Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06034 and RBAM_036370
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Amino acid alignment /
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Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:31
# Commandline: needle
# -asequence dna-align/BSNT_06034.1.9828.seq
# -bsequence dna-align/RBAM_036370.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06034-RBAM_036370.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06034-RBAM_036370.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06034
# 2: RBAM_036370
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3187
# Identity: 2360/3187 (74.1%)
# Similarity: 2360/3187 (74.1%)
# Gaps: 107/3187 ( 3.4%)
# Score: 8507.5
#
#
#=======================================
BSNT_06034 1 ATGAAAAAAAACAGTGGTTTTCATGAAGAATTGCAAGAAAAGCACCAGCT 50
||||.|||..|.||.||.||.|||||.|||.|.||..||.|.||..|.||
RBAM_036370 1 ATGAGAAATCATAGAGGCTTCCATGAGGAAATCCAGCAACAACAAAAACT 50
BSNT_06034 51 TTATCCGGTTGA-----ACATCGTTTTCAGCCTGTTTTACCGAAAGAATA 95
|||||| | ||||||..||||.||.||....||.||||||||
RBAM_036370 51 TTATCC-----AACATCACATCGCATTCAACCGGTCAGCCCTAAAGAATA 95
BSNT_06034 96 TCCAGAAATTTTAACTTTACATATAGCAAAACAATTTGGCGAAAAAATCA 145
|.||||..|.||.||||||||||..|||||||||.|..||||.|.|.|..
RBAM_036370 96 TGCAGAGGTGTTGACTTTACATACGGCAAAACAACTGAGCGAGACATTTC 145
BSNT_06034 146 AAACGCTTGTTCATCACGGACAATATAATCAGGCGGTTGAATTAACCCAA 195
||||.|||||..||||.|..||||||.|.||.|||.||.|..|.|.|.|.
RBAM_036370 146 AAACACTTGTGGATCAAGATCAATATGAACAAGCGATTCAGCTGAGCGAG 195
BSNT_06034 196 AAAATATCTTCTGATCTTGGTAATGATACTGCCTTTACAATACCACTTTC 245
|||.|..|.|||.|.|||||..|..||||....|||.||.||||||||||
RBAM_036370 196 AAAGTTGCCTCTCAGCTTGGACAACATACGAATTTTTCATTACCACTTTC 245
BSNT_06034 246 TTCAGTTCTTTATCATGTAGGTGACCTGGATCTGCCTGTGTCAGAGCACT 295
..||||.||||||..|.||...||..||||.||.|||.|.||||||.|.|
RBAM_036370 246 CACAGTGCTTTATAGTTTAAACGAAATGGAACTTCCTATTTCAGAGGAAT 295
BSNT_06034 296 TTTCGTTATCA-CGGTTGAACCTACTCGGAAACTATAGAGCGGATGATAA 344
|.||..|| || ||..||||.||.||.|||||..||..|.|..|||||||
RBAM_036370 296 TCTCTCTA-CATCGTCTGAAACTGCTAGGAAATCATCAAACTCATGATAA 344
BSNT_06034 345 TTTTTTTAAAGCATTAAAGAATGAAATGTTAACTGCTGATCGTGTGGATT 394
.|||||.|||||||||||..|.||.||||||||.||.|||||.||.||.|
RBAM_036370 345 CTTTTTCAAAGCATTAAAACACGAGATGTTAACGGCGGATCGGGTAGACT 394
BSNT_06034 395 TTATGGTCAGTTTTACAAGATGGTCTGGCGTCCAACTTCTTATTCCACCA 444
|||||||.|||||||||||.||||||||.||.||.|||.|.||.||.||.
