Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05943 and RBAM_036040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:27
# Commandline: needle
# -asequence dna-align/BSNT_05943___msmX.1.9828.seq
# -bsequence dna-align/RBAM_036040___msmX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05943___msmX-RBAM_036040___msmX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05943___msmX-RBAM_036040___msmX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05943___msmX
# 2: RBAM_036040___msmX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity: 874/1106 (79.0%)
# Similarity: 874/1106 (79.0%)
# Gaps: 13/1106 ( 1.2%)
# Score: 3430.5
#
#
#=======================================
BSNT_05943___ 1 ATGGCTGAATTGCGGATGGAGCACATTTATAAATTTTATGATCAGAAGGA 50
|||||.|||.|.|||.|||||||.||||||||.|.|||.|||||.||.||
RBAM_036040__ 1 ATGGCGGAACTTCGGCTGGAGCATATTTATAAGTATTACGATCAAAAAGA 50
BSNT_05943___ 51 ACCGGCGGTTGATGACTTTAACCTTCATATTGCCGATAAGGAATTTATCG 100
|.||||.||.|||||.|||||||||||||||...|||||.||.|||||.|
RBAM_036040__ 51 AGCGGCTGTCGATGATTTTAACCTTCATATTAAAGATAAAGAGTTTATTG 100
BSNT_05943___ 101 TATTCGTCGGCCCGTCCGGCTGCGGGAAATCAACGACGCTGCGAATGGTC 150
|.||.|||||.|||||.||.|||||.||.||.||.||..||||.|||||.
RBAM_036040__ 101 TGTTTGTCGGTCCGTCGGGGTGCGGCAAGTCGACAACATTGCGGATGGTT 150
BSNT_05943___ 151 GCAGGACTTGAAGAAATTTCGAAAGGCGATTTTTATAT---TGA-AGGAA 196
||.||.||.|||||.|||.|||..||||||||.||||| ||| |.||
RBAM_036040__ 151 GCCGGGCTGGAAGACATTACGAGGGGCGATTTCTATATCGGTGACACGA- 199
BSNT_05943___ 197 AACGGGTCAATGATGTAGCGCCAAAGGACAGGGATATCGCGATGGTATTT 246
|.||.|||||..|.||.||.||.||||||||||||||.|||||.|||
RBAM_036040__ 200 ---GAGTGAATGACATCGCTCCTAAAGACAGGGATATCGCCATGGTGTTT 246
BSNT_05943___ 247 CAGAACTACGCGCTCTATCCGCATATGACGGTCTACGATAATATCGCGTT 296
||.|||||.|||.|.||||||||.|||||||||||.|||||||||||.||
RBAM_036040__ 247 CAAAACTATGCGTTATATCCGCACATGACGGTCTATGATAATATCGCTTT 296
BSNT_05943___ 297 CGGGCTCAAGCTTCGGAAAATGCCGAAGCCTGAAATCAAAAAAAGAGTAG 346
|||.||.|||||..||||.||||||||.|||||.||.||||||.|.||.|
RBAM_036040__ 297 CGGTCTGAAGCTGAGGAAGATGCCGAAACCTGAGATAAAAAAACGGGTCG 346
BSNT_05943___ 347 AGGAAGCTGCTAAAATTCTCGGGCTGGAGGAATATTTGCACCGTAAACCG 396
|.|||||.||.|||||.||.|||||....||.|||.|||||||.||||||
RBAM_036040__ 347 AAGAAGCGGCGAAAATGCTGGGGCTCACAGAGTATCTGCACCGCAAACCG 396
BSNT_05943___ 397 AAAGCGCTGTCAGGCGGACAGAGACAGCGGGTTGCGCTGGGCCGGGCAAT 446
||.|||||.||.|||||.|||.|.|||||||||||..|.||||||||.||
RBAM_036040__ 397 AAGGCGCTCTCCGGCGGGCAGCGGCAGCGGGTTGCATTAGGCCGGGCGAT 446
BSNT_05943___ 447 CGTGCGGGATGCAAAGGTGTTCCTGATGGATGAGCCTTTGTCAAACCTGG 496
.||..||||.||.||.|||||.||.|||||||||||..|||||||.||||
RBAM_036040__ 447 TGTCAGGGACGCCAAAGTGTTTCTAATGGATGAGCCGCTGTCAAATCTGG 496
BSNT_05943___ 497 ACGCGAAGCTGAGGGTGCAAATGCGGGCGGAAATCATTAAGCTCCACCAG 546
||||.|||||..|||||||.||||||||.|||||.||||||||.||.||.
