Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06001 and RBAM_036280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:30
# Commandline: needle
# -asequence dna-align/BSNT_06001.1.9828.seq
# -bsequence dna-align/RBAM_036280___yxiG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06001-RBAM_036280___yxiG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06001-RBAM_036280___yxiG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06001
# 2: RBAM_036280___yxiG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 486
# Identity: 241/486 (49.6%)
# Similarity: 241/486 (49.6%)
# Gaps: 177/486 (36.4%)
# Score: 512.0
#
#
#=======================================
BSNT_06001 1 GTGAATAATCCAATACAA--AAGCATCTGA-----TTGATT-------CG 36
||| |.|||.|||| || ||| |.|||| ||
RBAM_036280__ 1 GTG-----TACAAGACAATTAA-----TGAATGGGTAGATTATATAGACG 40
BSNT_06001 37 GA---------ATTCACCATATTAAAAACAGATTTTCAGTTCTTTAAAAA 77
|| .|.|..|||.|| ||.|||||..|.||||||||
RBAM_036280__ 41 GAGGGTGCGCTGTCCTTCATTTT-------GACTTTCATGTGTTTAAAAA 83
BSNT_06001 78 AGAATTTATTCTTT-ATTTAGAAATGGATACGAAGG-----GAAA--GAA 119
||| .|||| |.||| .|||.| ||| |||| .||
RBAM_036280__ 84 AGA------GCTTTCACTTA-----AGATTC--AGGTCGTTGAAAATAAA 120
BSNT_06001 120 GCAGCA-----GCATCGTATT-TTATTCAAGAATGTATCATCATTATTT- 162
||.|.| ||||...||| ||.||||| ||||.|.|||| |.|||
RBAM_036280__ 121 GCCGAATGTACGCATAACATTCTTTTTCAA-AATGCAGCATC--TGTTTA 167
BSNT_06001 163 TTTTA-TGCCGGCAAGGAATCGTCTTTAAAAGATGTTGCT--TATG---- 205
||||| ||| ||||.|||.| ||||
RBAM_036280__ 168 TTTTAGTGC---------------------AGATATTGGTGATATGAGAT 196
BSNT_06001 206 -GGGAAAAATGGAT------------------------TTTGAATTCATT 230
.|.||||||.||| |||||..|.|
RBAM_036280__ 197 TAGAAAAAATAGATCCGGAAGAATACAATTGGCAAGTATTTGAGATGA-- 244
BSNT_06001 231 CTCTTACTATCCGAAGGGTATTGG-AACATTATATC--ACCCTTTAATTG 277
.||||.|.|||.|.||.||.|| || |.|||| |..||.|||||.
RBAM_036280__ 245 --GTTACCACCCGGAAGGAATCGGTAA---TCTATCAAATGCTGTAATTC 289
BSNT_06001 278 AAGATTATGAATCGAATGCAAACGTTTTGATTGGAATTA-----ATCAAG 322
..||.|||.||||.|||||.|| |||..||..||.|| |.||.|
RBAM_036280__ 290 CGGAGTATCAATCAAATGCTAA---TTTTCTTATAAATATGAACAGCATG 336
BSNT_06001 323 CTGTCTA-TGCAGTTGAAACTGAAAGGGT----TTTC-----------TT 356
||| | |||.||.|||.||||||..|| |||| ||
RBAM_036280__ 337 CTG---ATTGCTGTAGAAGCTGAAACAGTTCGCTTTCACGACCAATCATT 383
BSNT_06001 357 TGAT-----TCAACTGAAATATATGCCTCAACATAG 387
|.|| |||.|.||||| ||||.
RBAM_036280__ 384 TTATGCGTATCATCCGAAAT-----------CATAA 408
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