RBAM_036370 395 TTATGGTTAGTTTTACAAGGTGGTCTGGTGTTCAGCTTTTGATCCCTCCG 444
BSNT_06034 445 TTACAAGAGCTTAATAAGCGTAATGTGCCAGTACGTATTATCACATCAAC 494
.|.||.||||||..|||..|..||||.||.|||||.||.||.|||||.||
RBAM_036370 445 CTTCAGGAGCTTGCTAAAAGACATGTCCCTGTACGCATCATTACATCTAC 494
BSNT_06034 495 ATATATGGGAATTACTGAACCTAAAGCCCTTAA-ACAGCTCATGCAATTT 543
.||||||||.|||||.|||||.|||| |.|||| |||.||..|.||||||
RBAM_036370 495 CTATATGGGTATTACAGAACCGAAAG-CGTTAAGACATCTTCTTCAATTT 543
BSNT_06034 544 CAAAATGTCGACTTGAGAATTGTAAATGATTACAGTCAATCGTTTCATAC 593
.|||||||.||.||||.|||||.||||||.||.|...||||.||.|||||
RBAM_036370 544 GAAAATGTTGAGTTGAAAATTGCAAATGAATATAAAAAATCTTTCCATAC 593
BSNT_06034 594 AAAAGCTTACTTATTTGAACGTCT-TTCAGGGCAACATAGTGTCATTATT 642
.|||||.|||||||||||||| || |||.||.||.||||||||||||.|.
RBAM_036370 594 GAAAGCATACTTATTTGAACG-CTGTTCTGGACAGCATAGTGTCATTGTA 642
BSNT_06034 643 GGATCATCAAATCTCTCGCAATCCGCTCTGACCACTGGGTATGAGCTAAA 692
|||||.||||||||.||.|||.|.||.||.||.||.|||||||||.||||
RBAM_036370 643 GGATCTTCAAATCTATCACAAGCTGCACTTACGACCGGGTATGAGTTAAA 692
BSNT_06034 693 TGCAAGAATACCAGATACAAAATATCTTCCAATTTTTCAACAAACAAAAG 742
||..|||.||||.||.||.|.||||||.||..|||.||||||||||||||
RBAM_036370 693 TGTTAGACTACCTGAAACCAGATATCTCCCCGTTTATCAACAAACAAAAG 742
BSNT_06034 743 ATGTCTTTAATAAAGTATGGGTCGAAAAAACACAACCGGTCGATGACCAG 792
||.|.|||.|.|..||.|||...|||||.|||||.||.||.||.||.||.
RBAM_036370 743 ATTTGTTTGACACTGTTTGGAATGAAAAGACACAGCCTGTTGACGAACAA 792
BSNT_06034 793 TTCTTAAAAGCTTATGAAGAATTTCAAGCAGCTAATCACAAAA--TGAGC 840
||.|||.||||.|||||.|||||.||||||| .||.| ||||| |.||.
RBAM_036370 793 TTTTTACAAGCCTATGAGGAATTCCAAGCAG-GAAGC-CAAAAGGTAAGT 840
BSNT_06034 841 GCGTCTCTCGTCT-CTCAAAACTCTCTTTACCAAACAAAAATACAACCTA 889
||.|| ||...|| |||||||||||||||||.||||.|||||....||.|
RBAM_036370 841 GCTTC-CTTTGCTGCTCAAAACTCTCTTTACAAAACGAAAATGTCCCCGA 889
BSNT_06034 890 ATGCCATGCAAGAAATAGCGCTTA-AAAACCTCAAGAAAACGAGAGAAC- 937
|||||||||||.|...|||| ||| .||||||.||.|||||.||| |||
RBAM_036370 890 ATGCCATGCAAAAGGAAGCG-TTACGAAACCTTAAAAAAACAAGA-AACG 937
BSNT_06034 938 AAGGTGAGGAAAGGGCTGTTATTATCGCTGCAACTGGTACAGGGAAAACA 987
||||.|||..||..||.||.||.|||||.||.|||||.||.||.||||||
