Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05943 and RBAM_036040

See Amino acid alignment / Visit BSNT_05943 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:27
# Commandline: needle
#    -asequence dna-align/BSNT_05943___msmX.1.9828.seq
#    -bsequence dna-align/RBAM_036040___msmX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05943___msmX-RBAM_036040___msmX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05943___msmX-RBAM_036040___msmX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05943___msmX
# 2: RBAM_036040___msmX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity:     874/1106 (79.0%)
# Similarity:   874/1106 (79.0%)
# Gaps:          13/1106 ( 1.2%)
# Score: 3430.5
# 
#
#=======================================

BSNT_05943___      1 ATGGCTGAATTGCGGATGGAGCACATTTATAAATTTTATGATCAGAAGGA     50
                     |||||.|||.|.|||.|||||||.||||||||.|.|||.|||||.||.||
RBAM_036040__      1 ATGGCGGAACTTCGGCTGGAGCATATTTATAAGTATTACGATCAAAAAGA     50

BSNT_05943___     51 ACCGGCGGTTGATGACTTTAACCTTCATATTGCCGATAAGGAATTTATCG    100
                     |.||||.||.|||||.|||||||||||||||...|||||.||.|||||.|
RBAM_036040__     51 AGCGGCTGTCGATGATTTTAACCTTCATATTAAAGATAAAGAGTTTATTG    100

BSNT_05943___    101 TATTCGTCGGCCCGTCCGGCTGCGGGAAATCAACGACGCTGCGAATGGTC    150
                     |.||.|||||.|||||.||.|||||.||.||.||.||..||||.|||||.
RBAM_036040__    101 TGTTTGTCGGTCCGTCGGGGTGCGGCAAGTCGACAACATTGCGGATGGTT    150

BSNT_05943___    151 GCAGGACTTGAAGAAATTTCGAAAGGCGATTTTTATAT---TGA-AGGAA    196
                     ||.||.||.|||||.|||.|||..||||||||.|||||   ||| |.|| 
RBAM_036040__    151 GCCGGGCTGGAAGACATTACGAGGGGCGATTTCTATATCGGTGACACGA-    199

BSNT_05943___    197 AACGGGTCAATGATGTAGCGCCAAAGGACAGGGATATCGCGATGGTATTT    246
                        |.||.|||||..|.||.||.||.||||||||||||||.|||||.|||
RBAM_036040__    200 ---GAGTGAATGACATCGCTCCTAAAGACAGGGATATCGCCATGGTGTTT    246

BSNT_05943___    247 CAGAACTACGCGCTCTATCCGCATATGACGGTCTACGATAATATCGCGTT    296
                     ||.|||||.|||.|.||||||||.|||||||||||.|||||||||||.||
RBAM_036040__    247 CAAAACTATGCGTTATATCCGCACATGACGGTCTATGATAATATCGCTTT    296

BSNT_05943___    297 CGGGCTCAAGCTTCGGAAAATGCCGAAGCCTGAAATCAAAAAAAGAGTAG    346
                     |||.||.|||||..||||.||||||||.|||||.||.||||||.|.||.|
RBAM_036040__    297 CGGTCTGAAGCTGAGGAAGATGCCGAAACCTGAGATAAAAAAACGGGTCG    346

BSNT_05943___    347 AGGAAGCTGCTAAAATTCTCGGGCTGGAGGAATATTTGCACCGTAAACCG    396
                     |.|||||.||.|||||.||.|||||....||.|||.|||||||.||||||
RBAM_036040__    347 AAGAAGCGGCGAAAATGCTGGGGCTCACAGAGTATCTGCACCGCAAACCG    396

BSNT_05943___    397 AAAGCGCTGTCAGGCGGACAGAGACAGCGGGTTGCGCTGGGCCGGGCAAT    446
                     ||.|||||.||.|||||.|||.|.|||||||||||..|.||||||||.||
RBAM_036040__    397 AAGGCGCTCTCCGGCGGGCAGCGGCAGCGGGTTGCATTAGGCCGGGCGAT    446

BSNT_05943___    447 CGTGCGGGATGCAAAGGTGTTCCTGATGGATGAGCCTTTGTCAAACCTGG    496
                     .||..||||.||.||.|||||.||.|||||||||||..|||||||.||||
RBAM_036040__    447 TGTCAGGGACGCCAAAGTGTTTCTAATGGATGAGCCGCTGTCAAATCTGG    496

