Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05929 and RBAM_035980
See
Amino acid alignment /
Visit
BSNT_05929 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:26
# Commandline: needle
# -asequence dna-align/BSNT_05929___cydD.1.9828.seq
# -bsequence dna-align/RBAM_035980___cydD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05929___cydD-RBAM_035980___cydD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05929___cydD-RBAM_035980___cydD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05929___cydD
# 2: RBAM_035980___cydD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1775
# Identity: 1332/1775 (75.0%)
# Similarity: 1332/1775 (75.0%)
# Gaps: 91/1775 ( 5.1%)
# Score: 4921.5
#
#
#=======================================
BSNT_05929___ 1 ATGAAGAAAGAAGAATGGATTTTGCCGTATATCAAGCAAAATGCCCGCCT 50
||||..|||||||||||||||.||||||||||.||||||||||||||..|
RBAM_035980__ 1 ATGAGAAAAGAAGAATGGATTCTGCCGTATATGAAGCAAAATGCCCGTTT 50
BSNT_05929___ 51 GTTTGTTCTGGTTATCTTTTTGGGCGGGGTGACGATTTTTTCTGCTGCTT 100
|||||||||.||.||.|||||.||||.|||||||||||||||.||.||.|
RBAM_035980__ 51 GTTTGTTCTTGTGATTTTTTTAGGCGCGGTGACGATTTTTTCGGCGGCCT 100
BSNT_05929___ 101 TTCTCATGTTCACCTCAGGGTTTTTGATTTCTAAAGCGGCGACAAGGCCG 150
|||||||||||||.||.||.||||||||.|||||..|||||||.|||||.
RBAM_035980__ 101 TTCTCATGTTCACTTCCGGTTTTTTGATCTCTAAGTCGGCGACCAGGCCT 150
BSNT_05929___ 151 GAAAATATTCTGCTTATTTATGTGCCGATTGTCGCTGTGCGCACCTTTGG 200
||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||.||
RBAM_035980__ 151 GAGAATATCCTGCTGGTGTACGTTCCGATTGTAGCCGTGCGGACCTTCGG 200
BSNT_05929___ 201 GATTGCGCGCTCTGTTTCGCGATATGTGGAACGGCT--CGTCGGGCATCA 248
||||||.||.||.||.||.||.||.|..||.||.|| || |||||.||
RBAM_035980__ 201 GATTGCCCGTTCAGTCTCACGGTACGCCGAGCGTCTGACG--GGGCACCA 248
BSNT_05929___ 249 CATCATTTTGAAAATCGTATCCGACATGCGCGTCCGCCTTTACAATATGC 298
.||||||.||||||||||.|||||||||.|.||.||.|||||||||||||
RBAM_035980__ 249 TATCATTCTGAAAATCGTGTCCGACATGAGGGTGCGGCTTTACAATATGC 298
BSNT_05929___ 299 TTGAGCCGG--------GTGCTTTGATGCTGCGTTCCCGTTTTCGCACGG 340
|.||||||| .||||||.| |||||||||||.||||
RBAM_035980__ 299 TGGAGCCGGCCTCGCTCATGCTTTCA--------TCCCGTTTTCGGACGG 340
BSNT_05929___ 341 GGGATATGCTCGGCATTTTGTCTGAGGATATTGAGCATTTGCAGGATGCT 390
|.||.|||||||||||||||.||||||||||||||||||||||||||||.
RBAM_035980__ 341 GCGACATGCTCGGCATTTTGGCTGAGGATATTGAGCATTTGCAGGATGCG 390
BSNT_05929___ 391 TTCTTAAAAACGATTTTTCCTGCGATCTCAGCCTTGTTCCTGTATGCTGT 440
||.||||||||||||||.||||||.|.||.||.|||.|.||||||||.|.
RBAM_035980__ 391 TTTTTAAAAACGATTTTCCCTGCGGTTTCCGCTTTGCTTCTGTATGCGGC 440
BSNT_05929___ 441 GTCAGTGATAGCGCTTGGCTTCTTCTCTTGGCCGTTTGCCATATTGCTT- 489
.||.||.||.|..||.|||||.|..||.|||||||||||| ||||
RBAM_035980__ 441 ATCCGTTATCGGACTCGGCTTTTATTCCTGGCCGTTTGCC-----GCTTT 485
BSNT_05929___ 490 ----GCGCTTTATTTGTTTGTTCTTGTTGTATTGTTTCCGGTTGTGTCTT 535
|||.||||..|||||.|..|.||||||.||||||||||||||||..
