Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06068 and RBAM_036520

See Amino acid alignment / Visit BSNT_06068 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:33
# Commandline: needle
#    -asequence dna-align/BSNT_06068___yxeF.1.9828.seq
#    -bsequence dna-align/RBAM_036520___yxeF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06068___yxeF-RBAM_036520___yxeF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06068___yxeF-RBAM_036520___yxeF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06068___yxeF
# 2: RBAM_036520___yxeF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 469
# Identity:     299/469 (63.8%)
# Similarity:   299/469 (63.8%)
# Gaps:          86/469 (18.3%)
# Score: 965.0
# 
#
#=======================================

BSNT_06068___      1 ATGGTGATCCCCTTGAGAAACAAATATGGCATTTT----------GTTTT     40
                                 |||.|.|||  |||.|| |||||          |||.|
RBAM_036520__      1 ------------TTGCGGAAC--ATACGG-ATTTTCATCATGACGGTTCT     35

BSNT_06068___     41 TAATTGCTGTATGCATCATGGTATCGGGCTGCCAGCAGCAAAAAGAA--G     88
                     |..||.| |.||||.|||||.||.|.||||||..||    |||||||  .
RBAM_036520__     36 TGTTTTC-GGATGCGTCATGATAACAGGCTGCTCGC----AAAAGAAAGC     80

BSNT_06068___     89 AGACG-----CCGTTTTATTACGGAACGTGGGATGAGGGGCGTGCCCCCG    133
                     |||||     ||.|||||||||||.||.|||||||.||||| ||...|||
RBAM_036520__     81 AGACGAACCCCCTTTTTATTACGGGACATGGGATGCGGGGC-TGAAACCG    129

BSNT_06068___    134 GG-CCAACGGACGGTGTGAAATCAGCAACAGTCACATTTACCGAAGACGA    182
                     || ||.|.||||||.||.|.|||.|.|||.|||||.|||||..||||| |
RBAM_036520__    130 GGCCCGATGGACGGGGTCAGATCTGAAACCGTCACGTTTACGAAAGAC-A    178

BSNT_06068___    183 G-GTTGTGGAAACGGAAGTGGTGGAAGGAAGAGGAGAGGTACAGCTGCCT    231
                     | ||..||..||.|.|.||..|..||||..|.||.|||||     |||| 
RBAM_036520__    179 GCGTGCTGACAAAGCAGGTCATTCAAGGCCGCGGCGAGGT-----TGCC-    222

BSNT_06068___    232 TTTATG---------GCATACAAGGTGATTTCCCAAAGCACTGACGGGTC    272
                        |||         |..|||||||||||.||.||||.|||.||||||.|
RBAM_036520__    223 ---ATGCCCTCAGATGTGTACAAGGTGATCTCACAAAACACGGACGGGAC    269

BSNT_06068___    273 TATCGAGATTCAGTACCTCGGCCCTTATTATCCGC------TCAAAAGCA    316
                     .|||||||||.|.||||||||.|      ||||||      |||||||||
RBAM_036520__    270 GATCGAGATTGAATACCTCGGAC------ATCCGCACCCCGTCAAAAGCA    313

BSNT_06068___    317 CGCTGAAAAGAGGAGAAAACGGGACATTGATATGGGAGCAAAATGGACAG    366
                     ||.|||||||||||.||||||..||..|.||.|||.||..|.|.|||.|.
RBAM_036520__    314 CGTTGAAAAGAGGAAAAAACGATACGCTCATTTGGAAGATATACGGAGAA    363

BSNT_06068___    367 AGAAAAACGATGACAAGAATCGAATCAAAGACCGGCAGGGAGGAGAAAGA    416
                     |.|||.||.|||||||||||      |||.||||||.|||||||...|.|
RBAM_036520__    364 ACAAAGACAATGACAAGAAT------AAAAACCGGCGGGGAGGATGCACA    407

BSNT_06068___    417 TGAGAAATCAAAAAGCTGA    435
                     ||||||||.|         
RBAM_036520__    408 TGAGAAATAA---------    417


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