Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05930 and RBAM_035990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:26
# Commandline: needle
# -asequence dna-align/BSNT_05930___cydC.1.9828.seq
# -bsequence dna-align/RBAM_035990___cydC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05930___cydC-RBAM_035990___cydC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05930___cydC-RBAM_035990___cydC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05930___cydC
# 2: RBAM_035990___cydC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1717
# Identity: 1349/1717 (78.6%)
# Similarity: 1349/1717 (78.6%)
# Gaps: 26/1717 ( 1.5%)
# Score: 5221.5
#
#
#=======================================
BSNT_05930___ 1 ATGGGAAAAGACCTGTTTCGATATAAAGGAATGAAGCGGATTCTCACCTT 50
|||||||||||||||||||..|||||||||||||||||||||||..|..|
RBAM_035990__ 1 ATGGGAAAAGACCTGTTTCTTTATAAAGGAATGAAGCGGATTCTTGCGAT 50
BSNT_05930___ 51 GATTACTTGTTTAACGCTGATTCAGACAGCCGCCATTATTATGCAGGCAG 100
.|||||..|.||||||.|.||.||.||.||||||||.||..|||||||.|
RBAM_035990__ 51 CATTACGGGATTAACGATTATACAAACGGCCGCCATCATCTTGCAGGCGG 100
BSNT_05930___ 101 AGTGGCTGAGTGAGGCCTTAACCGGACTGTTCAACGGGAAGGGCATTACC 150
|.||||||||..||||..||||||||.|.||.|||||||||.|.|||.|.
RBAM_035990__ 101 AATGGCTGAGCCAGGCGGTAACCGGATTATTTAACGGGAAGCGGATTGCT 150
BSNT_05930___ 151 TCCCTTTTTCCGGTGATCAGCTTTTTCCTCATCGCTTTTATCGCCCGGCA 200
||.||||.||||||.|||.||||||||||..|.||.|||.|.|.||||||
RBAM_035990__ 151 TCTCTTTATCCGGTTATCGGCTTTTTCCTGCTTGCGTTTTTGGTCCGGCA 200
BSNT_05930___ 201 CGGGGTGACGGTGGCGCGACAGAAAATCGTCTATCAATACGCCGCCCGGA 250
.|.||||||...||..||.|||||||||||.||.|||||.|||||.|..|
RBAM_035990__ 201 TGCGGTGACAACGGTCCGGCAGAAAATCGTGTACCAATATGCCGCGCAAA 250
BSNT_05930___ 251 CAGGAGCAGATTTGAGGAAAAGTTTTCTTGATCAGCTGTTCCGATTAGGC 300
|.||.|||||.||.||.|||||.||||||||.||..|||||||..|.|||
RBAM_035990__ 251 CCGGCGCAGACTTAAGAAAAAGATTTCTTGAGCAATTGTTCCGTCTCGGC 300
BSNT_05930___ 301 CCCCGCTTTGCAAAGAAAGAAGGGACGGGGCAAATGGTGACGCTGGCGAT 350
|||||||||||.||.|||||.|||||.||.|..|||||||||||||||||
RBAM_035990__ 301 CCCCGCTTTGCGAAAAAAGAGGGGACAGGCCGGATGGTGACGCTGGCGAT 350
BSNT_05930___ 351 GGAAGGCATCAGCCAGTTCCGCCGCTACCTGGAGCTGTTTCTGCCGAAAA 400
||||||||||||||||||||||||.||..|.|||||||||||||||||||
RBAM_035990__ 351 GGAAGGCATCAGCCAGTTCCGCCGTTATTTAGAGCTGTTTCTGCCGAAAA 400
BSNT_05930___ 401 TGGTCAGCATGGCGATTGTGCCTGCGGCAGTTGTCATTTATGTGTTTTTT 450
||||||||||||||||||||||.||.||.|||||.|||||.|||||||||
RBAM_035990__ 401 TGGTCAGCATGGCGATTGTGCCGGCTGCCGTTGTTATTTACGTGTTTTTT 450
BSNT_05930___ 451 CAGGATCGGACATCAGCCATCATT-TTAGTCGCTGCTATGCCGATTCTGA 499
||||||...|||||.||..|.||| |.|.|| .|||..|.||||||.|||
RBAM_035990__ 451 CAGGATAAAACATCGGCTTTGATTCTGATTC-TTGCGCTTCCGATTTTGA 499
BSNT_05930___ 500 TCATCTTTATGATTCTTCTCGGCCTTGTCGCGCAGAGAAAAGCGGATCGT 549
|..|.|||||||||||.|||||.|||||.||.||||.||||||.|||||.
