Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05923 and RBAM_035960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:26
# Commandline: needle
# -asequence dna-align/BSNT_05923___yxlA.1.9828.seq
# -bsequence dna-align/RBAM_035960___yxlA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05923___yxlA-RBAM_035960___yxlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05923___yxlA-RBAM_035960___yxlA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05923___yxlA
# 2: RBAM_035960___yxlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1378
# Identity: 1091/1378 (79.2%)
# Similarity: 1091/1378 (79.2%)
# Gaps: 23/1378 ( 1.7%)
# Score: 4321.0
#
#
#=======================================
BSNT_05923___ 1 TTGAAAGTAGAAAGGCGAACGATTGAATATATTCCGAATGAAGAAAGACA 50
|||||||||||||||||||||||||||.||||||||.||||.||||||||
RBAM_035960__ 1 TTGAAAGTAGAAAGGCGAACGATTGAACATATTCCGCATGACGAAAGACA 50
BSNT_05923___ 51 TGGTAAAGCGAAAGATTTATTTCCCGTATGGTTCGGGGCTAATATGCATA 100
.||.||.||.|||||||||||.|||||.|||||||||||.||||||||||
RBAM_035960__ 51 CGGAAAGGCTAAAGATTTATTCCCCGTCTGGTTCGGGGCGAATATGCATA 100
BSNT_05923___ 101 TCACCACGTTAGTGACCGGCACGATTCCCGTTGCAATGGGACTTAATCTG 150
|.||.||||||||.||.|||||..|.||||||.|||||||.||..||||.
RBAM_035960__ 101 TTACGACGTTAGTCACAGGCACACTGCCCGTTACAATGGGGCTCGATCTC 150
BSNT_05923___ 151 TTTTGGAGTGTTGCCGCTATTATTTGCGGAACCTTAATCGGTGCCATATT 200
|||||||||.|.|||||.||||||..|||||||||.|||||.||.||.||
RBAM_035960__ 151 TTTTGGAGTATCGCCGCCATTATTATCGGAACCTTTATCGGCGCAATCTT 200
BSNT_05923___ 201 TATGGCGTCTCATTCCGCACAAGGCCCTCAGCTAGGCATCCCGCAAATGA 250
||||||||||||||||||||||||.||||||||.||.||.||||||||||
RBAM_035960__ 201 TATGGCGTCTCATTCCGCACAAGGACCTCAGCTCGGAATTCCGCAAATGA 250
BSNT_05923___ 251 TTCAAAGCCGTGCCCAATTCGGCGTAATCGGAGCGATTCTTCCCCTCTTC 300
||||||||||.||.|||||||||||.||||||||||||||.||||||||.
RBAM_035960__ 251 TTCAAAGCCGCGCGCAATTCGGCGTGATCGGAGCGATTCTGCCCCTCTTT 300
BSNT_05923___ 301 TTAGTCATGTTTATCTACCTTGGTTTCTTCGCAAGCAGCACGATTCTGGC 350
||.|||||||||||||||||.||.|||||.||.|||||.||||||||.||
RBAM_035960__ 301 TTGGTCATGTTTATCTACCTGGGCTTCTTTGCGAGCAGTACGATTCTCGC 350
BSNT_05923___ 351 GGCCGGAACCTTAAGCAGCTTTGTTCCCATCCCGGGAACATGGAGCATTA 400
.|||||.||..|.|||||||||||.||.||.||||...|||||.|.||||
RBAM_035960__ 351 AGCCGGTACACTGAGCAGCTTTGTACCGATTCCGGCTTCATGGTGTATTA 400
BSNT_05923___ 401 TAGGCTTAAGCGCCGTATGTTTTTTACTCACCATTTTCGGCCATGATTTG 450
|.||||||||||||.|.||||||||||||||.||.|.|||.||||||.||
RBAM_035960__ 401 TCGGCTTAAGCGCCATCTGTTTTTTACTCACGATCTACGGTCATGATCTG 450
BSNT_05923___ 451 ATTCACAAAATGCAAAAAATCCTTTCTTGGACCTCTTTTGCTGTATTTTT 500
||||||||||||||.||||||||.|||||||||||.|||||.||.|||||
RBAM_035960__ 451 ATTCACAAAATGCAGAAAATCCTCTCTTGGACCTCCTTTGCCGTTTTTTT 500
BSNT_05923___ 501 TGCTGCAACGATTCTCATTTTTCAATTGCCGATTCCAGCAGGCAGCTGGA 550
|||||||||||||||.|||||||||.||||||||||..||||.||||||.
