Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06065 and RBAM_036500

See Amino acid alignment / Visit BSNT_06065 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:33
# Commandline: needle
#    -asequence dna-align/BSNT_06065___yxeH.1.9828.seq
#    -bsequence dna-align/RBAM_036500___yxeH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06065___yxeH-RBAM_036500___yxeH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06065___yxeH-RBAM_036500___yxeH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06065___yxeH
# 2: RBAM_036500___yxeH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity:     615/836 (73.6%)
# Similarity:   615/836 (73.6%)
# Gaps:          46/836 ( 5.5%)
# Score: 2230.5
# 
#
#=======================================

BSNT_06065___      1 ATGTACAAACTAATTGCAATTGATATGGATGGAACACTTTTAAATGATCA     50
                     ||||||||..||||.|||||.||||||||.||.|||||.|||||.|||||
RBAM_036500__      1 ATGTACAAGTTAATCGCAATAGATATGGACGGCACACTATTAAACGATCA     50

BSNT_06065___     51 TCATGAAGTAACAGAGGAGGTCCGCGACGCCCTTCACGCGGCAAAAGCGG    100
                     |||||||||.||.|..||.|||||||..||.|||.|.||.||.|||||||
RBAM_036500__     51 TCATGAAGTGACGGCTGAAGTCCGCGGGGCGCTTGATGCCGCCAAAGCGG    100

BSNT_06065___    101 AAGGTGTCAAAATTGTGCTTTGCACCGGCCGGCCTATCGGGGGTGTGCAG    150
                     ||||.|||||.||.||.||.|||||.||||||||.|||||.||.||||..
RBAM_036500__    101 AAGGGGTCAATATCGTCCTGTGCACGGGCCGGCCGATCGGCGGCGTGCGT    150

BSNT_06065___    151 AGATATTTAGATGAACTGAATTTAATTGAAGAAGGCGACTATGTTATTGC    200
                     .|.|||||.||.||.|||||.|||...||.||||||||||.|||.|||||
RBAM_036500__    151 CGGTATTTGGAAGAGCTGAACTTACAGGAGGAAGGCGACTTTGTGATTGC    200

BSNT_06065___    201 GTATAATGGAGCGCTTGTTCAAAATACGCATACAAATGAAGTGGTCTCAG    250
                     .|||||.||.||.||.||.|||||||||.|||||||.|..||.||..|.|
RBAM_036500__    201 CTATAACGGCGCACTCGTCCAAAATACGTATACAAACGGTGTCGTGGCCG    250

BSNT_06065___    251 AGCTGTCTCTCGGTTATGATGATTTGACTTCATTATATGACCTGAGCTTA    300
                     |||.|||..|.||.|.|||.|||||||..||..|.||.||.|||||||||
RBAM_036500__    251 AGCAGTCATTAGGCTTTGAAGATTTGAAGTCGCTTTACGAGCTGAGCTTA    300

BSNT_06065___    301 GAGCTGAAGACGCCGATGCATTTCTTTGACTCATCTAATTTGTATACGCC    350
                     .|||||.|.||.||||||||||.|||||||.||.|.|||.||||.|||||
RBAM_036500__    301 CAGCTGGATACTCCGATGCATTACTTTGACACAGCCAATCTGTACACGCC    350

BSNT_06065___    351 TAACCGGGACATTAGCGAATTTACCGTATACGAATCCTATGTGACACAGG    400
                     .||||||||.||.||.||||..||.|||||||||||.||..|.||..|.|
RBAM_036500__    351 GAACCGGGATATCAGTGAATACACGGTATACGAATCATACATTACGAAAG    400

BSNT_06065___    401 TGCCGCTTCATTTCCGCAAAATTGACGAGGTGCCAAAAGATATCCTCATC    450
                     ||||||||||||||||||..||.||.||.|||||.||.|||||.||.||.
RBAM_036500__    401 TGCCGCTTCATTTCCGCACGATCGATGAAGTGCCGAAGGATATTCTGATT    450

BSNT_06065___    451 CCGAAAGTGATGTTTATTGATAAACCGGAGAACTT-----AAGC---CGC    492
                     ||||||||.|||||.|||||..|.|||||.||..|     ||||   |||
RBAM_036500__    451 CCGAAAGTCATGTTCATTGACGATCCGGACAAGCTGGAGAAAGCGATCGC    500

BSNT_06065___    493 GT-CATTAC---ATCGATTCCGAAAGACGTGAGAGAAAAATATACAATGG    538
                     .| ||||.|   ||| ||||   |||        ||||.|||.|||||||
RBAM_036500__    501 TTCCATTCCGGAATC-ATTC---AAG--------GAAACATACACAATGG    538

BSNT_06065___    539 TCAGAAGCGCGCCTTTCTTTTATGAAATTCTGCACTCGGAAGCCAGCAAA    588
                     |||.|||||||||.|||||..||||.|||||.|||.||.|||.|||.|||
RBAM_036500__    539 TCAAAAGCGCGCCATTCTTCCATGAGATTCTTCACCCGAAAGTCAGTAAA    588

BSNT_06065___    589 GGAAATGCTGTACGCCAGCTGGCTCAGCTC------CTTGGAATTGAACA    632
                     |||||.||.||   |.|||||   |.|.||      ||.||.||||||||
RBAM_036500__    589 GGAAACGCGGT---CAAGCTG---CTGGTCGAAAAACTCGGCATTGAACA    632

BSNT_06065___    633 GACGGAAGTCATGTGC-ATAGGCGACAACGGGAACGACCTGACAATGATC    681
                     ||..||.|||||| || ||.|||||.|||||.||||||.||.|.|||||.
RBAM_036500__    633 GAAAGACGTCATG-GCAATCGGCGATAACGGCAACGACATGTCCATGATT    681

BSNT_06065___    682 GAATGGGCGGGCTGCGGGGTTGCCATGGCAAACGCCATCCCAGAAGTATT    731
                     .|.|||||.||||||||.||.||.|||||.||.||||||||.||||||..
RBAM_036500__    682 CAGTGGGCCGGCTGCGGTGTGGCAATGGCCAATGCCATCCCGGAAGTAAG    731

BSNT_06065___    732 GGAAGCAGCAAACTTTCAAACACGCTCCAATAATGAACATGGTGTTGCGC    781
                     |||....||..|.|||.||||....||.|||||.|||||.||.||.||||
RBAM_036500__    732 GGAGATTGCTGATTTTGAAACGAAATCAAATAACGAACACGGCGTGGCGC    781

BSNT_06065___    782 ATGCGATTCACGAGCTTGTTTTGGCTAAATAA----    813
                     ||||||||||.||||||||    |||.||.||    
RBAM_036500__    782 ATGCGATTCAGGAGCTTGT----GCTGAAAAAATAG    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06065 and RBAM_036500

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