RBAM_036370 938 AAGGGGAGACAAAAGCAGTCATCATCGCCGCCACTGGAACCGGAAAAACA 987
BSNT_06034 988 TATCTTGCAGCATTTGATTTTTCCGAATATCAACCAAAAAAATATCTTTT 1037
|.|.|.|||||||||||||||....|||.|.|||||||.|||||||||||
RBAM_036370 988 TTTTTAGCAGCATTTGATTTTGAGCAATTTAAACCAAATAAATATCTTTT 1037
BSNT_06034 1038 TATTGCTCATCGTGAGGAGTTACTAACTAAAGCCATTGAAACATTTGAAA 1087
|.||||.||.||.||.||||||||.||.|||||.||.||||||||..|.|
RBAM_036370 1038 TCTTGCCCACCGGGAAGAGTTACTTACAAAAGCAATCGAAACATTCCAGA 1087
BSNT_06034 1088 AAGTCACAAATGACCATGATAACTTTGGATTATTAACTGGATCGAAAAAA 1137
|||||||.|||.|.|||||..|.|||||.|||||.||||||.||||||||
RBAM_036370 1088 AAGTCACCAATAATCATGAAGATTTTGGTTTATTGACTGGAACGAAAAAA 1137
BSNT_06034 1138 GAATGGAATAAAAGGTTTTTATTTAGCACAGTTCAAACCTTGTATAAAGA 1187
|||.|..||||..|.||||||||||||||.||.|||||..|..|||||.|
RBAM_036370 1138 GAAAGAGATAAGCGTTTTTTATTTAGCACTGTACAAACGCTACATAAAAA 1187
BSNT_06034 1188 AGAAACATTAAAACGGTTTGCACCAGATGAATTTGATTACATTGTCATTG 1237
|||||||||..||...|||.||.|||||||||||||.||||||||.||||
RBAM_036370 1188 AGAAACATTGGAATCCTTTTCAACAGATGAATTTGACTACATTGTGATTG 1237
BSNT_06034 1238 ATGAATTTCATCATGCAGAAGCCTCTACCTATCAATCAGTGTTGAATTAC 1287
|||||||.||||||||||||||.||||||||||||.|.||.||.||.|||
RBAM_036370 1238 ATGAATTCCATCATGCAGAAGCATCTACCTATCAAGCTGTATTAAACTAC 1287
BSNT_06034 1288 TTTAAACCTGGATTCTTATTAGGTTTAACTGCAACTCCAGAACGTTTAGA 1337
||||.|||....||.||||||||||||||||||||.|||||.|||.|.||
RBAM_036370 1288 TTTACACCAAAGTTTTTATTAGGTTTAACTGCAACACCAGAGCGTCTTGA 1337
BSNT_06034 1338 CGGTAAAGATGTACTTGAAATCTGCAATCATAATGTTGTCTATGAAATCC 1387
||||||||||||.|||.|.||.||..|||||||||||||.||.||||||.
RBAM_036370 1338 CGGTAAAGATGTGCTTCAGATTTGTGATCATAATGTTGTTTACGAAATCA 1387
BSNT_06034 1388 GCCTTCGAGATGCGTTAGAAGCTGAATTGCTTGCCCCATTTCATTATTTT 1437
|.||.||.|||||..||.|.||.||..|.|||||.||||||||.||||||
RBAM_036370 1388 GACTCCGCGATGCCCTAAAGGCAGAGCTACTTGCACCATTTCACTATTTT 1437
BSNT_06034 1438 GGTATTCCGGACCATACTGTTGATTACGATAAAGTGAAAATAACAAACGG 1487
||.|||.|.||.||||||||.||||||||.|||||.|||.|.|.|||.||
RBAM_036370 1438 GGAATTTCAGATCATACTGTAGATTACGAAAAAGTAAAAGTGAAAAATGG 1487
BSNT_06034 1488 GGTCTACGATGAACGTTCATTGGTTAATCATTTGAAAAATCATGAGCGGG 1537
..|.|||||.||....||..|.||..|||||||.||||.||||.|.||.|