RBAM_035960__ 501 TGCTGCAACGATTCTTATTTTTCAACTGCCGATTCCTTCAGGAAGCTGGG 550
BSNT_05923___ 551 TTCCCGGAGCGATT-GATCTGCCAATTTTCTTGGTGGCAGTCAGCGCAGT 599
|.|||||..| ||| ||||||||..||||..|.|||||.||||||||.||
RBAM_035960__ 551 TGCCCGGCTC-ATTAGATCTGCCTGTTTTTCTAGTGGCGGTCAGCGCGGT 599
BSNT_05923___ 600 TGCGACGTGGCAGCTTGCCTACGCGCCGTATGTTGCCGATTATTCAAGAT 649
.||.||.||||||||.||.||||||||.|||||.||.||||||||..|.|
RBAM_035960__ 600 GGCCACATGGCAGCTGGCATACGCGCCATATGTCGCAGATTATTCCCGTT 649
BSNT_05923___ 650 ATCTGCCAGTTAAAACACCGGCTTCAAAAACATTTTGGTACAGCTATGCA 699
|||||||.||.|||||||||||.||..|.||.||||||||||||||.|||
RBAM_035960__ 650 ATCTGCCGGTCAAAACACCGGCATCGCATACCTTTTGGTACAGCTACGCA 699
BSNT_05923___ 700 GGTACATCTGTCAGCTCCATCTGGATGATGCTGCTCGGCG-CATTGCTGA 748
|||||.||.|||||.|||||||||||||||||.||||||| |||| .|||
RBAM_035960__ 700 GGTACGTCAGTCAGTTCCATCTGGATGATGCTTCTCGGCGCCATT-TTGA 748
BSNT_05923___ 749 CAACCTCACTTCCTGACTTTACGGCAAACTCAGGCAGCCAGATTGTCCAA 798
|.||..|.||.||.||.|||||..|.||..|.||.|...|||||||||.|
RBAM_035960__ 749 CGACGGCGCTCCCGGAATTTACCTCTAATGCGGGAAATGAGATTGTCCGA 798
BSNT_05923___ 799 TTGTTCGGTCCCTTCTCGTTTATTATGCTGATCATTGTGTTATTTGGGCA 848
|||||||||||.||.||.|||||||||||||||||.||..|.||.|||||
RBAM_035960__ 799 TTGTTCGGTCCGTTTTCCTTTATTATGCTGATCATCGTCCTGTTCGGGCA 848
BSNT_05923___ 849 AATGGCAATCAATGTTTTTAACCTGTATGGGGCCTTCATGTCCACGACAA 898
||||||.|||||.||.|||||..|.||.||.|||||.|||||.|||||.|
RBAM_035960__ 849 AATGGCGATCAACGTCTTTAATTTATACGGAGCCTTTATGTCAACGACGA 898
BSNT_05923___ 899 CAACGCTGGAGCCGTTTCTGAAATTAAAAGTCACGCCCAAAGTCAGAATC 948
|.||..|||||||||||.|.|||.|.||.||.|||||.|||...|||.|.
RBAM_035960__ 899 CTACCTTGGAGCCGTTTTTAAAACTGAAGGTGACGCCGAAAACGAGAGTG 948
BSNT_05923___ 949 ATCATGATCCTGGGCGTCACGCTTGTCGGCACAGTCTTAAGCCTACTGGG 998
.|.||||||||..|.||.|||...|..||.||.||.|||||.||..||||
RBAM_035960__ 949 GTAATGATCCTTTGTGTGACGGCAGCAGGTACTGTATTAAGTCTCTTGGG 998
BSNT_05923___ 999 ACAGAGCAATTTTATGGAGCTGTTTTTGAATTTTATCTTTTTCATCAGTT 1048
.||.||||||||.|||||.||||||||.|||||.||||||||||||||||
RBAM_035960__ 999 CCAAAGCAATTTCATGGAACTGTTTTTAAATTTCATCTTTTTCATCAGTT 1048
BSNT_05923___ 1049 ATTTCTTAATTCCGTGGACGGCAATCAATTTAGTCGATTACTACTTCGTT 1098
|||||||||||||.||||||||.|||||..|.||.||||||||.||..|.
RBAM_035960__ 1049 ATTTCTTAATTCCATGGACGGCGATCAACCTCGTGGATTACTATTTTATC 1098
BSNT_05923___ 1099 CGCCACGGAAAGTATCAAGTCAAAGCCATGTTCGACGTAAACGGGCCTTA 1148
||||.||||||.||.||.||||||.|.|||||.|||||.|||||.|..||
RBAM_035960__ 1099 CGCCGCGGAAAATACCACGTCAAATCGATGTTTGACGTCAACGGACAATA 1148
BSNT_05923___ 1149 TGGAAAGGTCAATTGGATCACCACAATTGCGTTCGTTCTGTCTATCTTGC 1198
.||.|.||||||||||||.||..|....||.|||||..||||.||..|..
RBAM_035960__ 1149 CGGCAGGGTCAATTGGATTACAGCGGCCGCCTTCGTGTTGTCGATTATAT 1198
BSNT_05923___ 1199 TGGAAATTCCGTTTATCAACACAAGCTTTTACATCGGACCGCTTGCCAAA 1248
|.|||||.||.||.|||||.|||..||||||||||||.|||||.||..||
RBAM_035960__ 1199 TAGAAATCCCATTCATCAATACATCCTTTTACATCGGGCCGCTCGCTGAA 1248
BSNT_05923___ 1249 ATGTTTGGCGGCGGAGACATCGCATGGATTATCGGCTTGGCCGTGCCTTC 1298
||.||.|||||.||.|||||.||.|||.|.||||||.|||||||.||.||
RBAM_035960__ 1249 ATATTCGGCGGAGGCGACATTGCCTGGGTCATCGGCCTGGCCGTTCCGTC 1298
BSNT_05923___ 1299 TGTGCTTTACTATGTATTAATGAAACCGCGTCTGAAAAAACGGGCGGGGT 1348
..||||.||.|||||..|.||||||.| || ||||
RBAM_035960__ 1299 GCTGCTGTATTATGTCCTGATGAAATC-----------AA------GGGT 1331
BSNT_05923___ 1349 --ATCAAGAAAAGCTGTCTTCTCTCTGA 1374
|.|||.||.||..|.|||||||.|||
RBAM_035960__ 1332 AAAACAACAAGAGGCGCCTTCTCTATGA 1359
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