Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06043 and RBAM_036460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:32
# Commandline: needle
# -asequence dna-align/BSNT_06043___pdp.1.9828.seq
# -bsequence dna-align/RBAM_036460___pdp.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06043___pdp-RBAM_036460___pdp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06043___pdp-RBAM_036460___pdp.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06043___pdp
# 2: RBAM_036460___pdp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1306
# Identity: 1086/1306 (83.2%)
# Similarity: 1086/1306 (83.2%)
# Gaps: 8/1306 ( 0.6%)
# Score: 4511.5
#
#
#=======================================
BSNT_06043___ 1 ATGAGAATGGTAGATATCATCATCAAAAAACAAAACGGAAAAGAACTCAC 50
|||||||||||||||.|.||..|.|||||||||||.|||||||||||.||
RBAM_036460__ 1 ATGAGAATGGTAGATCTTATTGTAAAAAAACAAAATGGAAAAGAACTGAC 50
BSNT_06043___ 51 CACTGAAGAAATTCAATTTTTCGTGAACGGCTACACAGACGGAAGCATTC 100
.||.||||||||||||||||||||.||.||.|||||.|||||||||||.|
RBAM_036460__ 51 AACAGAAGAAATTCAATTTTTCGTAAAAGGATACACGGACGGAAGCATCC 100
BSNT_06043___ 101 CTGATTATCAGGCAAGCGCGCTTGCTATGGCGATTTTCTTCCAGGATATG 150
|||||||||||||||||||.||.|||||||||||||.|||.|||||||||
RBAM_036460__ 101 CTGATTATCAGGCAAGCGCACTGGCTATGGCGATTTACTTTCAGGATATG 150
BSNT_06043___ 151 AGTGACCGTGAACGCGCGGACTTGACGATGGCTATGGTGAACTCCGGTGA 200
|..||.|..||.|||||.||..||||.|||||.||||||||.||.||.||
RBAM_036460__ 151 ACAGATCAGGAGCGCGCCGATCTGACAATGGCGATGGTGAATTCAGGGGA 200
BSNT_06043___ 201 AACGATTGATCTTTCTGCCATTGAAGGAATTAAAGTGGATAAACACTCCA 250
||||||||||||.||.|||||||||||.||||||||.||.||.|||||.|
RBAM_036460__ 201 AACGATTGATCTCTCCGCCATTGAAGGCATTAAAGTCGACAAGCACTCTA 250
BSNT_06043___ 251 CCGGCGGCGTCGGCGACACGACAACGCTCGTTCTCGCCCCGCTTGTTGCG 300
|.|||||.|||||||||||||||||.|||||.|||||.|||||.||.|||
RBAM_036460__ 251 CGGGCGGGGTCGGCGACACGACAACTCTCGTACTCGCACCGCTCGTCGCG 300
BSNT_06043___ 301 GCTCTTGATGTGCCGGTTGCCAAAATGTCCGGCCGCGGCCTCGGCCATAC 350
||.||.|..||.||.|||||.|||||||||||||||||.|||||||||||
RBAM_036460__ 301 GCGCTCGGGGTTCCCGTTGCTAAAATGTCCGGCCGCGGTCTCGGCCATAC 350
BSNT_06043___ 351 GGGCGGCACGATTGATAAGTTAGAGGCAATCGACGGCTTCCACGTGGAAC 400
|||.||.||.|||||||||.|.||.||.|||||.|||||.|||||||||.
RBAM_036460__ 351 GGGGGGAACCATTGATAAGCTGGAAGCGATCGAAGGCTTTCACGTGGAAT 400
BSNT_06043___ 401 TGACGAAGGATGAATTTATTAAACTTGTGAACCGCGACAAGGTTGCGGTC 450
|..|.||.||||||||.||.||.|||||||||||||||||.||.||.|||
RBAM_036460__ 401 TATCAAAAGATGAATTCATCAAGCTTGTGAACCGCGACAAAGTAGCCGTC 450
BSNT_06043___ 451 ATCGGCCAAAGCGGCAATTTAACGCCGGCTGATAAAAAACTGTACGCGCT 500
|||||.||||||||||||||.|||||.||.||||||||.|||||.|||||
RBAM_036460__ 451 ATCGGACAAAGCGGCAATTTGACGCCTGCCGATAAAAAGCTGTATGCGCT 500
BSNT_06043___ 501 TCGTGATGTAACGGGAACGGTCAATTCCATTCCGCTCATTGCAAGCTCGA 550
.||||||||||||||.|||||.||.|||||.|||||.||.||||||||.|
RBAM_036460__ 501 GCGTGATGTAACGGGTACGGTGAACTCCATCCCGCTGATCGCAAGCTCAA 550
BSNT_06043___ 551 TTATGAGCAAAAAAATCGCTGCCGGGGCGGACGCCATCGTGCTTGACGTA 600
|||||||.|||||||||||.|||||.||.||.|||||||||||||||||.
