Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06073 and RBAM_036550
See
Amino acid alignment /
Visit
BSNT_06073 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:33
# Commandline: needle
# -asequence dna-align/BSNT_06073___yxeC.1.9828.seq
# -bsequence dna-align/RBAM_036550___yxeC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06073___yxeC-RBAM_036550___yxeC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06073___yxeC-RBAM_036550___yxeC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06073___yxeC
# 2: RBAM_036550___yxeC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 417
# Identity: 176/417 (42.2%)
# Similarity: 176/417 (42.2%)
# Gaps: 174/417 (41.7%)
# Score: 448.0
#
#
#=======================================
BSNT_06073___ 1 ATGGGAATTACAAAAAGAGGTGCCGCTTGGGAATGGCTGCATAGCTGGTG 50
RBAM_036550__ 0 -------------------------------------------------- 0
BSNT_06073___ 51 GATGCTGTTTATTTTCATGCCTTTTGCCATTACCAGTTTTTTTGCCTTTT 100
RBAM_036550__ 0 -------------------------------------------------- 0
BSNT_06073___ 101 TATTTATTGGCATCAAGGTTAGAAATAGAAAGTGGATCATGTACGGCATC 150
.|||.|.|..|||||..|.
RBAM_036550__ 1 -------------------------------ATGGCTGAAATACGGACTT 19
BSNT_06073___ 151 ATTTATTTTTTCATTTTTGCGTTTGGTTTTGTTTTGTCCGATC-TGCCCG 199
| |||||||.|.|||||.||..|||.||||||..|| ||||.| .|||.|
RBAM_036550__ 20 A-TTATTTTATTATTTTAGCAATTGCTTTTGTGCTG-CCGAGCACGCCGG 67
BSNT_06073___ 200 GTGTTTTTATTGTGGTCCCGTTATGGGCGGTAACCATTATTCATGGATTT 249
|.||.|.|||.|||.|.||.|||||||...|..||||.|||||.||..|.
RBAM_036550__ 68 GCGTGTATATCGTGCTGCCTTTATGGGTCATCTCCATCATTCACGGGCTG 117
BSNT_06073___ 250 AAAGTGC-GCCCGCTGTATTTGATTCAGCTGGATGTCT----ACAAAGAT 294
||||||| |.|.||| ||||||||.|||||.|||||.| |||||
RBAM_036550__ 118 AAAGTGCGGGCGGCT-TATTTGATACAGCTTGATGTGTTTAAACAAA--- 163
BSNT_06073___ 295 CATGTGGAGGCGCGGGCTTTTGCCGAGGCAAGAAGTGAAGCCGAGAGCAG 344
|.||.||.||..|.||.|.||..|.||.|||...|||.||.|| ||||.
RBAM_036550__ 164 -ACGTCGAAGCAAGAGCGTATGAAGCGGTAAGGCATGAGGCTGA-AGCAA 211
BSNT_06073___ 345 ATTTCATGCACCG--AAACAGTCT------ATTCAGGATAT-ACATATTC 385
| ||.|..|| ||||...|| ||| |||.| ||
RBAM_036550__ 212 A----ATTCGGCGGAAAACCCGCTCATCGCATT---GATCTGAC------ 248
BSNT_06073___ 386 GCAAAGAACAG---TAA 399
|.||||| |||
RBAM_036550__ 249 ----AAAACAGAGATAA 261
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.