RBAM_035990__ 500 TTGTATTTATGATTCTGCTCGGACTTGTGGCACAGAAAAAAGCCGATCGC 549
BSNT_05930___ 550 CAGTGGAAATCCTATCAGAGACTTTCCAATCATTTTGTTGATTCTCTTCG 599
||.|||||.||||||||||..||||||||||||||.||.|||||.||.||
RBAM_035990__ 550 CAATGGAAGTCCTATCAGACGCTTTCCAATCATTTCGTGGATTCGCTCCG 599
BSNT_05930___ 600 CGGGCTGGAGACATTGCGTTTCCTAGGTTTGAGCAAGTCACACAGCAAAA 649
|||.||||||||||||||.||..||||.||.|||||.||||||||.||||
RBAM_035990__ 600 CGGACTGGAGACATTGCGGTTTTTAGGATTAAGCAAATCACACAGTAAAA 649
BSNT_05930___ 650 ATAT-TTTCTATGTGAGTGAGCGGTATCGCAAGGCAACGATGAGCACACT 698
|||| |||| ||||.||||||.|.||.||||||||.|||||||||||.||
RBAM_035990__ 650 ATATCTTTC-ATGTCAGTGAGAGATACCGCAAGGCGACGATGAGCACGCT 698
BSNT_05930___ 699 CCGGGTAGCGTTTTTGTCATCATTCGCCCTCGATTTTTTCACGATGCTGT 748
||||||.||||||||.||||||||||||||.|||||.||.||||||||||
RBAM_035990__ 699 CCGGGTCGCGTTTTTATCATCATTCGCCCTGGATTTCTTTACGATGCTGT 748
BSNT_05930___ 749 CGGTGGCGACAGTCGCAGTATTTCTGGGCCTGCGTCTCATTGACGGCGAT 798
|||||||||||||.||.||.|||||.|||.||||.||.||.|||||..|.
RBAM_035990__ 749 CGGTGGCGACAGTGGCGGTGTTTCTCGGCTTGCGGCTGATAGACGGACAA 798
BSNT_05930___ 799 ATTTTGCTTGGCCCCGCTTTAACGGCGCTTATTCTGGCGCCTGAGTATTT 848
|||.||||.||.||.||.||.||.|||||.|||||.||||||||.|||||
RBAM_035990__ 799 ATTCTGCTCGGACCGGCATTGACCGCGCTCATTCTCGCGCCTGAATATTT 848
BSNT_05930___ 849 TTTGCCGGTGCGGGAAGTGGGGAATGATTATCATGCAACGCTGAACGGCC 898
|.|.|||||.||.|||||||||||||||||.||.||.|||.|.|||||.|
RBAM_035990__ 849 TCTCCCGGTCCGCGAAGTGGGGAATGATTACCACGCGACGTTAAACGGGC 898
BSNT_05930___ 899 AGGAAGCAGGAAAAACCATTCAAGAGATTTTGTCGCAGCCTGGTTTTAAA 948
||||.||.||.|||||||||||||.|||||||.|||||||.|||||||||
RBAM_035990__ 899 AGGAGGCGGGGAAAACCATTCAAGCGATTTTGGCGCAGCCCGGTTTTAAA 948
BSNT_05930___ 949 GAAGAGACGCCGCTTCAGCTCGAGGATTGGTCCGATCAGGATGAGCTGAA 998
|||||.|.||||||..|.||.||....|||.|.||...||||||..|..|
RBAM_035990__ 949 GAAGAAAAGCCGCTCGAACTTGATACGTGGACTGACGGGGATGAATTACA 998
BSNT_05930___ 999 GCTGTCAGGCG--TGTCAGTCGGCCGTTCGGTGTCTGATATTCATCTCTC 1046
|| |.|.||| ||||.|||.|....|||.|||||||..|||||||.||
RBAM_035990__ 999 GC--TTACGCGTTTGTCCGTCCGAGAATCGATGTCTGAATTTCATCTGTC 1046
BSNT_05930___ 1047 ATTCAAAGGCAAGAAAAAAATCGGCATTATCGGTGCAAGCGGCGCCGGAA 1096
.||||||||.|||||.||||||||.||||||||.|.||||||.||.||||
RBAM_035990__ 1047 CTTCAAAGGGAAGAAGAAAATCGGGATTATCGGGGAAAGCGGTGCGGGAA 1096
BSNT_05930___ 1097 AATCAACATTAATTGATATTCTCGGCGGATTTTTAGAGCCGGATGGCGG- 1145
||||.|||.|.||||||.|.||.|||||.|||||||||||.|....|||