BSNT_05943___    497 ACGCGAAGCTGAGGGTGCAAATGCGGGCGGAAATCATTAAGCTCCACCAG    546
                     ||||.|||||..|||||||.||||||||.|||||.||||||||.||.||.
RBAM_036040__    497 ACGCAAAGCTTCGGGTGCAGATGCGGGCAGAAATTATTAAGCTGCATCAA    546

BSNT_05943___    547 AGACTGCAGACTACAACGATTTATGTGACGCATGACCAGACAGAAGCGCT    596
                     ||.|||||.||.||.||.||.|||||||||||.|||||.||||||||.||
RBAM_036040__    547 AGGCTGCAAACAACCACAATCTATGTGACGCACGACCAAACAGAAGCACT    596

BSNT_05943___    597 GACAATGGCGACACGGATTGTAGTCATGAAAGATGGGAAAATTCAGCAGA    646
                     |||.|||||||||||.||.||.||||||||.||.||.|||||||||||||
RBAM_036040__    597 GACGATGGCGACACGCATCGTCGTCATGAAGGACGGAAAAATTCAGCAGA    646

BSNT_05943___    647 TCGGGACGCCGAAGGATGTATATGAA-TTCCCTGAAAACGTCTTTGTCGG    695
                     ||||.||||||||.||.||.|||||| .|||| ||||||||.||||||||
RBAM_036040__    647 TCGGCACGCCGAAAGACGTGTATGAACATCCC-GAAAACGTATTTGTCGG    695

BSNT_05943___    696 CGGGTTTATCGGATCACCAGCGATGAACTTTTTCAAAGGGAAGCTCACGG    745
                     ||||||||||||.||.|||||||||||||||||||||||.|||||.||||
RBAM_036040__    696 CGGGTTTATCGGCTCCCCAGCGATGAACTTTTTCAAAGGAAAGCTGACGG    745

BSNT_05943___    746 ATGGCTTAATCAAAATCGGTTCTGCGGCATTAACCGTCCCGGAAGGAAAA    795
                     |.|||...||..|.||||||||.||.||..|.|.|||.||||||||.|||
RBAM_036040__    746 ACGGCGCCATTCAGATCGGTTCAGCCGCTCTCAGCGTGCCGGAAGGGAAA    795

BSNT_05943___    796 ATGAAAGTGCTGCGTGAAAAAGGCTACATCGGCAAAGAGGTCATCTTCGG    845
                     ||||||.||||.||.||||||||.||...|||||||||.||.|||||.||
RBAM_036040__    796 ATGAAAATGCTCCGGGAAAAAGGGTATGCCGGCAAAGATGTTATCTTTGG    845

BSNT_05943___    846 CATCCGTCCTGAGGATATACATGATGAATTGATTGTCGTGGAATCATATA    895
                     ||||||.||.||.||.|||||||||||..|||||||.||.|||||.||||
RBAM_036040__    846 CATCCGCCCGGAAGACATACATGATGAGCTGATTGTGGTAGAATCCTATA    895

BSNT_05943___    896 AGAACTCTTCGATTAAGGCCAAAATCAATGTTGCAGAGCTGCTCGGTTCT    945
                     ||||.||.||.||.|..||.|||||||||||.||.||..|||||||.||.
RBAM_036040__    896 AGAATTCATCCATCACAGCTAAAATCAATGTCGCGGAATTGCTCGGGTCA    945

BSNT_05943___    946 GAAATCATGATTTATTCGCAGATCGACAACCAAGACTTTATTGCGCGGAT    995
                     |||||.|||.|||||||.|.|||||...|.||.||.|||||.||.|||||
RBAM_036040__    946 GAAATTATGGTTTATTCCCGGATCGGGGATCAGGATTTTATCGCCCGGAT    995

BSNT_05943___    996 CGACGCCCGCCTCGATATTCAATCGGGCGATGAGCTGACGGTCGCATTTG   1045
                     .||||||||||..||.||||...|.||.||.||..||||.|||||.||.|
RBAM_036040__    996 TGACGCCCGCCATGACATTCGTGCCGGTGAGGAATTGACCGTCGCTTTCG   1045

BSNT_05943___   1046 ATATGAATAAAGGTCATTTCTTTGACAGTGAGACAGAAGTGAGAATCCG-   1094
                     |.||||||||||.|||.||.|||||||||||.||||||.|.|||||||| 
RBAM_036040__   1046 ACATGAATAAAGCTCACTTTTTTGACAGTGAAACAGAAATCAGAATCCGC   1095

BSNT_05943___   1095 --ATAA   1098
                       ||||
RBAM_036040__   1096 TCATAA   1101


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