Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05998 and RBAM_036260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:30
# Commandline: needle
# -asequence dna-align/BSNT_05998___yxiI.1.9828.seq
# -bsequence dna-align/RBAM_036260___yxiI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05998___yxiI-RBAM_036260___yxiI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05998___yxiI-RBAM_036260___yxiI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05998___yxiI
# 2: RBAM_036260___yxiI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 506
# Identity: 330/506 (65.2%)
# Similarity: 330/506 (65.2%)
# Gaps: 61/506 (12.1%)
# Score: 944.0
#
#
#=======================================
BSNT_05998___ 1 ATGATGAATTGGCGCGCTTTAAGT-CAGACAAAACAAGACCGCATCTGG- 48
||||||||||..|.|||.||| .|||..|.|| |||.|||.|.|||
RBAM_036260__ 1 ---ATGAATTGGCATGGTTTGAGTGAAGAGGAGAC-AGAGCGCTTGTGGC 46
BSNT_05998___ 49 TCAGAAGTGAA-CAAGCTCA-TAAAATGGAAGCCCGGAAGCAGATGT-CA 95
.||| .||||| | ||.|| |.||||||||.||.||.||.|.||.| |.
RBAM_036260__ 47 GCAG-GGTGAATC--GCGCAGTGAAATGGAAACCGGGCAGTATATTTGCT 93
BSNT_05998___ 96 TCACATCATCCCGCCTGATCCATATCGAGTGTTTGA--TATCTCAAGCGC 143
||| ||.|..||.||..|.||.|.||..||.||||| |||||||||
RBAM_036260__ 94 TCA-ATGAAACCTCCAAAGCCGTTTCAGGTCTTTGATGTATCTCAAG--- 139
BSNT_05998___ 144 GATGAGCAGTAAAGCTGGTCATAATGATGTGAGCGGAGTGCT--AAGTGA 191
||| ||| |||..|.|||..|.|| || ||
RBAM_036260__ 140 GAT---------------TCA-----ATGGTATCGGTTTTCTGGAA--GA 167
BSNT_05998___ 192 TTTAGAGACTTC-TATTTTAAAAGCATTTCAATTAGGTACTGGAAAGAAC 240
|..||||| |.| .|||.||||.||||||||||...||||...||||.|.
RBAM_036260__ 168 TGCAGAGA-TGCAGATTCTAAAGGCATTTCAATCTTGTACGTTAAAGCAT 216
BSNT_05998___ 241 GATGTAATGTACGCACTAGATTGGCAGCATGACGGATATACCTTTAGTCC 290
||..|.|||||.||.||.||.|||||||||||..|.|||...||||.|||
RBAM_036260__ 217 GAGTTTATGTATGCGCTGGACTGGCAGCATGAATGTTATCTATTTAATCC 266
BSNT_05998___ 291 TCATCAGGCAATGCCTAAGGATGAATTTGGCGAATGGCCTGTTCCCGTAT 340
||||..|.||||...|||.||||||||.||.|||||||.|||.|||||..
RBAM_036260__ 267 TCATGTGCCAATTGATAAAGATGAATTCGGTGAATGGCTTGTCCCCGTTA 316
BSNT_05998___ 341 TTCCAAATGGAGACTATTATTTCTTTTTTCATCAGGACTTCTC-CTGGGG 389
|||||||.||||||||||.|||||||.||||.|||||.|| || .|||||
RBAM_036260__ 317 TTCCAAACGGAGACTATTGTTTCTTTATTCACCAGGAGTT-TCAGTGGGG 365
BSNT_05998___ 390 ACTTTTGGGAGACCCGTGG----AAATTGACAATCACTGTGTTTGGTGAA 435
.||.|||||.||.|||.|| || ||.||.||..|.|||||...|
RBAM_036260__ 366 GCTGTTGGGGGATCCGCGGCAGCAA----ACCATTACGATATTTGGCTCA 411
BSNT_05998___ 436 GAGCTGTTGGAGGCGATAGATCATGATCCG--CCTATCCTGTTTCAAAAT 483
..|||..|...||||||||| |.||..|| |||.||.|.||||||||.
RBAM_036260__ 412 CCGCTAATAAGGGCGATAGA--AAGAAACGCTCCTGTCTTATTTCAAAAG 459
BSNT_05998___ 484 AGATGA 489
.||
RBAM_036260__ 460 TGA--- 462
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