Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06035 and RBAM_036380

See Amino acid alignment / Visit BSNT_06035 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:31
# Commandline: needle
#    -asequence dna-align/BSNT_06035.1.9828.seq
#    -bsequence dna-align/RBAM_036380.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06035-RBAM_036380.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06035-RBAM_036380.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06035
# 2: RBAM_036380
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 398
# Identity:     310/398 (77.9%)
# Similarity:   310/398 (77.9%)
# Gaps:          16/398 ( 4.0%)
# Score: 1178.0
# 
#
#=======================================

BSNT_06035         1 GTGAAAAAAACAATCAAAGTAGCTGCAGCAGTGATTAAAAACGATAAAGA     50
                     .|||||||||||||.||||||||.||.|||||.||..||||.|| |||.|
RBAM_036380        1 TTGAAAAAAACAATAAAAGTAGCCGCCGCAGTCATACAAAATGA-AAACA     49

BSNT_06035        51 TATGATAT--TATGTGCACTTCGTTCGCCAATCATGTCTTTGGCCAATCT     98
                      ||||.||  |||||||.||.|||||.||||..||||||.||.|.|||||
RBAM_036380       50 -ATGAAATTCTATGTGCTCTACGTTCTCCAACAATGTCTCTGCCTAATCT     98

BSNT_06035        99 ATGGGAATTCCCAGGAGGGAAACTTGAAGAGGGTGAGAATGCACGAGAAG    148
                     .|||||.||.||.||.||.||.||||||||.||.||||||||||||||||
RBAM_036380       99 GTGGGAGTTTCCTGGTGGAAAGCTTGAAGAAGGGGAGAATGCACGAGAAG    148

BSNT_06035       149 CTCTTGTAAGAGAAATTCATGAGGAGCTTGGTTGTAAAATTGAAGCAGGT    198
                     |.|||||||||||||||.|.|||||.||||.|||||||||||..||.||.
RBAM_036380      149 CACTTGTAAGAGAAATTGAAGAGGAACTTGATTGTAAAATTGTTGCGGGC    198

BSNT_06035       199 GAAATAATTGCTGACATTCATCACGAATATGAAAAAGTCATTGTTAATTT    248
                     ||..|.||.||.||.||||||||.||||||||.||.|||||.||.|||||
RBAM_036380      199 GATGTGATAGCCGATATTCATCATGAATATGAGAAGGTCATCGTCAATTT    248

BSNT_06035       249 GATTTCTATTCAAGCGAAAATTGTA-GAGGATGAA-CCTGTTGCCAAAGA    296
                     .|||||.||..|||||||.|||||| .|||  ||| ||.||.||.|||||
RBAM_036380      249 AATTTCAATAAAAGCGAAGATTGTATCAGG--GAAGCCGGTAGCAAAAGA    296

BSNT_06035       297 ACATGCGGAACTCAGATGGGTGCC----CGTGAGTGAACTTGAGTCACTT    342
                     .|||||||||.|||||||||||||    ||||||    ||.||.|||||.
RBAM_036380      297 GCATGCGGAATTCAGATGGGTGCCTATTCGTGAG----CTAGAATCACTA    342

BSNT_06035       343 GAATGGGCACCTGCTGATCTTCCAACCGTAAATGCACTAGTTAATTAA    390
                     ||.||||||||.|||||||||||.||||||..||...||.||..||||
RBAM_036380      343 GAGTGGGCACCCGCTGATCTTCCGACCGTATCTGTTTTAATTCGTTAA    390


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