Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05945 and RBAM_036050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:27
# Commandline: needle
# -asequence dna-align/BSNT_05945___yxkF.1.9828.seq
# -bsequence dna-align/RBAM_036050___yxkF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05945___yxkF-RBAM_036050___yxkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05945___yxkF-RBAM_036050___yxkF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05945___yxkF
# 2: RBAM_036050___yxkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1010
# Identity: 594/1010 (58.8%)
# Similarity: 594/1010 (58.8%)
# Gaps: 232/1010 (23.0%)
# Score: 1595.5
#
#
#=======================================
BSNT_05945___ 1 ATGAAATCGCTGCTGGCTATTTATCCCG--------GTTCGATTGTGTCT 42
|||||..||.|..||||.||||| |||| || |||||
RBAM_036050__ 1 ATGAACCCGTTATTGGCAATTTA-CCCGAGGGCTGTGT-------TGTCT 42
BSNT_05945___ 43 G--AGGAGCTTTGCATAAGG-GAAGGCTGTC-TATGTTTTTTTGATGAGA 88
| |.|.||| .||.|| |.|||.|||| |.||.||||.||||||||
RBAM_036050__ 43 GATACGTGCT----GTACGGCGGAGGATGTCTTTTGCTTTTATGATGAGA 88
BSNT_05945___ 89 GCAATCAGAGG------TATATCTCCATTCCGAAAACAGAGATCA--GTG 130
|.||| |||.||.||||||||||....||.|||| ..|
RBAM_036050__ 89 ------AAAGGCGGGTCTATGTCGCCATTCCGAAGGAGGATATCACCCCG 132
BSNT_05945___ 131 AAAAAGAAGTATTGGTGCTGCAATCATTTTTGACGCCTGCGGATGAGGGC 180
||..|||| |.||.|.|||.|||||.||||||||||.|
RBAM_036050__ 133 AAGGAGAA--ACTGCTTCTGGAATCACTTTTGACGCCCG----------- 169
BSNT_05945___ 181 AATCAACTGTCTATGAAATCACCTGAGGAAAACAAGTGGTTTTCGTTCCT 230
||||.|||| |||..|.| |
RBAM_036050__ 170 ----------------------CTGAAGAAA--AAGGCGAT--------T 187
BSNT_05945___ 231 TTTTTCCAGAG-----GG-------GAATTGCCGGCG-----TACATAAA 263
|||||||.||| || ||..||.||||| |.|...||
RBAM_036050__ 188 TTTTTCCGGAGACGGCGGCAGCAAAGAGGTGGCGGCGGTTTCTGCTGGAA 237
BSNT_05945___ 264 GAA------------------ACGGA----CG----AGATTTGTTCACTT 287
||| |.||| || .|.|||.|.||.|.
RBAM_036050__ 238 GAAGGCCCGGTGCCTGATGTCAAGGAGCTGCGTGTCCGTTTTATCCATTA 287
BSNT_05945___ 288 TCATTTATTCGGCAAAATAGAA-AGGAC-----GTCCTTTACAGAAGCGG 331
|.|.|||||.|| |||| .|||| |.|.||||||||||||.
RBAM_036050__ 288 TGACTTATTGGG------AGAACGGGACTGGGGGGCATTTACAGAAGCGC 331
BSNT_05945___ 332 TTCGCCATTTTTGGCCGGTGTCTTTTGTGATTGTGTGGATTCATGA--GG 379
|.||||||||.||||||||.||.|.|....||||..||| |..|| ||
RBAM_036050__ 332 TGCGCCATTTCTGGCCGGTTTCATATACAGTTGTCCGGA--CGGGAAGGG 379
BSNT_05945___ 380 A-CAGAGGCGTGATTGTCGAGCAGGAAAGTGAAGCGGCGGCGAAGAAGGG 428
| || ||||||||||||.|||.|.||| ||||.| ||||.|
RBAM_036050__ 380 ATCA-AGGCGTGATTGTGGAGGAAGAA----AAGCTG-------GAAGCG 417
BSNT_05945___ 429 CGAACTGGAATCG------CTCGCA---------AAAGTTCTTGAAAGTG 463
|.| ||.||| .||||| ||..||||.|||.|.|
RBAM_036050__ 418 CCA----GATTCGGATGACATCGCATCTTTTGTGAAGATTCTCGAAGGCG 463
BSNT_05945___ 464 ATTTCTACTTCAGTGTCCGTTTTTACGCCGGAAGATTTTACGAGC-CGGA 512
||||.||.||||||||||||||||.|..||||||.|.|||.| || |||.
