Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05923 and RBAM_035960

See Amino acid alignment / Visit BSNT_05923 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:26
# Commandline: needle
#    -asequence dna-align/BSNT_05923___yxlA.1.9828.seq
#    -bsequence dna-align/RBAM_035960___yxlA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05923___yxlA-RBAM_035960___yxlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05923___yxlA-RBAM_035960___yxlA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05923___yxlA
# 2: RBAM_035960___yxlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1378
# Identity:    1091/1378 (79.2%)
# Similarity:  1091/1378 (79.2%)
# Gaps:          23/1378 ( 1.7%)
# Score: 4321.0
# 
#
#=======================================

BSNT_05923___      1 TTGAAAGTAGAAAGGCGAACGATTGAATATATTCCGAATGAAGAAAGACA     50
                     |||||||||||||||||||||||||||.||||||||.||||.||||||||
RBAM_035960__      1 TTGAAAGTAGAAAGGCGAACGATTGAACATATTCCGCATGACGAAAGACA     50

BSNT_05923___     51 TGGTAAAGCGAAAGATTTATTTCCCGTATGGTTCGGGGCTAATATGCATA    100
                     .||.||.||.|||||||||||.|||||.|||||||||||.||||||||||
RBAM_035960__     51 CGGAAAGGCTAAAGATTTATTCCCCGTCTGGTTCGGGGCGAATATGCATA    100

BSNT_05923___    101 TCACCACGTTAGTGACCGGCACGATTCCCGTTGCAATGGGACTTAATCTG    150
                     |.||.||||||||.||.|||||..|.||||||.|||||||.||..||||.
RBAM_035960__    101 TTACGACGTTAGTCACAGGCACACTGCCCGTTACAATGGGGCTCGATCTC    150

BSNT_05923___    151 TTTTGGAGTGTTGCCGCTATTATTTGCGGAACCTTAATCGGTGCCATATT    200
                     |||||||||.|.|||||.||||||..|||||||||.|||||.||.||.||
RBAM_035960__    151 TTTTGGAGTATCGCCGCCATTATTATCGGAACCTTTATCGGCGCAATCTT    200

BSNT_05923___    201 TATGGCGTCTCATTCCGCACAAGGCCCTCAGCTAGGCATCCCGCAAATGA    250
                     ||||||||||||||||||||||||.||||||||.||.||.||||||||||
RBAM_035960__    201 TATGGCGTCTCATTCCGCACAAGGACCTCAGCTCGGAATTCCGCAAATGA    250

BSNT_05923___    251 TTCAAAGCCGTGCCCAATTCGGCGTAATCGGAGCGATTCTTCCCCTCTTC    300
                     ||||||||||.||.|||||||||||.||||||||||||||.||||||||.
RBAM_035960__    251 TTCAAAGCCGCGCGCAATTCGGCGTGATCGGAGCGATTCTGCCCCTCTTT    300

BSNT_05923___    301 TTAGTCATGTTTATCTACCTTGGTTTCTTCGCAAGCAGCACGATTCTGGC    350
                     ||.|||||||||||||||||.||.|||||.||.|||||.||||||||.||
RBAM_035960__    301 TTGGTCATGTTTATCTACCTGGGCTTCTTTGCGAGCAGTACGATTCTCGC    350

BSNT_05923___    351 GGCCGGAACCTTAAGCAGCTTTGTTCCCATCCCGGGAACATGGAGCATTA    400
                     .|||||.||..|.|||||||||||.||.||.||||...|||||.|.||||
RBAM_035960__    351 AGCCGGTACACTGAGCAGCTTTGTACCGATTCCGGCTTCATGGTGTATTA    400

BSNT_05923___    401 TAGGCTTAAGCGCCGTATGTTTTTTACTCACCATTTTCGGCCATGATTTG    450
                     |.||||||||||||.|.||||||||||||||.||.|.|||.||||||.||
RBAM_035960__    401 TCGGCTTAAGCGCCATCTGTTTTTTACTCACGATCTACGGTCATGATCTG    450

BSNT_05923___    451 ATTCACAAAATGCAAAAAATCCTTTCTTGGACCTCTTTTGCTGTATTTTT    500
                     ||||||||||||||.||||||||.|||||||||||.|||||.||.|||||
RBAM_035960__    451 ATTCACAAAATGCAGAAAATCCTCTCTTGGACCTCCTTTGCCGTTTTTTT    500

BSNT_05923___    501 TGCTGCAACGATTCTCATTTTTCAATTGCCGATTCCAGCAGGCAGCTGGA    550
                     |||||||||||||||.|||||||||.||||||||||..||||.||||||.
RBAM_035960__    501 TGCTGCAACGATTCTTATTTTTCAACTGCCGATTCCTTCAGGAAGCTGGG    550

BSNT_05923___    551 TTCCCGGAGCGATT-GATCTGCCAATTTTCTTGGTGGCAGTCAGCGCAGT    599
                     |.|||||..| ||| ||||||||..||||..|.|||||.||||||||.||
RBAM_035960__    551 TGCCCGGCTC-ATTAGATCTGCCTGTTTTTCTAGTGGCGGTCAGCGCGGT    599

BSNT_05923___    600 TGCGACGTGGCAGCTTGCCTACGCGCCGTATGTTGCCGATTATTCAAGAT    649
                     .||.||.||||||||.||.||||||||.|||||.||.||||||||..|.|
RBAM_035960__    600 GGCCACATGGCAGCTGGCATACGCGCCATATGTCGCAGATTATTCCCGTT    649