RBAM_035980__ 486 TGCGGCGATTTACCTGTTTATATTGGTTGTAATGTTTCCGGTTGTGTCGC 535
BSNT_05929___ 536 TGCTCGTGACGAGAGCGAAGAATGCGAAGCTGAAAAGCGGGCGGAATGTG 585
|.||.||||||||||||||.||...||.||||||||||||.||||||..|
RBAM_035980__ 536 TTCTTGTGACGAGAGCGAAAAACATGAGGCTGAAAAGCGGCCGGAATACG 585
BSNT_05929___ 586 CTGTACAGCCGTCTGACAGATGCTGTGATGGGTGTCAGCGACTGGATGTT 635
||.||||||||.|||||||||||.|||.|.||.||.||||||||||||||
RBAM_035980__ 586 CTCTACAGCCGGCTGACAGATGCCGTGCTCGGCGTGAGCGACTGGATGTT 635
BSNT_05929___ 636 CAGCGGACGCC-GGCATGCTTTTATTGATGCTTATGAA---AAAGAGGAA 681
|...||||||| ||| .||.||||||....|||||||| ||||||
RBAM_035980__ 636 CTCGGGACGCCAGGC-GGCCTTTATTTCCTCTTATGAAGAGAAAGAG--- 681
BSNT_05929___ 682 CATGATTGGTTTGAGCTTGAACGGAAAAAACAACGCTTTACAAGATGGCG 731
.|.|..||||||||.||||||.|.|||...||.||.|||||.||||||||
RBAM_035980__ 682 AAGGCGTGGTTTGACCTTGAAAGCAAACGTCAGCGGTTTACGAGATGGCG 731
BSNT_05929___ 732 GGATTTTGCTGCGCAATGCCTTGTCGCCGGCCTTATTTTGCTGATGCTGT 781
.|||.|.||.||||||||.|||||||.||||.|.||.|||.|.|||||||
RBAM_035980__ 732 TGATCTCGCCGCGCAATGTCTTGTCGGCGGCTTCATATTGATCATGCTGT 781
BSNT_05929___ 782 TTTGGACGGCGGGACAGCAAGCGGACGGCGAGC-TCGCTAAAACGATGAT 830
|.||||||||.||.|||.|.||||||||| ||| ||||.||.||||||||
RBAM_035980__ 782 TCTGGACGGCAGGTCAGTATGCGGACGGC-AGCATCGCCAACACGATGAT 830
BSNT_05929___ 831 TGCCGCTTTTGTGCTAGTGGTGTTTCCGTTGACGGAAGCCTTTTTGCCGC 880
|||.||.||||||||.||.||.|||||.||||||||.||.|||.||||.|
RBAM_035980__ 831 TGCGGCCTTTGTGCTTGTCGTATTTCCATTGACGGAGGCGTTTCTGCCCC 880
BSNT_05929___ 881 TTTCGGATGC-CTTAGGCGAAGTGCCGGGCTATCAGGATTCTATCAGACG 929
|||||||||| ||.|.| ||||||||....|||||||||||.||||.|.|
RBAM_035980__ 881 TTTCGGATGCGCTGACG-GAAGTGCCTTCTTATCAGGATTCCATCAAAAG 929
BSNT_05929___ 930 CATGAACAAGGTGGCTCCTCAGCTG---------GAGGCGTCACAAACTG 970
.||||...|||.||||||..||||| |||| ||
RBAM_035980__ 930 AATGAGTCAGGCGGCTCCGGAGCTGCGAAGTCGTGAGG----------TG 969
BSNT_05929___ 971 AATCAG-GGGATCAAATGCTCGATCT-TCAAGATGTCAC-CTTGGCCTTT 1017
||.||| .||||.|.|..||.|||.| || .|||||.|| ||| .|.|||
RBAM_035980__ 970 AAGCAGACGGATGAGAAACTGGATGTATC-GGATGTGACACTT-ACATTT 1017
BSNT_05929___ 1018 CGTGATGTGACGTTTTCTTATGA-CAACAGCAGCCAAGTGCTGCACAACT 1066
..|.|.||||||||||||||||| ||.|| |||.||.|||||..||...|
RBAM_035980__ 1018 GATAACGTGACGTTTTCTTATGATCAGCA-CAGTCATGTGCTTGACCGTT 1066
BSNT_05929___ 1067 TTTCCTTTACGCTGCGCCAAGGAGAAAAAATGGCGCTGCTCGGCCGAAGC 1116
|||||||.||.||.||||||||.|||||||||||||||||||||.|.|||
RBAM_035980__ 1067 TTTCCTTCACTCTCCGCCAAGGTGAAAAAATGGCGCTGCTCGGCAGGAGC 1116
BSNT_05929___ 1117 GGCTCTGGGAAATCAACATCGCTTGCATTAATCGAAGGCGCCTTGAAACC 1166
