Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05926 and RBAM_035970

See Amino acid alignment / Visit BSNT_05926 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:26
# Commandline: needle
#    -asequence dna-align/BSNT_05926___yxkO.1.9828.seq
#    -bsequence dna-align/RBAM_035970___yxkO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05926___yxkO-RBAM_035970___yxkO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05926___yxkO-RBAM_035970___yxkO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05926___yxkO
# 2: RBAM_035970___yxkO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 843
# Identity:     618/843 (73.3%)
# Similarity:   618/843 (73.3%)
# Gaps:          24/843 ( 2.8%)
# Score: 2141.0
# 
#
#=======================================

BSNT_05926___      1 ATGAATGTTCCAT--ATTGGACGGAAGAGCATGTAAGGGCCACGCTTCCT     48
                     ||||||.|  .||  |||||||||||.||.||||.|..|..|||||.|| 
RBAM_035970__      1 ATGAATAT--AATGGATTGGACGGAACAGGATGTGAAAGATACGCTGCC-     47

BSNT_05926___     49 GAA-AGAGATGCGGAGAGCCATAAAGGCACGTACGGTACGGCTTTGCTGC     97
                     ||| .|.||.||.||.||||||||.||.||||.|||.|||||.||..|||
RBAM_035970__     48 GAAGCGGGAGGCAGACAGCCATAAGGGGACGTTCGGGACGGCGTTATTGC     97

BSNT_05926___     98 TGGCTGGAAGTGACGACATGCCGGGGGCAGCGCTGCTTGCAGGGCTTGGG    147
                     ||||.||.||.||.|||||||||||.||.||.||.||.|| .||.|||||
RBAM_035970__     98 TGGCCGGCAGCGAAGACATGCCGGGAGCTGCCCTTCTGGC-CGGATTGGG    146

BSNT_05926___    148 -GCCATGCGGAGCGGTCTCGGCAAGCTTGTCATCGGTACATCAGAAAGCG    196
                      ||.|||.|.||||||.||||||||||.||||||||||||||.|.|.|||
RBAM_035970__    147 CGCGATGAGAAGCGGTGTCGGCAAGCTCGTCATCGGTACATCGGCAGGCG    196

BSNT_05926___    197 TAATCCCGCTAATTGTTCCTGTTTTGCCCGAGGCGACCTATTGGCGTGAC    246
                     |.||||||||.||.||.||.||..||||.||.|||||.||.|||||||||
RBAM_035970__    197 TCATCCCGCTTATCGTCCCGGTGCTGCCGGAAGCGACGTACTGGCGTGAC    246

BSNT_05926___    247 GGCTGGAAAAAGGCGGCGGATGCTCAGCTTGAAGAGACGTACCGGGCCAT    296
                     |||||||||||.||.||||..|..||||..|..||.||...|||||||..
RBAM_035970__    247 GGCTGGAAAAAAGCCGCGGCGGGCCAGCCCGGGGAAACCATCCGGGCCGC    296

BSNT_05926___    297 TGCCATCGGACCGGGCCTTCCGCAAACGGA--AAGCGTACAGCAGGCAGT    344
                     ||||.||||.|||||||||||.|||||.||  ||  ||.||||||||.|.
RBAM_035970__    297 TGCCCTCGGGCCGGGCCTTCCCCAAACAGACGAA--GTGCAGCAGGCGGC    344

BSNT_05926___    345 CGATCATGTGCTTACGGCTGATTGTCCTGTTATTTTGGATGCCGGAGCGC    394
                     .|||||..|||||.|.||.||||.|||.||.||..||||.||.||.||..
RBAM_035970__    345 TGATCAGCTGCTTTCTGCCGATTATCCCGTCATACTGGACGCGGGCGCCA    394

BSNT_05926___    395 TGGCGAAGCGCACATATCCGAAACGAG--AGGCCCCCGTCATCCTCACGC    442
                     |..||||..|.||.|||||  ||.|||  |.||||||||.|||.|.||||
RBAM_035970__    395 TTACGAAAAGAACCTATCC--AAAGAGGAAAGCCCCCGTGATCTTGACGC    442

BSNT_05926___    443 CGCACCCGGGCGAGTTTTCCCGAATGACAGGGATGCCCGTGAACGA-ATT    491
                     |.||.||.|||||.||||||.||||||||||..|.||..|..|.|| |||
RBAM_035970__    443 CTCATCCCGGCGAATTTTCCAGAATGACAGGCCTTCCGATTCAAGAGATT    492

BSNT_05926___    492 GCAGAAAAAAAGAGCGGAATATGCAAAGGAATGGGCGGCTCAGCTGCAGA    541
                      |||.|.||.|||||||.||||||...|||||||||||..|.|||.||  
RBAM_035970__    493 -CAGCAGAACAGAGCGGGATATGCCGCGGAATGGGCGGAGCGGCTTCA--    539

BSNT_05926___    542 CTGTC---ATTGTGTTAAAAGGAAACCAAACCGTCATCGCGTTTCCTGAT    588
                      .|||   |||||..|.|||||||||.|||||.|.|||||.|||||.||.
RBAM_035970__    540 -CGTCACGATTGTCCTGAAAGGAAACGAAACCATTATCGCTTTTCCCGAC    588

BSNT_05926___    589 GGAGACTGCTGGCTCAATCCAACCGGAAACGGGGCGCTCGCCAAGGGCGG    638
                     ||.||.|||.|....|||.|||||||||||||.|||||.||.||.|||||
RBAM_035970__    589 GGGGAATGCCGCAGGAATACAACCGGAAACGGCGCGCTTGCAAAAGGCGG    638

BSNT_05926___    639 AACCGGTGACACACTGGCGGGCATGATATTGGGGATGCTCTGCTGCCATG    688
                     .|||||.|||||.|||.||||.|||||..|.||.|||||.|||||.|||.
RBAM_035970__    639 GACCGGCGACACGCTGACGGGAATGATTCTCGGCATGCTGTGCTGTCATC    688

BSNT_05926___    689 AAGATCCAAAGCACGCCATATTAAACGCGGTCTATTTGCATGGTGCGTGC    738
                     ||||.||.|||||.|||.||||.|||||.|||....|.||.||||..||.
RBAM_035970__    689 AAGACCCGAAGCATGCCGTATTGAACGCCGTCCGCCTTCACGGTGAATGT    738

BSNT_05926___    739 GCCGAGCTCTGGACGGACGAGCACTCCGCTCATACGTTGCTCGCTCATGA    788
                     ||.|||.|.||||||.|.||||.||||||.|||||.||..|.||.||.||
RBAM_035970__    739 GCGGAGTTATGGACGAAAGAGCGCTCCGCCCATACCTTATTGGCGCACGA    788

BSNT_05926___    789 GCTATCTGACATCCTGCCCCGCGTGTGGAAACGATTTGAATGA    831
                     .||.|||||..|.|||||.||.||.|||||...||.|||||.|
RBAM_035970__    789 ACTTTCTGAACTGCTGCCGCGTGTATGGAAGGAATATGAATAA    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05926 and RBAM_035970

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