RBAM_036370 1488 ACTGTACGAAGAGAAATCGCTAGTAGATCATTTAAAAACTCATAAACGAG 1537
BSNT_06034 1538 TCGATTATGTAATAAAGATGATAAATATGTACGGTTTCGACGGAGAAAGA 1587
|.||.|||.|.||.||||||||.||.|||||.||.|||.||||.||.|.|
RBAM_036370 1538 TAGAATATATCATGAAGATGATCAACATGTATGGATTCCACGGCGAGAAA 1587
BSNT_06034 1588 ATGTGTGGGTTGGGCTTCTGTACTAACGTTGAACATGCCCAATAT--ATG 1635
|||..|||.||.||.||||||||.|||||.||||| |.|||||| |||
RBAM_036370 1588 ATGGTTGGCTTAGGTTTCTGTACAAACGTCGAACA--CGCAATATACATG 1635
BSNT_06034 1636 AGCCAAGAATTTAATCAATTAGGATTACATACAACTTATTTAACAGGGCA 1685
||..|.|||||||||.||||.|||||..||||||||||.||||||||..|
RBAM_036370 1636 AGTGATGAATTTAATAAATTGGGATTTTATACAACTTACTTAACAGGAAA 1685
BSNT_06034 1686 AGATTCCTCAGCACAACGTCAGAAAGTGATTAGAGAACTTGAAGATCCGC 1735
.|||||..|.|||.||.|.||..|.||.|||.|..|..|.||.||.||.|
RBAM_036370 1686 TGATTCTCCTGCAAAAAGACAAGAGGTCATTCGTCATTTGGAGGACCCAC 1735
BSNT_06034 1736 ATCATAGTTTAGAACTGATTTTTACAGTAGATATTTTTAATGAAGGCATT 1785
|.||.|||||||||.|.||.|||||||||||||||||.||.|||||.||.
RBAM_036370 1736 ACCACAGTTTAGAAATTATATTTACAGTAGATATTTTCAACGAAGGAATA 1785
BSNT_06034 1786 GATATACCAAAATTAAACTTACTGCTTTTTTTGAGACCGACTGAATCACC 1835
|||||.|||||..|.||..||||..|.||..|.|||||.||.||||||||
RBAM_036370 1786 GATATTCCAAAGCTCAATCTACTATTGTTCCTTAGACCAACAGAATCACC 1835
BSNT_06034 1836 AACCATATTTATTCAACAGTTAGGAAGAGGATTAAGAAAGACTGATGATA 1885
|||.||.||.|||||.||.||||||.|.|||.|.|||||.|||||.||.|
RBAM_036370 1836 AACGATTTTCATTCAGCAATTAGGACGGGGACTTAGAAAAACTGACGACA 1885
BSNT_06034 1886 AAGAGTTTGTAACGGTACTTGATTTTATAGGAAACTATCAAAAATCGTTT 1935
||||||||||||||.||||.||||||||.||||||||||||||.||.||.
RBAM_036370 1886 AAGAGTTTGTAACGATACTGGATTTTATCGGAAACTATCAAAAGTCATTC 1935
BSNT_06034 1936 GTTATACCGCTAGCCCTTTCCGGACAAACTAGCCAAAAATCCTTTGATAA 1985
|||||.||.||.||.||.||.||||||||.|||||||||||.||||||||
RBAM_036370 1936 GTTATTCCACTCGCACTATCTGGACAAACAAGCCAAAAATCGTTTGATAA 1985
BSNT_06034 1986 AGATTCATTACGAGTTGCGGTTACCCATGAGTTTGCAGACTTACCAGGTG 2035
||||||..|.|||||.||.||.||.|||||||||.||||.|||||.||.|
RBAM_036370 1986 AGATTCCCTCCGAGTGGCCGTGACGCATGAGTTTTCAGATTTACCTGGAG 2035
BSNT_06034 2036 GATCTTATGTAGATCTTGCATCTGTAACGAAGAAAGAGATTTTACACAAA 2085
||||||||||.||.|||.||.|.||||||||||||||.||||||.|.||.