|||||.||.||.||.||.||.||.||.|||||.|||||.|||||....||
RBAM_035980__ 1117 GGCTCCGGTAAGTCGACCTCTCTCGCTTTAATTGAAGGTGCCTTAGTTCC 1166
BSNT_05929___ 1167 GGACTCCGGTTCTGTGACGTTAAACGGAGTGGAGACAGC-GCTGTTAAAG 1215
.||.||.||....||||.|.|.||.||..||||.||.|| ||.| |..||
RBAM_035980__ 1167 CGATTCGGGCAAAGTGATGCTGAATGGGCTGGAAACTGCGGCCG-TGCAG 1215
BSNT_05929___ 1216 GATCAGATTGCGGATGCGGTGGCCGTGTTAAATCAAAAACCGCACCTGTT 1265
||.||||||.|....|||||||||||.||.|||||.|||||.||.||.||
RBAM_035980__ 1216 GAGCAGATTTCCTCAGCGGTGGCCGTTTTGAATCAGAAACCTCATCTCTT 1265
BSNT_05929___ 1266 TGATACAAGTATTTTGAACAACATCAGGCTCGGAAACGGAGAAGCAAGCG 1315
|.|.||.||.|||.|||||||.|||.|||||||||||||..|.||.||.|
RBAM_035980__ 1266 TAACACGAGCATTATGAACAATATCCGGCTCGGAAACGGCAAGGCGAGTG 1315
BSNT_05929___ 1316 ACGAGGATGT-----GCGCCGCGCCGCAAAGCAGGTCAAGCTGCATGACT 1360
|.||.||||| |.||.||.|.|||| ||.|||.|||||||.|
RBAM_035980__ 1316 ATGAAGATGTTAAGCGTGCGGCTCGGCAA-----GTGAAGTTGCATGATT 1360
BSNT_05929___ 1361 ACATTGAGTCATTGCCTGATGGATATCATACCTCTGTACAAGAAACCGGC 1410
|.|||||.|||.|||||||.||||||.|.||.||.||.||.||.||.||.
RBAM_035980__ 1361 ATATTGAATCACTGCCTGACGGATATGAAACGTCCGTGCAGGAGACGGGG 1410
BSNT_05929___ 1411 ATCCGTTTTTCCGGTGGAGAGCGCCAGCGGATCGCGCTTGCGAGGATTTT 1460
||.|||||.||.||.||.||.||.|||||||||||||||||..|.|||.|
RBAM_035980__ 1411 ATTCGTTTCTCAGGCGGGGAACGGCAGCGGATCGCGCTTGCCCGTATTCT 1460
BSNT_05929___ 1461 GCTGCAGGATACACCGATCATCATCCTCGATGAGCCAACAGTCGGCCTCG 1510
|||.||.||.||.|||.|.||.|||||.|||||.||.||.||||||||.|
RBAM_035980__ 1461 GCTCCAAGACACGCCGGTTATTATCCTTGATGAACCGACGGTCGGCCTTG 1510
BSNT_05929___ 1511 ATCCTATTACCGAACGTGAATTGATGGAAACGGTGTTTGAGGTGCTGAAA 1560
||.|..|.||.|||||.||||||.|.||.|||.|.|||||.||..|.|||
RBAM_035980__ 1511 ATGCGGTCACTGAACGCGAATTGCTTGATACGATTTTTGATGTCTTTAAA 1560
BSNT_05929___ 1561 GGAAAAACGATTTTATGGATTACCCACCATCTCGCGGGAGTGGAAGCGGC 1610
|..||||||||..|.||||||||.||||||.|.|||||.||||||.|.||
RBAM_035980__ 1561 GAGAAAACGATCCTCTGGATTACACACCATTTAGCGGGTGTGGAAACAGC 1610
BSNT_05929___ 1611 TGATAAAATCGTATTTCTCGAAAACGGCAAAACAGAAATGGAAGGAACCC 1660
||||||||||||.|||.|.|||||.||.|||.||||||||||||||||.|
RBAM_035980__ 1611 TGATAAAATCGTCTTTTTAGAAAATGGAAAAGCAGAAATGGAAGGAACTC 1660
BSNT_05929___ 1661 ATGAGGAGCTTCTGGCGGCAAACGAACGGTAC----AGCCGCCTGTATCA 1706
||.|.|||||.||.||.|.||||||||||||| || ||.||.|.
RBAM_035980__ 1661 ATCAAGAGCTGCTTGCAGAAAACGAACGGTACCGGAAG----CTTTACCG 1706
BSNT_05929___ 1707 CCTTGATGTTCCTGT---AAAATAG 1728
.|||||||||||..| ||.|||.
RBAM_035980__ 1707 TCTTGATGTTCCGATCAGAACATAA 1731
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.