Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05976 and RBAM_036160

See Amino acid alignment / Visit BSNT_05976 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:28
# Commandline: needle
#    -asequence dna-align/BSNT_05976___yxiS.1.9828.seq
#    -bsequence dna-align/RBAM_036160___yxiS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05976___yxiS-RBAM_036160___yxiS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05976___yxiS-RBAM_036160___yxiS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05976___yxiS
# 2: RBAM_036160___yxiS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 318
# Identity:     216/318 (67.9%)
# Similarity:   216/318 (67.9%)
# Gaps:          36/318 (11.3%)
# Score: 725.0
# 
#
#=======================================

BSNT_05976___      1 ------ATGAA---------CGAAAAACAGCTCGCTGAAGCTTACGAACG     35
                           .||||         |||||||||.||||..|||..||||...||
RBAM_036160__      1 ATGATAGTGAAGCCGTTTACCGAAAAACAACTCGAAGAATATTACCGGCG     50

BSNT_05976___     36 CGATGAAAATATGATGATTTTGGTGTTTGCCCAATGGTGCGTGAACCATG     85
                     .||.|||||.||||||||||||||||||||||||||||||||.||.||||
RBAM_036160__     51 TGACGAAAACATGATGATTTTGGTGTTTGCCCAATGGTGCGTCAATCATG    100

BSNT_05976___     86 ATCTTGATCCGATGGAGCTGTACGCCAAAGCGTATCCGCAGCAAAAGC--    133
                     |.|||||||||||||...|.|||..||..||.||||| |.|  |.|||  
RBAM_036160__    101 ACCTTGATCCGATGGCCATTTACAGCAGGGCTTATCC-CGG--ACAGCCT    147

BSNT_05976___    134 -TGAATGAA-AGCTTGAAAAAAACCATGGACGATCTGGTCGTGCCAAAAC    181
                      |.||.||| ||| ||..||||||....||.||.||.||||||||.||..
RBAM_036160__    148 TTAAACGAAGAGC-TGCGAAAAACGGCTGAAGAGCTTGTCGTGCCGAAGG    196

BSNT_05976___    182 ACGAAGCAGAGCACATTCCGGACCAGACTGTCATTGCGGTATTAGAGATG    231
                     |.|||.||||.|..|||||.||.||.||.||.||.|..||.||.||||||
RBAM_036160__    197 AGGAATCAGAACCGATTCCTGATCAAACCGTTATCGGCGTTTTGGAGATG    246

BSNT_05976___    232 TTCGGAAATACAGATTTGGCACAGGCCGTTCATGAAGCGATTTCTGGGCG    281
                     |||||.||..|.||||||||..|.||||||.|||.|||.|||     |||
RBAM_036160__    247 TTCGGCAACTCCGATTTGGCGGAAGCCGTTTATGCAGCCATT-----GCG    291

BSNT_05976___    282 CAA--------ACAGTAA    291
                     |||        ||.||||
RBAM_036160__    292 CAAAGACCTTCACGGTAA    309


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