RBAM_036370 2036 GATCTTATGTTGACCTTTCAGCCGTAACGAAGAAAGAAATTTTAAATAAG 2085
BSNT_06034 2086 ATTGATAGTATTAAATTAAATTCAGCTGCCATGCTAAAAACATTATATTA 2135
||.|||..|||||||.|||||||||.|||||||||.|||||.||||||.|
RBAM_036370 2086 ATCGATCATATTAAACTAAATTCAGATGCCATGCTGAAAACGTTATATAA 2135
BSNT_06034 2136 TCAATTTAAACGAGATATTGGGCGTTCTCCAGAGCTACTTGATTTTCTTT 2185
.||||||||||.|||..|.||.||.||||||||..||.||||||||||.|
RBAM_036370 2136 GCAATTTAAACAAGAGCTCGGACGCTCTCCAGAATTAATTGATTTTCTAT 2185
BSNT_06034 2186 ATTCAGATCAAGCTCCAGGTCTTACCTTTTTTATAAAAAAATATAAGTCT 2235
|.||.||.||.||.||.||.|||||||||||||||||.|||||.||.||.
RBAM_036370 2186 ACTCTGAACAGGCACCTGGGCTTACCTTTTTTATAAAGAAATACAAATCG 2235
BSNT_06034 2236 TGGGTCGAAACGAAAAGAAAAATGGATGACCTTCATTCTT-TAGATAAAG 2284
|||||..|.||.||||..||||||||.|| .||.|.|.|| .||||.|||
RBAM_036370 2236 TGGGTACAGACCAAAAAGAAAATGGACGA-TTTGAATGTTACAGATGAAG 2284
BSNT_06034 2285 AAGTATTAAATGATTCGC----------TAGTTTTAAGAATGGTATCCTG 2324
.| ||||.| |.|||.||.|.||.|||.|...
RBAM_036370 2285 GA----------ATTCTCAACAACCCCTTGGTTGTAGGGATAGTAGCAAA 2324
BSNT_06034 2325 GTTAGAGCAACAGTTTCCGATTAAGTGGCCCTATGATTTATTATTGTTAC 2374
.|||||.||.||.||.||.|||||.|||||.|||||.|..|||.|.||||
RBAM_036370 2325 ATTAGAACAGCAATTACCTATTAAATGGCCTTATGAATGGTTAATTTTAC 2374
BSNT_06034 2375 AATGTGGATTTAATACACAGAGA----ATCACTGTAGAGGATGTTAAAAA 2420
|..|.||.||| ||||.|.| |||||..||||.|||||.|||.|
RBAM_036370 2375 AGAGCGGTTTT----CACAAAAATATCATCACAATAGAAGATGTAAAAGA 2420
BSNT_06034 2421 GTCTTTAGAAGATACA-TTTCATTTAAAAATCAAAAATACTAATATACAC 2469
.||.|||||| |.||| ||||||.|..||||||.| ||..|||.|||.
