AGGCGTTCATGTCCGCTACCGGGACAACGATCACCCACGGCCTGACGAAT    546

BSNT_06103___    547 TCGGATCTGCTGGAGTATGAAATTAAAAAGAGGATTTCAGAAAAAGCAAA    596
                     ||.||..|.|||||.||.||..|.||||||||.|||||.|||||.||.||
RBAM_036790__    547 TCCGACTTACTGGAATACGAGGTGAAAAAGAGAATTTCCGAAAAGGCGAA    596

BSNT_06103___    597 AGAAGTGTATCTATTGGCTGACCATTCTAAATTCGGAAAATCAACGCTTC    646
                     .|||||||||||..|.||.||.|||||.||||||||.|||||.||||||.
RBAM_036790__    597 CGAAGTGTATCTGCTCGCGGATCATTCCAAATTCGGCAAATCCACGCTTT    646

BSNT_06103___    647 TGACGTATGCGCCGTTTGACAGGCTGCATTGCATTGTGACCTCTCAGCCA    696
                     ||||.||.|||||.||.|||.||||.||..|||||||.||.|||||||..
RBAM_036790__    647 TGACATACGCGCCTTTCGACCGGCTTCACAGCATTGTCACTTCTCAGCAG    696

BSNT_06103___    697 TTAGACGACGAGTACACGCAGTACTGCAATGAGCATCAAATCGGCATTCA    746
                     .|.||.||.||.||.|||.||||.|||.|.|||||||||||||.||||||
RBAM_036790__    697 CTCGATGAGGAATATACGAAGTATTGCCAAGAGCATCAAATCGACATTCA    746

BSNT_06103___    747 TCTGGCCTAA    756
                     ..||||.||.
RBAM_036790__    747 CTTGGCATAG    756


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06103 and RBAM_036790

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
