Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05947 and RBAM_036060

See Amino acid alignment / Visit BSNT_05947 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:27
# Commandline: needle
#    -asequence dna-align/BSNT_05947___yxkD.1.9828.seq
#    -bsequence dna-align/RBAM_036060___yxkD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05947___yxkD-RBAM_036060___yxkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05947___yxkD-RBAM_036060___yxkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05947___yxkD
# 2: RBAM_036060___yxkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 844
# Identity:     658/844 (78.0%)
# Similarity:   658/844 (78.0%)
# Gaps:          14/844 ( 1.7%)
# Score: 2519.0
# 
#
#=======================================

BSNT_05947___      1 ATGAAAAAGAGAATGCTGGATGTACTTATGCTTGTGATTGGCGCTTTTTT     50
                     ||||||||||||.||||||||||.||.|||||..|.|||||.||||||.|
RBAM_036060__      1 ATGAAAAAGAGATTGCTGGATGTGCTGATGCTGATTATTGGGGCTTTTAT     50

BSNT_05947___     51 CTTCGCGCTTGCGGTTAATTTATTTGCGATTCCCAATGATCTTGGGGAAG    100
                     |||.||..|.||.|||||||||||.||.|||||.|||||||||||.||.|
RBAM_036060__     51 CTTTGCTTTGGCCGTTAATTTATTCGCCATTCCGAATGATCTTGGAGAGG    100

BSNT_05947___    101 GCGGAGTCACTGGGATTACGCTGATTTTGTATTATCTGTTTCAATGGTCT    150
                     ||||.||.||.||.||.||.|||||.|||||.|||.|||||.|||||||.
RBAM_036060__    101 GCGGGGTAACGGGAATCACCCTGATCTTGTACTATGTGTTTGAATGGTCG    150

BSNT_05947___    151 CCTGGTGTCACGAACTTTATCTTAAATGCG---TTTTTGCTTTTAATCGG    197
                     ||.||.||.|||||..|.||.||.||.|.|   ||.|||.||   |||||
RBAM_036060__    151 CCCGGGGTGACGAATATCATTTTGAACGGGATCTTATTGATT---ATCGG    197

BSNT_05947___    198 CTACAAGTTTCTT-GATGGAAAAACAACGGTTTATACGATCATTGCGGTT    246
                     .||.|| .||||| ||.||||||||||||.||||||||||||||.|.|||
RBAM_036060__    198 ATATAA-ATTCTTAGACGGAAAAACAACGCTTTATACGATCATTACCGTT    246

BSNT_05947___    247 GCGGCAAATTCGCTCTTTCTTCATCTGACACATGGGTGGAGCATT--CCG    294
                     |..||.||.||.||.|||||.||||||||.||||..||  |||.|  ||.
RBAM_036060__    247 GTCGCCAACTCACTGTTTCTGCATCTGACGCATGATTG--GCACTCGCCT    294

BSNT_05947___    295 TCTGATGAATTGATCATTAATACGATTTTCGCAGGTGTATTTGCCGGAGT    344
                     ||..|||||.|.||.||||||||.|||||.||.|||||.||||||||.||
RBAM_036060__    295 TCACATGAACTCATTATTAATACTATTTTTGCGGGTGTGTTTGCCGGTGT    344

BSNT_05947___    345 CGGGATCGGCATGATTATCCGGGTCGGCGGGACGACGGCTGGTTCCGCGA    394
                     |||.|||||.||.|||||.||.|||||.||.|||||.||.|||||.||.|
RBAM_036060__    345 CGGAATCGGGATCATTATTCGAGTCGGAGGCACGACTGCGGGTTCTGCCA    394

BSNT_05947___    395 TTCTGGCCAGAATTGCTAATAAATATTTAGACTGGAATATCAGCTATGCA    444
                     ||.||||.||.|||||.||.||||||.|.||.|||||||||||||||||.
RBAM_036060__    395 TTTTGGCGAGGATTGCGAACAAATATCTCGATTGGAATATCAGCTATGCG    444

BSNT_05947___    445 CTCTTGTTTTTTGATTTAATCGTAGTATTCAGCTCTTATTTTATTATTGG    494
                     ||.|||||.||||||.|.||.||.||.|||||.||||||||.||.||.||
RBAM_036060__    445 CTTTTGTTCTTTGATCTGATTGTCGTCTTCAGTTCTTATTTCATCATCGG    494

BSNT_05947___    495 TGCAGAAAAAATGATGTTTACGATCGTGATGCTGTATATCGGTACCAAAG    544
                     |||||||||||||||||||||.||.||.||||||||.|||||.||.||.|
RBAM_036060__    495 TGCAGAAAAAATGATGTTTACCATTGTCATGCTGTACATCGGAACGAAGG    544

BSNT_05947___    545 TGATGGACTTCATTATTGAAGGTTTGAATACGAAAAAAGCCATTACGGTC    594
                     ||||||||||.||.||||||||..||||||||||||||||..|.|||.|.
RBAM_036060__    545 TGATGGACTTTATCATTGAAGGCCTGAATACGAAAAAAGCGGTGACGATT    594

BSNT_05947___    595 ATTTCAGAAAATAAGAGTGAGATTGCAGAGCAGGTAAATAC-CTTGATGG    643
                     ||.||.||..|||||...||.||.||.||.|||||.||||| ||| ||||
RBAM_036060__    595 ATATCTGAGCATAAGCACGAAATCGCCGAACAGGTCAATACGCTT-ATGG    643

BSNT_05947___    644 ATCGGGGCGTGACGATTTTATCAGGGAAGGGAAATTATACGGGCCAGTCA    693
                     |..|.||.||.|||.|..|.||.||.||.||||||||.|||||.|||||.
RBAM_036060__    644 ACAGAGGGGTTACGCTGCTGTCGGGTAAAGGAAATTACACGGGGCAGTCG    693

BSNT_05947___    694 AAAGAGATTTTGTATATCGTCATTAACAAACAGGAGCTGTCTATGCTGAA    743
                     ||.||.|||||.|||||||||||..|.|||||.|||||.||.|||||.||
RBAM_036060__    694 AAGGAAATTTTATATATCGTCATCCAGAAACAAGAGCTTTCCATGCTCAA    743

BSNT_05947___    744 AAAAATCATTAGAAGCTGCGACAAAAAAGCGTTTGTGATCGTACATGACG    793
                     ||||||.||||.||||||.||.|.||||||||||||.||.||.|||||.|
RBAM_036060__    744 AAAAATTATTAAAAGCTGTGATACAAAAGCGTTTGTCATTGTTCATGATG    793

BSNT_05947___    794 TACGCGATGTGTTTGGCGAAGGGTTTGTGGATATATCTAAATAA    837
                     |.||.||.||.|||||.|||||.||.||.|||||.|||||||||
RBAM_036060__    794 TGCGTGACGTCTTTGGTGAAGGCTTCGTCGATATCTCTAAATAA    837


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