BSNT_05923___    650 ATCTGCCAGTTAAAACACCGGCTTCAAAAACATTTTGGTACAGCTATGCA    699
                     |||||||.||.|||||||||||.||..|.||.||||||||||||||.|||
RBAM_035960__    650 ATCTGCCGGTCAAAACACCGGCATCGCATACCTTTTGGTACAGCTACGCA    699

BSNT_05923___    700 GGTACATCTGTCAGCTCCATCTGGATGATGCTGCTCGGCG-CATTGCTGA    748
                     |||||.||.|||||.|||||||||||||||||.||||||| |||| .|||
RBAM_035960__    700 GGTACGTCAGTCAGTTCCATCTGGATGATGCTTCTCGGCGCCATT-TTGA    748

BSNT_05923___    749 CAACCTCACTTCCTGACTTTACGGCAAACTCAGGCAGCCAGATTGTCCAA    798
                     |.||..|.||.||.||.|||||..|.||..|.||.|...|||||||||.|
RBAM_035960__    749 CGACGGCGCTCCCGGAATTTACCTCTAATGCGGGAAATGAGATTGTCCGA    798

BSNT_05923___    799 TTGTTCGGTCCCTTCTCGTTTATTATGCTGATCATTGTGTTATTTGGGCA    848
                     |||||||||||.||.||.|||||||||||||||||.||..|.||.|||||
RBAM_035960__    799 TTGTTCGGTCCGTTTTCCTTTATTATGCTGATCATCGTCCTGTTCGGGCA    848

BSNT_05923___    849 AATGGCAATCAATGTTTTTAACCTGTATGGGGCCTTCATGTCCACGACAA    898
                     ||||||.|||||.||.|||||..|.||.||.|||||.|||||.|||||.|
RBAM_035960__    849 AATGGCGATCAACGTCTTTAATTTATACGGAGCCTTTATGTCAACGACGA    898

BSNT_05923___    899 CAACGCTGGAGCCGTTTCTGAAATTAAAAGTCACGCCCAAAGTCAGAATC    948
                     |.||..|||||||||||.|.|||.|.||.||.|||||.|||...|||.|.
RBAM_035960__    899 CTACCTTGGAGCCGTTTTTAAAACTGAAGGTGACGCCGAAAACGAGAGTG    948

BSNT_05923___    949 ATCATGATCCTGGGCGTCACGCTTGTCGGCACAGTCTTAAGCCTACTGGG    998
                     .|.||||||||..|.||.|||...|..||.||.||.|||||.||..||||
RBAM_035960__    949 GTAATGATCCTTTGTGTGACGGCAGCAGGTACTGTATTAAGTCTCTTGGG    998

BSNT_05923___    999 ACAGAGCAATTTTATGGAGCTGTTTTTGAATTTTATCTTTTTCATCAGTT   1048
                     .||.||||||||.|||||.||||||||.|||||.||||||||||||||||
RBAM_035960__    999 CCAAAGCAATTTCATGGAACTGTTTTTAAATTTCATCTTTTTCATCAGTT   1048

BSNT_05923___   1049 ATTTCTTAATTCCGTGGACGGCAATCAATTTAGTCGATTACTACTTCGTT   1098
                     |||||||||||||.||||||||.|||||..|.||.||||||||.||..|.
RBAM_035960__   1049 ATTTCTTAATTCCATGGACGGCGATCAACCTCGTGGATTACTATTTTATC   1098

BSNT_05923___   1099 CGCCACGGAAAGTATCAAGTCAAAGCCATGTTCGACGTAAACGGGCCTTA   1148
                     ||||.||||||.||.||.||||||.|.|||||.|||||.|||||.|..||
RBAM_035960__   1099 CGCCGCGGAAAATACCACGTCAAATCGATGTTTGACGTCAACGGACAATA   1148

BSNT_05923___   1149 TGGAAAGGTCAATTGGATCACCACAATTGCGTTCGTTCTGTCTATCTTGC   1198
                     .||.|.||||||||||||.||..|....||.|||||..||||.||..|..
RBAM_035960__   1149 CGGCAGGGTCAATTGGATTACAGCGGCCGCCTTCGTGTTGTCGATTATAT   1198

BSNT_05923___   1199 TGGAAATTCCGTTTATCAACACAAGCTTTTACATCGGACCGCTTGCCAAA   1248
                     |.|||||.||.||.|||||.|||..||||||||||||.|||||.||..||
RBAM_035960__   1199 TAGAAATCCCATTCATCAATACATCCTTTTACATCGGGCCGCTCGCTGAA   1248

BSNT_05923___   1249 ATGTTTGGCGGCGGAGACATCGCATGGATTATCGGCTTGGCCGTGCCTTC   1298
                     ||.||.|||||.||.|||||.||.|||.|.||||||.|||||||.||.||
RBAM_035960__   1249 ATATTCGGCGGAGGCGACATTGCCTGGGTCATCGGCCTGGCCGTTCCGTC   1298

BSNT_05923___   1299 TGTGCTTTACTATGTATTAATGAAACCGCGTCTGAAAAAACGGGCGGGGT   1348
                     ..||||.||.|||||..|.||||||.|           ||      ||||
RBAM_035960__   1299 GCTGCTGTATTATGTCCTGATGAAATC-----------AA------GGGT   1331

BSNT_05923___   1349 --ATCAAGAAAAGCTGTCTTCTCTCTGA   1374
                       |.|||.||.||..|.|||||||.|||
RBAM_035960__   1332 AAAACAACAAGAGGCGCCTTCTCTATGA   1359


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