RBAM_035990__ 1097 AATCGACACTCATTGATGTGCTGGGCGGCTTTTTAGAGCCTGCGTCCGGT 1146
BSNT_05930___ 1146 GATGATTGAGGTTAATGGTACAAGCCGGTCCCATTTGCA---GGACGGCA 1192
|| |||..||||.||.|||..|..|||.||.|||.|||| |||||
RBAM_035990__ 1147 GA-GATCAAGGTAAACGGTGAATCCCGCTCACATCTGCAGTCGGACG--- 1192
BSNT_05930___ 1193 GCTGGCAGAAAAACCTTCTGTACATCCCTCAGCATCCGTACATTTTTGAT 1242
||||||||||..|.||.||.||.||.||.|||||.|||||||||||||||
RBAM_035990__ 1193 GCTGGCAGAAGCAGCTGCTTTATATTCCGCAGCACCCGTACATTTTTGAT 1242
BSNT_05930___ 1243 GATACGCTTGGCAATAACATTCGCTTCTACCACCCAAGCGCTTCGGCAGA 1292
||.||||||...|||||.||.||.||.||.||.||....||||||...||
RBAM_035990__ 1243 GACACGCTTTTGAATAATATCCGGTTTTATCATCCTGATGCTTCGCGTGA 1292
BSNT_05930___ 1293 GGATACAGCCCGTGCTGCTGCGGCGGCGGGAC-TGGCGGAGCTG----GT 1337
|||.||.||.|..||.|||....|||||||.| |..|||| ||| ||
RBAM_035990__ 1293 GGAAACGGCGCAGGCCGCTAGATCGGCGGGTCTTTCCGGA-CTGATCCGT 1341
BSNT_05930___ 1338 GGATAGCCTTCCTGAAGGATTAGAGGGGCGGATCGGGGAAGGCGGCCGGG 1387
||| ||.||.|..||..|.||.||.||||||||.||.|||||.||||
RBAM_035990__ 1342 -GAT---CTGCCCGGCGGTCTTGACGGCCGGATCGGCGAGGGCGGACGGG 1387
BSNT_05930___ 1388 CGCTCAGCGGCGGCCAGGCACAGCGTGTCGCGCTGGCCCGCGCCTTTTTG 1437
||||||||||.||.|||||.||||||||||||||||||.|.||||||||.
RBAM_035990__ 1388 CGCTCAGCGGAGGGCAGGCTCAGCGTGTCGCGCTGGCCAGAGCCTTTTTA 1437
BSNT_05930___ 1438 GGAAACCGTCCGATCCTGCTGCTGGATGAGCCGACCGCCCATCTTGATAT 1487
||||||||.|||||.||.||..||||||||||||||||.||.||||||||
RBAM_035990__ 1438 GGAAACCGGCCGATTCTCCTTTTGGATGAGCCGACCGCTCACCTTGATAT 1487
BSNT_05930___ 1488 CGAAACTGAATATGAAATAAAAGAAACGATGCTGGATTTATTTGAGGATA 1537
.|||||.||||||||||||||||||||||||...||..|.|||||..|.|
RBAM_035990__ 1488 TGAAACAGAATATGAAATAAAAGAAACGATGAAAGACCTGTTTGAAAACA 1537
BSNT_05930___ 1538 AGCTCGTTTTTCTCGCGACTCACCGCCTTCACTGGATGCTCGATATGGAC 1587
|.||.||.|||||.||.||||||||.||||||||||||||.||.||||||
RBAM_035990__ 1538 AACTTGTCTTTCTGGCCACTCACCGTCTTCACTGGATGCTTGAGATGGAC 1587
BSNT_05930___ 1588 GAAATTATCGTGCTGGACGGGGGCAGGGTTGCGGAAGTCGGGACTCACAA 1637
||||||||||||||.||.|..|||..|||.||||||.||||.||.|||.|
RBAM_035990__ 1588 GAAATTATCGTGCTTGATGACGGCGCGGTGGCGGAAATCGGCACCCACGA 1637
BSNT_05930___ 1638 TGAACTGCTGGAGAAAAACGGTGTGTATACCAAACTCGTGAAGGCACAAC 1687
.|||.||.|||.||||.|.||.||.||..|||||||.||.|||||.||||
RBAM_035990__ 1638 CGAATTGATGGCGAAACAAGGCGTATACGCCAAACTTGTAAAGGCGCAAC 1687
BSNT_05930___ 1688 TGGGGGAAAGAGCATGA 1704
|||||||||||.|||||
RBAM_035990__ 1688 TGGGGGAAAGAACATGA 1704
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