RBAM_036040__ 497 ACGCAAAGCTTCGGGTGCAGATGCGGGCAGAAATTATTAAGCTGCATCAA 546
BSNT_05943___ 547 AGACTGCAGACTACAACGATTTATGTGACGCATGACCAGACAGAAGCGCT 596
||.|||||.||.||.||.||.|||||||||||.|||||.||||||||.||
RBAM_036040__ 547 AGGCTGCAAACAACCACAATCTATGTGACGCACGACCAAACAGAAGCACT 596
BSNT_05943___ 597 GACAATGGCGACACGGATTGTAGTCATGAAAGATGGGAAAATTCAGCAGA 646
|||.|||||||||||.||.||.||||||||.||.||.|||||||||||||
RBAM_036040__ 597 GACGATGGCGACACGCATCGTCGTCATGAAGGACGGAAAAATTCAGCAGA 646
BSNT_05943___ 647 TCGGGACGCCGAAGGATGTATATGAA-TTCCCTGAAAACGTCTTTGTCGG 695
||||.||||||||.||.||.|||||| .|||| ||||||||.||||||||
RBAM_036040__ 647 TCGGCACGCCGAAAGACGTGTATGAACATCCC-GAAAACGTATTTGTCGG 695
BSNT_05943___ 696 CGGGTTTATCGGATCACCAGCGATGAACTTTTTCAAAGGGAAGCTCACGG 745
||||||||||||.||.|||||||||||||||||||||||.|||||.||||
RBAM_036040__ 696 CGGGTTTATCGGCTCCCCAGCGATGAACTTTTTCAAAGGAAAGCTGACGG 745
BSNT_05943___ 746 ATGGCTTAATCAAAATCGGTTCTGCGGCATTAACCGTCCCGGAAGGAAAA 795
|.|||...||..|.||||||||.||.||..|.|.|||.||||||||.|||
RBAM_036040__ 746 ACGGCGCCATTCAGATCGGTTCAGCCGCTCTCAGCGTGCCGGAAGGGAAA 795
BSNT_05943___ 796 ATGAAAGTGCTGCGTGAAAAAGGCTACATCGGCAAAGAGGTCATCTTCGG 845
||||||.||||.||.||||||||.||...|||||||||.||.|||||.||
RBAM_036040__ 796 ATGAAAATGCTCCGGGAAAAAGGGTATGCCGGCAAAGATGTTATCTTTGG 845
BSNT_05943___ 846 CATCCGTCCTGAGGATATACATGATGAATTGATTGTCGTGGAATCATATA 895
||||||.||.||.||.|||||||||||..|||||||.||.|||||.||||
RBAM_036040__ 846 CATCCGCCCGGAAGACATACATGATGAGCTGATTGTGGTAGAATCCTATA 895
BSNT_05943___ 896 AGAACTCTTCGATTAAGGCCAAAATCAATGTTGCAGAGCTGCTCGGTTCT 945
||||.||.||.||.|..||.|||||||||||.||.||..|||||||.||.
RBAM_036040__ 896 AGAATTCATCCATCACAGCTAAAATCAATGTCGCGGAATTGCTCGGGTCA 945
BSNT_05943___ 946 GAAATCATGATTTATTCGCAGATCGACAACCAAGACTTTATTGCGCGGAT 995
|||||.|||.|||||||.|.|||||...|.||.||.|||||.||.|||||
RBAM_036040__ 946 GAAATTATGGTTTATTCCCGGATCGGGGATCAGGATTTTATCGCCCGGAT 995
BSNT_05943___ 996 CGACGCCCGCCTCGATATTCAATCGGGCGATGAGCTGACGGTCGCATTTG 1045
.||||||||||..||.||||...|.||.||.||..||||.|||||.||.|
RBAM_036040__ 996 TGACGCCCGCCATGACATTCGTGCCGGTGAGGAATTGACCGTCGCTTTCG 1045
BSNT_05943___ 1046 ATATGAATAAAGGTCATTTCTTTGACAGTGAGACAGAAGTGAGAATCCG- 1094
|.||||||||||.|||.||.|||||||||||.||||||.|.||||||||
RBAM_036040__ 1046 ACATGAATAAAGCTCACTTTTTTGACAGTGAAACAGAAATCAGAATCCGC 1095
BSNT_05943___ 1095 --ATAA 1098
||||
RBAM_036040__ 1096 TCATAA 1101
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