Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05982 and RBAM_036200

See Amino acid alignment / Visit BSNT_05982 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:29
# Commandline: needle
#    -asequence dna-align/BSNT_05982___licT.1.9828.seq
#    -bsequence dna-align/RBAM_036200___licT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05982___licT-RBAM_036200___licT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05982___licT-RBAM_036200___licT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05982___licT
# 2: RBAM_036200___licT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 845
# Identity:     749/845 (88.6%)
# Similarity:   749/845 (88.6%)
# Gaps:          28/845 ( 3.3%)
# Score: 3414.5
# 
#
#=======================================

BSNT_05982___      1 ATGAAAATTGCGAAGGTGATCAACAATAATGTGATCAGCGTGGTCAATGA     50
                     .||||.||||||||.||.||.||.||||||||..||||.|||.||||.||
RBAM_036200__      1 TTGAAGATTGCGAAAGTCATTAATAATAATGTCGTCAGTGTGCTCAAAGA     50

BSNT_05982___     51 ACAGGGGAAA----GAATTGGTCGTCATGGGCAGGGGGCTCGCGTTTC--     94
                     |    ||.||    ||||||||..||||||||.||||..|.||.||||  
RBAM_036200__     51 A----GGCAATCAGGAATTGGTTATCATGGGCCGGGGCATTGCTTTTCAA     96

BSNT_05982___     95 -AGAAAA----AGTCCGGCGATGATGTCGATGAAGCCCGCATTGAGAAAG    139
                      ||||||    ||.||.|       ||.||||||||||||||||||||||
RBAM_036200__     97 AAGAAAACGGGAGACCCG-------GTAGATGAAGCCCGCATTGAGAAAG    139

BSNT_05982___    140 TGTTCACGCTCGATAACAAGGATGTATCAGAAAAGTTCAAAACCCTTTTG    189
                     |||||||||||||||||||.||||||||.|||||||||||||||||||||
RBAM_036200__    140 TGTTCACGCTCGATAACAAAGATGTATCCGAAAAGTTCAAAACCCTTTTG    189

BSNT_05982___    190 TATGATATACCGATCGAGTGTATGGAAGTATCCGAAGAGATTATCAGCTA    239
                     ||||||||.||||||||.||||||||||||||||||||||||||||||||
RBAM_036200__    190 TATGATATCCCGATCGAATGTATGGAAGTATCCGAAGAGATTATCAGCTA    239

BSNT_05982___    240 CGCAAAATTACAGCTCGGCAAAAAGCTCAACGACAGCATCTATGTGTCGC    289
                     .||.||||||||||||||||||||||||||.|||||||||||||||||||
RBAM_036200__    240 TGCGAAATTACAGCTCGGCAAAAAGCTCAATGACAGCATCTATGTGTCGC    289

BSNT_05982___    290 TGACCGACCATATTAACTTTGCCATCCAGCGCAACCAGAAAGGGCTTGAT    339
                     ||||||||||||||||||||||.|||||||||||..||||||||||.|||
RBAM_036200__    290 TGACCGACCATATTAACTTTGCGATCCAGCGCAATAAGAAAGGGCTGGAT    339

BSNT_05982___    340 ATCAAAAACGCCTTGCTGTGGGAAACAAAACGGCTGTACAAAGACGAATT    389
                     ||||||||.|||||.|||||||||||.|||||||||||||||||||||||
RBAM_036200__    340 ATCAAAAATGCCTTACTGTGGGAAACGAAACGGCTGTACAAAGACGAATT    389

BSNT_05982___    390 TGCGATCGGCAAAGAAGCGTTGGTTATGGTAAAAAACAAGACAGGTGTGT    439
                     |||.|||||||||.|||||||||..|||||||||||||||||.||.||||
RBAM_036200__    390 TGCAATCGGCAAACAAGCGTTGGCCATGGTAAAAAACAAGACTGGCGTGT    439

BSNT_05982___    440 CTCTGCCAGAGGATGAAGCAGGCTTTATTGCTCTGCATATTGTAAATGCC    489
                     |||||||.|||||||||||||||||||||||.|||||||||||.||||||
RBAM_036200__    440 CTCTGCCGGAGGATGAAGCAGGCTTTATTGCGCTGCATATTGTCAATGCC    489

BSNT_05982___    490 GAGCTGAATGAAGAGATGCCCAATATTATCAACATTACAAAAGTCATGCA    539
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_036200__    490 GAGCTGAATGAAGAGATGCCCAATATCATCAACATTACAAAAGTCATGCA    539

BSNT_05982___    540 AGAGATTTTGAGTATTGTAAAATACCATTTTAAGATTGAATTCAACGAAG    589
                     |||||||||||||||.|||||||||||||||||||||||.||||||||.|
RBAM_036200__    540 AGAGATTTTGAGTATCGTAAAATACCATTTTAAGATTGACTTCAACGAGG    589

BSNT_05982___    590 AATCGCTTCACTATTATCGGTTCGTCACCCACTTAAAATTTTTCGCGCAA    639
                     ||||.|||||||||||||||||.||||||||||||||.|||||||||||.
RBAM_036200__    590 AATCACTTCACTATTATCGGTTTGTCACCCACTTAAAGTTTTTCGCGCAG    639

BSNT_05982___    640 CGTCTATTTAACGGCACTCACATGGAAAGCCAGGACGATTTTTTGCTGGA    689
                     |||||.|||||||||||.||.|||||||||||||||||||||||||||||
RBAM_036200__    640 CGTCTTTTTAACGGCACACATATGGAAAGCCAGGACGATTTTTTGCTGGA    689

BSNT_05982___    690 TACAGTGAAAGAAAAGTATCATCGCGCGTATGAATGCACGAAGAAAATCC    739
                     .|||||||||||||||||.|||||.|||||||||||||||||||||||||
RBAM_036200__    690 GACAGTGAAAGAAAAGTACCATCGGGCGTATGAATGCACGAAGAAAATCC    739

BSNT_05982___    740 AAACCTACATTGAGCGGGAGTATGAGCACAAGCTCACAAGTGACGAGCTG    789
                     ||||.|.|||||||.|||.||||||.|||||||||||.||||||||||||
RBAM_036200__    740 AAACATGCATTGAGAGGGCGTATGAACACAAGCTCACCAGTGACGAGCTG    789

BSNT_05982___    790 CTGTATTTAACCATTCACATAGAAAGGGTAGTTAAACAAGCATAA    834
                     |||||||||||.||||||||||||||||||||.|||.||      
RBAM_036200__    790 CTGTATTTAACGATTCACATAGAAAGGGTAGTCAAATAA------    828


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05982 and RBAM_036200

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