RBAM_036370 2421 ATCGTTAGAA-AAACAGTTTCATATTCAAATCACA---ACAGATACACAT 2466
BSNT_06034 2470 GACAACTTGATTAAACGATCTATGGAGCGTTTATCCACACCACATAAGAA 2519
||..||.|.|||.|.|||.|.||||||||||||.|.|.|.||.||.|.||
RBAM_036370 2467 GATGACCTCATTCAGCGAGCAATGGAGCGTTTAACGAAATCAGATCAAAA 2516
BSNT_06034 2520 ACAACAATGGAGTTTTGGTACAGT----GGAGGAAAATACGTTC------ 2559
|||..|.|||.|.|||||||||.| ||.| ||||.|||
RBAM_036370 2517 ACAGAATTGGCGCTTTGGTACATTACAAGGTG----ATACATTCAAGTTA 2562
BSNT_06034 2560 -ATACTACAATT-----AAATATTTTTGAACGTTTATGCCATCCTCGGTT 2603
|||| |.||.| |.||| ||.|||| ||||....||
RBAM_036370 2563 GATAC-AGAAGTGAGCGAGATA---TTAAACG--------ATCCATTATT 2600
BSNT_06034 2604 TGGTCCTTATATTAAGGAGCGTATCCAGTATGGTTTAACCGAATTTAGAC 2653
.||.||.||||||||||||||..||||.|||||..|.|..||||||||||
RBAM_036370 2601 CGGACCGTATATTAAGGAGCGCGTCCACTATGGACTGATTGAATTTAGAC 2650
BSNT_06034 2654 GCATGAATAATTTAGAAGCACTTTTATCTAGTGA-ACTACAACTCACCTT 2702
|.|||||.|||.|||||||.|||...||.|..|| |.|| |.||.||..|
RBAM_036370 2651 GTATGAACAATATAGAAGCCCTTGCTTCAAAAGAGATTA-AGCTTACAAT 2699
BSNT_06034 2703 GTATCAAACATATACTAGAAATGAACTCATACATTTATTTCAATCAACTG 2752
|||||||||.|||||.||||||||.|||||..||.|.|||||.|||||||
RBAM_036370 2700 GTATCAAACCTATACAAGAAATGAGCTCATTTATCTTTTTCAGTCAACTG 2749
BSNT_06034 2753 ATCAAGAGGGAACGTGGCGAGAAGGTGTAAGGAGAGTTAACAATAACTAC 2802
||||.||.||.||.||||||||.||||||.|.||||||||.|||.||||.
RBAM_036370 2750 ATCAGGAAGGGACTTGGCGAGAGGGTGTACGTAGAGTTAAAAATCACTAT 2799
BSNT_06034 2803 TTAATTTTTATTACATTAAATAAATCTAAAAAAGTTGAGGACCATTTGTT 2852
|||||.|||||.|..||.|||||.||..|||||||.||.||.||||||.|
RBAM_036370 2800 TTAATCTTTATCAATTTGAATAAGTCAGAAAAAGTAGAAGATCATTTGCT 2849
BSNT_06034 2853 ATATAAAGATTACTTTATAGATCCCCATCATTTTCACTGGCAAAGTCAAA 2902
||||||||||||.|||||.|||||....||||||||||||||||||||||
RBAM_036370 2850 ATATAAAGATTATTTTATTGATCCTAGCCATTTTCACTGGCAAAGTCAAA 2899
BSNT_06034 2903 ATCAAACATCACATGATTCTCCTGTAGGTCAGAATTTTATTAACCATAGA 2952
|.|||||.||||||...||....|||||.||.||.||||||.||||||..
RBAM_036370 2900 ACCAAACCTCACATACATCAAGCGTAGGGCAAAACTTTATTCACCATAAG 2949
BSNT_06034 2953 CAAAAAGAATATAAAATACATCTTTTCGTGCGTAAATTTAGCGAAATGCA 3002
.||||||.|||..|.||.|||.|.||.|||.|.|||||.|..||||||||
RBAM_036370 2950 GAAAAAGGATACCATATTCATTTATTTGTGAGGAAATTCACTGAAATGCA 2999
BSNT_06034 3003 TGACATCACCTTACCTTTTATTTATCTAGGTAAAGTTGATTACGTATCAA 3052
..|||||||.|||||.|||||||||.||||..|||..|||||||||||||
RBAM_036370 3000 CAACATCACTTTACCATTTATTTATGTAGGAGAAGCGGATTACGTATCAA 3049
BSNT_06034 3053 GCAATGGGGACAAACCTATGAATGTAATATGGAAGCTCCATCAGCCTGTC 3102
|..|.||.|||||.||.||||||||.|.||||||||||||||||||||||
RBAM_036370 3050 GTCACGGAGACAAGCCAATGAATGTCAAATGGAAGCTCCATCAGCCTGTC 3099
BSNT_06034 3103 CCAGAAAACTTGTATGTTGATTT----AATTAACTAG 3135
|||||||||.|||||||.||||| ||||||
RBAM_036370 3100 CCAGAAAACCTGTATGTGGATTTAACGAATTAA---- 3132
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