Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06089 and RBAM_036700

See Amino acid alignment / Visit BSNT_06089 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:34
# Commandline: needle
#    -asequence dna-align/BSNT_06089___iolI.1.9828.seq
#    -bsequence dna-align/RBAM_036700___iolI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06089___iolI-RBAM_036700___iolI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06089___iolI-RBAM_036700___iolI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06089___iolI
# 2: RBAM_036700___iolI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity:     709/847 (83.7%)
# Similarity:   709/847 (83.7%)
# Gaps:          14/847 ( 1.7%)
# Score: 3028.0
# 
#
#=======================================

BSNT_06089___      1 ATGAAACTTTGTTTTAATGAAGCGACAACATTGGAAAACTCAAACCTTAA     50
                     |||||||||||.||||||||||||||.||..||||.||.||||||.|.||
RBAM_036700__      1 ATGAAACTTTGCTTTAATGAAGCGACTACGCTGGAGAATTCAAACTTGAA     50

BSNT_06089___     51 ACAGGATTTAGAATTATGCGAAAAGCACGGCTATGATTATATTGAAATCC    100
                     ||||||||||||..|.||||||||||||||||||||||||||||||||||
RBAM_036700__     51 ACAGGATTTAGAGCTGTGCGAAAAGCACGGCTATGATTATATTGAAATCC    100

BSNT_06089___    101 GCACAATGGATAAGCTGCCGGAGTACTTAAAAGATCATTCATTGGCAGAT    150
                     ||||||||||||||||||||||.|||||||||||.||||||.||||.|||
RBAM_036700__    101 GCACAATGGATAAGCTGCCGGAATACTTAAAAGACCATTCACTGGCCGAT    150

BSNT_06089___    151 CTTGCGGAATATTTTCAAACCCATCACATCAAACCGCTTGCCTTAAACGC    200
                     ||.|||||||||||||.||||||||||||.||||||||||||.|.|||||
RBAM_036700__    151 CTGGCGGAATATTTTCGAACCCATCACATTAAACCGCTTGCCCTGAACGC    200

BSNT_06089___    201 ACTCGTTTTCTTCAACAACCGTGATGAAAAGGGCCACAACGAGATCATCA    250
                     |||.|||||||||||||||||||||||.||||||.|.|..||||||||..
RBAM_036700__    201 ACTGGTTTTCTTCAACAACCGTGATGAGAAGGGCTATAGGGAGATCATTT    250

BSNT_06089___    251 CTGAATTTAAAGGCATGATGGAAACATGCAAAACCCTCGGTGTGAAATAT    300
                     |.|||||.|||.|||||||||||||.||||.|||||||||.||||||||.
RBAM_036700__    251 CGGAATTCAAAAGCATGATGGAAACCTGCAGAACCCTCGGCGTGAAATAC    300

BSNT_06089___    301 GTGGTGGCCGTTCCGCTTGTGACAGAGCAGAAGATTATAAAAGAAGAGAT    350
                     ||.||||||||.|||||.||||||||||.|||.||..|.|||||||||||
RBAM_036700__    301 GTAGTGGCCGTGCCGCTAGTGACAGAGCGGAAAATCTTGAAAGAAGAGAT    350

BSNT_06089___    351 CAAAAAGAGCAGTGTAGACGTGCTGACTGAGCTGTCAGATATCGCGGAGC    400
                     ||||||||||||.|.|||.||||||||||||||.||.||.||||||||||
RBAM_036700__    351 CAAAAAGAGCAGCGCAGAGGTGCTGACTGAGCTTTCGGACATCGCGGAGC    400

BSNT_06089___    401 CGTACGGCGTAAAAATAGCGCTTGAATTTGTCGGCCATCCGCAATGTACG    450
                     |||||||||||||.||.||.|||||||||||||||||.||||||||||||
RBAM_036700__    401 CGTACGGCGTAAACATTGCCCTTGAATTTGTCGGCCACCCGCAATGTACG    450

BSNT_06089___    451 GTCAATACGTTTGAACAGGCGTATGAGATCGTAAACACAGTTAACCGTGA    500
                     ||||||||.|||||||||||||||||.|||||.|||.|.||...|||.||
RBAM_036700__    451 GTCAATACATTTGAACAGGCGTATGACATCGTGAACGCTGTCGGCCGCGA    500

BSNT_06089___    501 CAATGTCGGGCTTGTCCTTGACAGTTTTCACTTCCATGCAATGGGTTCAA    550
                     .||||||||.||.||..|||||||.||.||.|||||.||.|||||.||.|
RBAM_036700__    501 TAATGTCGGACTGGTGTTTGACAGCTTCCATTTCCACGCGATGGGCTCCA    550

BSNT_06089___    551 ATATTGAGAGCTTAAAGCAGGCGGACGGAAAGAAAATCTTCATCTATCAT    600
                     ||||||||||.||.|||||||||||||||||||||||.||||||||||||
RBAM_036700__    551 ATATTGAGAGTTTGAAGCAGGCGGACGGAAAGAAAATTTTCATCTATCAT    600

BSNT_06089___    601 ATTGATGATACAGAAGATTTCCCAATCGGCTTTTTAACAGATGAGGATCG    650
                     ||.||.|||||||||||.||.||.||||||||||||||.|||||.||.||
RBAM_036700__    601 ATCGACGATACAGAAGACTTTCCGATCGGCTTTTTAACGGATGAAGACCG    650

BSNT_06089___    651 TGTATGGCCGGGACAAGGGGCAATTGACTTAGATGCCCACTTATCAGCAC    700
                     .||.|||||.||.||.||.||.|||||||||||.|||||..|.|||||..
RBAM_036700__    651 CGTCTGGCCTGGGCAGGGTGCGATTGACTTAGACGCCCATCTGTCAGCGT    700

BSNT_06089___    701 TGAAGGAAATCGGCTTCTCTGATGTTGTTTCGGTTGAGCTCTTCCGGCCT    750
                     |.||.||||||||.|||..|||||||||.||.||.|||||.|||.|.|||
RBAM_036700__    701 TAAAAGAAATCGGATTCAATGATGTTGTCTCCGTAGAGCTGTTCAGACCT    750

BSNT_06089___    751 GAATACTATAAGCTGACTGCTGAGGAAGCCATTCAAACAGCGAAAAAAAC    800
                     |||||.||||||||||||||.||||||.|.||..||||.||.||..||||
RBAM_036700__    751 GAATATTATAAGCTGACTGCGGAGGAAACGATCAAAACGGCAAAGGAAAC    800

BSNT_06089___    801 AACAGTGGATGTCGTATCAAAATACTTCAGCATGTAA----------    837
                     |||.|..|..|||||||||||||||||   |||| ||          
RBAM_036700__    801 AACGGAAGCCGTCGTATCAAAATACTT---CATG-AAGGAGGCGTGA    843


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