Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05940 and RBAM_036030

See Amino acid alignment / Visit BSNT_05940 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:27
# Commandline: needle
#    -asequence dna-align/BSNT_05940___yxkH.1.9828.seq
#    -bsequence dna-align/RBAM_036030___yxkH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05940___yxkH-RBAM_036030___yxkH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05940___yxkH-RBAM_036030___yxkH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05940___yxkH
# 2: RBAM_036030___yxkH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 876
# Identity:     611/876 (69.7%)
# Similarity:   611/876 (69.7%)
# Gaps:          69/876 ( 7.9%)
# Score: 2037.0
# 
#
#=======================================

BSNT_05940___      1 ATGAAACGATTGTTTTTAAGCATCTTTCTTTTGGGCAGC--TGTTTGGCT     48
                     ||||||||..||.|..|..||||.|..||||| |||.||  ||||| .|.
RBAM_036030__      1 ATGAAACGCATGATCATGTGCATGTGCCTTTT-GGCTGCCGTGTTT-ACG     48

BSNT_05940___     49 CTTGCGGCTTGCGCTGATCAAGAGG-------CGAATGCAGAGCA-GCCG     90
                     |||||.||.|||.|.|..||.||||       ||||  ||.|||| .|||
RBAM_036030__     49 CTTGCCGCCTGCTCGGGCCATGAGGCAAGCGCCGAA--CAAAGCATTCCG     96

BSNT_05940___     91 ATGCCAAAAGCGGAACAAAAGAAACCGGAAAAAAAGGCAGTA------CA    134
                     |.|.||.|||||.|.||         .||.||||||.|.|||      ||
RBAM_036030__     97 AAGGCAGAAGCGCACCA---------CGATAAAAAGTCTGTAAAGCGCCA    137

BSNT_05940___    135 AGTTCAGAAAAAAGAAGAC-GATACATCCGCAT-GGATCAAAACAGAGAA    182
                     |.|   .||||||| ||.| |||||.|||||.| ||.|||||..|.||.|
RBAM_036030__    138 AAT---CAAAAAAG-AGCCGGATACGTCCGCCTGGGTTCAAACGAAAGGA    183

BSNT_05940___    183 ACCGGCAAAGCTGCCGATTTTGATGTACCACAGCATTTCTTCAGGAAACA    232
                     | ||||||..|||||||||.||||||||||||||||||||...|||||||
RBAM_036030__    184 A-CGGCAAGACTGCCGATTCTGATGTACCACAGCATTTCTGAGGGAAACA    232

BSNT_05940___    233 GCCTCCGTGTGCCAAAGAAAGAATTCGAGGC-GCATATGAAGTGGCTTCA    281
                     ||||.||||||||.|||.|||||||| .||| ||||||||||||||||||
RBAM_036030__    233 GCCTGCGTGTGCCGAAGGAAGAATTC-CGGCAGCATATGAAGTGGCTTCA    281

BSNT_05940___    282 TGATAACGGCTATCAGACATTAACGCCGAAAGAGGCATATCTCATGCTGA    331
                     ||||.||||||||.|.||..|.||.||..|||||||.|||||.|||||||
RBAM_036030__    282 TGATCACGGCTATTATACGATGACTCCTGAAGAGGCCTATCTGATGCTGA    331

BSNT_05940___    332 CGCAGGATAAAAAACCGAGTGAGAAGTGCGTGCTGATCACATTTGATGAC    381
                     ||.|||||||..|.|||.||||.||.||.||.||||||||||||||||||
RBAM_036030__    332 CGGAGGATAAGGAGCCGCGTGAAAAATGTGTTCTGATCACATTTGATGAC    381

BSNT_05940___    382 GGGTACACCGACAATTATCAAGATGCGTATCCGGTGCTGAAAAAGTACGG    431
                     ||.||.|||||||||....|||..||.|||||..|..|.||.||.|||..
RBAM_036030__    382 GGCTATACCGACAATGTGAAAGCGGCCTATCCCATTTTAAAGAAATACAA    431

BSNT_05940___    432 GATGAAGGCAACGATTTTTATGATCGGCAAATCGATCGGACATAGGCACC    481
                     ||||||.||.||.||.|||||||||||.||.|..|||||.||||.|.|.|
RBAM_036030__    432 GATGAAAGCGACAATCTTTATGATCGGAAACTATATCGGGCATAAGAATC    481

BSNT_05940___    482 ATCTGACAGAGGACCAAATGAAGGAAATGGCACAGCACGGCATATCGATT    531
                     |||||||.|||.|.||.||||||||.|||||....||||||||.||.|||
RBAM_036030__    482 ATCTGACTGAGAAGCAGATGAAGGAGATGGCCGCCCACGGCATTTCCATT    531

BSNT_05940___    532 GAAAGCCATACGATTGACCACGTTGAGCTGAACGGATTAACGCCTCAACA    581
                     .|.|||||||||||..||||..|.||..||||.||..|.||.||.||.||
RBAM_036030__    532 CAGAGCCATACGATGAACCATCTCGAATTGAATGGGCTCACACCGCAGCA    581

BSNT_05940___    582 GCAGCAAAGCGAGATGGCTGATTCGAAAAAGC---TGTTCGACCACATGT    628
                     |||||.|.|.||.|||...||.||   .||||   |.||.||.||.||||
RBAM_036030__    582 GCAGCGACGTGAAATGAAGGACTC---TAAGCGTTTATTTGATCAAATGT    628

BSNT_05940___    629 TTCATCAGCAAACCACCATCATCAGCTATCCGGTAGGGCGCTACAATGAG    678
                     |....||||..||..|.||.||||||||.||.||.||.||.||.|||.||
RBAM_036030__    629 TCGGGCAGCGGACGTCTATGATCAGCTACCCTGTCGGACGATATAATAAG    678

BSNT_05940___    679 GAGACGCTGAAGGCCGCTGAAAAAA-------CAGGCTATCAAATGGGCG    721
                     ||.||..|.||.|||||       |       |||||||.|..||||..|
RBAM_036030__    679 GAAACATTAAAAGCCGC-------AGCCGCGTCAGGCTACCGTATGGCGG    721

BSNT_05940___    722 TGACGACAGAACCGGGCGCGGCTTCGAGAGACCAGGGAATGTATGCCCTC    771
                     |.|||||.||.|||||.|||||.||.|||||.|||||..|.||.|..||.
RBAM_036030__    722 TTACGACGGAGCCGGGAGCGGCGTCAAGAGATCAGGGGCTTTACGGGCTT    771

BSNT_05940___    772 CATCGTGTGCGCGTGTCCCCAGGCATGTCGGGCTCGGCTTTTGGTGCGTA    821
                     ||.||.||.||.|||||.||.||||||||.|||.||||.||.||..|.||
RBAM_036030__    772 CACCGCGTCCGTGTGTCGCCGGGCATGTCCGGCGCGGCATTCGGCTCTTA    821

BSNT_05940___    822 CATCGAATCA-------ATGAAATAA    840
                     .||    |||       |||||||||
RBAM_036030__    822 TAT----TCAAAATGTGATGAAATAA    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05940 and RBAM_036030

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