RBAM_036050__ 464 ATTTTTATTTCAGTGTCCGTTTTTTCATCGGAAGGTATTATG-GCGCGGG 512
BSNT_05945___ 513 TGAGTGTCTGCGAAAACATTACACTC---GTGAACAGGCGTATT-TCCTG 558
.||..|||||||....||||| || |.||||||...|||| ||...
RBAM_036050__ 513 AGAACGTCTGCGCCTTCATTA---TCGGAGAGAACAGCAATATTGTCAGA 559
BSNT_05945___ 559 TTTGCTGAAAAACGG------CTGCCTCAGGTGCAG-AGTGTGACCTTTG 601
||.|| ||| ||.||.|||.|| || |...|||||...|
RBAM_036050__ 560 TTGGC-------CGGCGTTATCTCCCGCAGCTG-AGCACGCTGACCGCGG 601
BSNT_05945___ 602 AGATGATCTTTCCTTTTCTATTAT-----TAGAAA-CAGAAAAAGAAAAA 645
|.|.|.|.||||| ..|.||..| .||||| ||| ||||||.
RBAM_036050__ 602 AAACGGTATTTCC--GGCCATGCTCACGGAAGAAAGCAG----AGAAAAG 645
BSNT_05945___ 646 CTGGAAACGCTGCTCTC-TGAAGAAGCTGAGCTTTTATTT--GGAAGTGA 692
||...|.|..|||| || |||||||||.|.|||..|.||| |.|| ||
RBAM_036050__ 646 CTCTCAGCCTTGCT-TCATGAAGAAGCGGTGCTGCTGTTTCAGAAA--GA 692
BSNT_05945___ 693 AGCTGAGCTAAGGAAGACCATTAAG-CTGTTTATTGAAAACAACTCAAAC 741
|.|.|||||.|.|.|.||.|||.|| || |||||||||.|.|||||.|||
RBAM_036050__ 693 ACCGGAGCTGAAGCATACGATTCAGACT-TTTATTGAACATAACTCGAAC 741
BSNT_05945___ 742 --GTCACATTAACAGCGAAAAAGCTGCATCTGCATCGCAACAGCCTGCAA 789
|||.| |.|||.||||||..||||||.||||.||||||||.||.|||
RBAM_036050__ 742 ATGTCGC--TCACATCGAAAAGACTGCATTTGCACCGCAACAGTCTTCAA 789
BSNT_05945___ 790 TATCGGATTGATAAATTTATTGAGCGGTCAGGGATAGATAT-----CAAA 834
||||||||||||||||||...||.||.||.||.||.||||| ||.|
RBAM_036050__ 790 TATCGGATTGATAAATTTGCGGAACGCTCGGGTATTGATATTAAGACATA 839
BSNT_05945___ 835 TCGTACAAAGGCGCGCTTCTTGCCTATTTTATCTGCCTGCAAAATGAAAG 884
||| .|||||.||.||.||.|||||.||.||.|||||..||||||.
RBAM_036050__ 840 TCG-----GGGCGCCCTGCTGGCTTATTTCATTTGTCTGCAGTATGAAAA 884
BSNT_05945___ 885 TTCAGAATAA 894
.|||.|.|||
RBAM_036050__ 885 ATCACATTAA 894
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