RBAM_036460__ 551 TTATGAGTAAAAAAATCGCCGCCGGAGCAGATGCCATCGTGCTTGACGTC 600
BSNT_06043___ 601 AAAACGGGAGCGGGCGCCTTCATGAAAACAGAAGAAGACGCAGCTGAA-C 649
|||||||||||.|||||.||.||||||||.||.||||||||.| |||| |
RBAM_036460__ 601 AAAACGGGAGCCGGCGCGTTTATGAAAACGGATGAAGACGCCG-TGAACC 649
BSNT_06043___ 650 TTGCCAAAGCGATGGTACGCATCGGAAATAACGTCGGCCGTCAAACAATG 699
|.||||||||.|||||.|||||||||||.|||||||||||.||.||.|||
RBAM_036460__ 650 TCGCCAAAGCAATGGTGCGCATCGGAAACAACGTCGGCCGCCAGACGATG 699
BSNT_06043___ 700 GCTGTCATTTCAGACATGTCCCAGCCGCTCGGCTTTGCGATCGGAAATGC 749
||.||.|||||.||.|||||.|||||||||||.|||||||||||.|||||
RBAM_036460__ 700 GCCGTGATTTCTGATATGTCGCAGCCGCTCGGTTTTGCGATCGGGAATGC 749
BSNT_06043___ 750 GCTTGAAGTCAAAGAAGCGATCGACACACTCAAAGGCGAGGGACCTGAGG 799
.||.|||||..|||||||.||.||.|||.|.|.|||.||.||.|||||.|
RBAM_036460__ 750 CCTGGAAGTACAAGAAGCCATTGATACATTAAGAGGGGAAGGGCCTGAAG 799
BSNT_06043___ 800 ATCTT-CATGAACTTGTCTTAACGCTCGGCAGCCAGATGGTTGTGCTTGC 848
| ||| .|.|||||.|||.|.||||||||||||||.|||||.||..|.||
RBAM_036460__ 800 A-CTTAAACGAACTCGTCCTCACGCTCGGCAGCCAAATGGTCGTATTGGC 848
BSNT_06043___ 849 GAAAAAAGCCGATACATTGGACGAAGCGAGAGCGAAGCTGGAAGAAGTCA 898
|||||||||.||.||||||||.|||||||||..|||||||.|.|||||||
RBAM_036460__ 849 GAAAAAAGCTGAGACATTGGAAGAAGCGAGAATGAAGCTGCAGGAAGTCA 898
BSNT_06043___ 899 TGAAAAACGGCAAGGCACTTGAGAAATTCAAGGATTTCCTGAAAAACCAA 948
|||||||||||||.||.|||||.||.|||||.||.||.||||..||.||.
RBAM_036460__ 899 TGAAAAACGGCAAAGCGCTTGAAAAGTTCAAAGAGTTTCTGAGCAATCAG 948
BSNT_06043___ 949 GGCGGCGACAGCT--CGATTGTTGACGATCCGTCTAAGCTTCCGCAAGCC 996
||.||.||| ||| || |.||||||||||||||.||.||||||||.||.
RBAM_036460__ 949 GGAGGAGAC-GCTTCCG-TCGTTGACGATCCGTCCAAACTTCCGCAGGCG 996
BSNT_06043___ 997 GCATATCAAATTGATGTGCCTGCCAAAGAAGCGGGTGTCGTCTCTGAAAT 1046
||.||..|||||||.||.||.||.|||||||||||||||||.||.|||||
RBAM_036460__ 997 GCGTACAAAATTGACGTTCCGGCGAAAGAAGCGGGTGTCGTTTCAGAAAT 1046
BSNT_06043___ 1047 CGTTGCGGATGAAATCGGTGTCGCGGCGATGCTGTTAGGTGCCGGCCGCG 1096
|||.||.||.||||||||.|||||.||||||||||||||.||.||.||.|
RBAM_036460__ 1047 CGTCGCCGACGAAATCGGCGTCGCAGCGATGCTGTTAGGCGCGGGACGTG 1096
BSNT_06043___ 1097 CCACAAAAGAAGATGAGATCGATTTAGCCGTCGGCATCATGCTCCGCAAA 1146
|.||||||||.||.||.||||||.|.|||||||||||.|||||.||||||
RBAM_036460__ 1097 CGACAAAAGAGGACGAAATCGATCTTGCCGTCGGCATTATGCTTCGCAAA 1146
BSNT_06043___ 1147 AAGGTCGGCGACAAAGTAGAAAAAGGCGAACCGCTCGTGACGCTTTACGC 1196
||.|||||.|||||.||.|||||||||||.||||||||.||.||||||||
RBAM_036460__ 1147 AAAGTCGGTGACAACGTCGAAAAAGGCGAGCCGCTCGTCACCCTTTACGC 1196
BSNT_06043___ 1197 CAACCGCGAAAACGTTGATGAAGTCATCGCAAAAGTCTATGACAACATCC 1246
||||||||||||||||||.||.||.|.|||.|||||||||||||||||||
RBAM_036460__ 1197 CAACCGCGAAAACGTTGAAGACGTGACCGCCAAAGTCTATGACAACATCC 1246
BSNT_06043___ 1247 GCATCGCCGCGGAAGCGAAGGCGCCGAAGCTGATTCATACGTTAATTACA 1296
|||||.|.|...|||||.|.||||||||.||||||||||||.|.|||||.
RBAM_036460__ 1247 GCATCTCAGAAAAAGCGGAAGCGCCGAAACTGATTCATACGCTGATTACG 1296
BSNT_06043___ 1297 GAATAA 1302
||||||
RBAM_036460__ 1297 GAATAA 1302
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