Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05990 and RBAM_036230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:29
# Commandline: needle
# -asequence dna-align/BSNT_05990.1.9828.seq
# -bsequence dna-align/RBAM_036230.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05990-RBAM_036230.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05990-RBAM_036230.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05990
# 2: RBAM_036230
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 428
# Identity: 223/428 (52.1%)
# Similarity: 223/428 (52.1%)
# Gaps: 130/428 (30.4%)
# Score: 525.0
#
#
#=======================================
BSNT_05990 1 -TTGAATATCACACAATACGAGAAATTGAAAAAGCATCTTTCTGATG--- 46
|.|||...|||| ||..|||.|||||| .|||||.||
RBAM_036230 1 ATGGAACGGCACA---------AACATGAGAAAGCA--GTTCTGCTGGGG 39
BSNT_05990 47 -CGGAT---ACAGGTCCATTTACATTAAACGAGTTTTCGTTCTATA---- 88
||||| .|.|||...|||..|||.|..||||||.|||||||||
RBAM_036230 40 CCGGATTCGCCGGGTTGTTTTGAATTGACGGAGTTTACGTTCTATACCGG 89
BSNT_05990 89 -TGAAAGAAGATGATCGTTAT-ATACATATTCCTGTGTTTGAATTAAAAC 136
|..||..||.| |||| ||| |.||.||.|||||||
RBAM_036230 90 GTATAACGAGTT-----TTATGATA-AAATCCCGGTGTTTG--------- 124
BSNT_05990 137 TATCAGCTCAAAC---CTG--TGACATTCAT---------TTACGGTTTG 172
||||.||.| ||| .||||.| || .|.||.||||
RBAM_036230 125 ----AGCTGAAGCTGACTGATGGACAGT-ATGATGCCGTGCTGCGTTTTG 169
BSNT_05990 173 AAGACGTTAGTGCATCAAAGCTGGATGATCTTGAATCCAT---CGATTCT 219
|.|..||.||.||..|...||||||||||||||||..||| |||
RBAM_036230 170 AGGGTGTGAGGGCTGCCCGGCTGGATGATCTTGAAAGCATCACCGA---- 215
BSNT_05990 220 GTTGCAT-----TGGAGATTGTACCGACTGACGATCAA-------TGGGA 257
||| ||||.|| |.|.| ||.||.| |||||
RBAM_036230 216 ----CATCCATCTGGATAT----CAGCC---CGGTCGACGGCGGCTGGGA 254
BSNT_05990 258 A-AGACTCCGTTATTATGTGTATGAC---GAAGAAAACCAAATAAGCTTC 303
| .|| ||||.||.|||||..||||| ||||.||.| ||.|||||.
RBAM_036230 255 ATCGA-TCCGCTACTATGTCGATGACGGGGAAGGAAGC---ATGAGCTTT 300
BSNT_05990 304 TATTGCGGAGGTTGGGATGTG------ATCAAGTGTGACAAGAAGTCACA 347
|||||||.....||||..||| ||.||| .|.|||.||||.|.
RBAM_036230 301 TATTGCGCCAAATGGGTCGTGCTTGACATGAAG---AAAAAGCAGTCCCC 347
BSNT_05990 348 CTAA------------------------ 351
|.||
RBAM_036230 348 CGAATGGCCCGGCAAAACGTCAGGGTAA 375
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