Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05911 and RBAM_035940
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:26
# Commandline: needle
# -asequence dna-align/BSNT_05911.1.9828.seq
# -bsequence dna-align/RBAM_035940___katX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05911-RBAM_035940___katX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05911-RBAM_035940___katX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05911
# 2: RBAM_035940___katX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1614
# Identity: 1023/1614 (63.4%)
# Similarity: 1023/1614 (63.4%)
# Gaps: 441/1614 (27.3%)
# Score: 4515.0
#
#
#=======================================
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 1 ATGGAAAATAACAAAAACAGCGAAGAAACGCTTTCCAGTAAGACGACCGG 50
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 51 TAAAGGCGAGTCAGAAGACACGCTGACAAACCGGCAGGGCCATCCGGTCA 100
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 101 CTGACAACCAGAATGTCAGGACAGTCGGCAATAGAGGACCGACGACATTG 150
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 151 GAGAATTATGATTTTTTGGAGAAAATCAGCCACTTTGATCGCGAACGGAT 200
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 201 TCCCGAGCGCGTCGTTCACGCGCGCGGTGCCGGGGCACACGGATACTTTG 250
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 251 AGGCGTACGGAAGTTTTGGAGACGAGGAGATTTCTACATACACAAGAGCG 300
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 301 AAAGTGTTTCAAAAGAAAGGAATGAAAACTCCGGCGTTTGTGCGGTTTTC 350
BSNT_05911 0 -------------------------------------------------- 0
RBAM_035940__ 351 TACCGTCAACCACGGAAAGCATTCCCCGGAAACATTGCGTGACCCCCGGG 400
BSNT_05911 1 -----------------------------------------TTGGTCGGA 9
.|||||||.
RBAM_035940__ 401 GGTTTGCCGTTAAGCTTTATACCGAAGACGGCAACTGGGATCTGGTCGGC 450
BSNT_05911 10 AACAACCTGAAAATCTTTTTTATCCGCGACCCGCTGAAATTTCCGGATCT 59
||||||.|||||||||||||||||||.||.||||||||.||.||||||||
RBAM_035940__ 451 AACAACTTGAAAATCTTTTTTATCCGTGATCCGCTGAAGTTCCCGGATCT 500
BSNT_05911 60 TGTACACGCATTTCAGCCTGATCCAGTGACAAACATCCAGGATGGTGAAC 109
|||.||||||||||||||||||||.||.||.|||||.|||||.||.||.|
RBAM_035940__ 501 TGTGCACGCATTTCAGCCTGATCCTGTTACGAACATTCAGGACGGCGAGC 550
BSNT_05911 110 GTATCTTCGATTTCATTTCTCAATCTCCTGAAGCGACACACATGATCACC 159
||||.|||||.||||||||.|||||.||.||||||||.||.||||||||.
RBAM_035940__ 551 GTATTTTCGACTTCATTTCCCAATCACCGGAAGCGACTCATATGATCACT 600
BSNT_05911 160 TTCTTGTTTTCGCCTTGGGGCATTCCGGCCAACTACCGGCAAATGCAGGG 209
||||||||||||||.||||||||.|||||||||||||||||.||||||||
RBAM_035940__ 601 TTCTTGTTTTCGCCGTGGGGCATCCCGGCCAACTACCGGCAGATGCAGGG 650
BSNT_05911 210 TTCAGGCGTACATGCCTATAAATGGGTGAATGAGGAGGGCAAGGCCGTTC 259
.||||||||.||||||||.||||||||.|||||.||.||.||.|||||.|
RBAM_035940__ 651 CTCAGGCGTCCATGCCTACAAATGGGTCAATGAAGAAGGAAAAGCCGTAC 700
BSNT_05911 260 TCGTGAAATACCATTTTGAACCGAAGCAGGGCATCCGCAACCTGACACAG 309
||||.|||||.||.|||||||||||.||||||||||||||||||||||||
RBAM_035940__ 701 TCGTCAAATATCACTTTGAACCGAAACAGGGCATCCGCAACCTGACACAG 750
BSNT_05911 310 AAGGAAGCAGAAGAGATTCAAGGGAAAAACTTTAACCATGCCACACAGGA 359
||||||||.|||||||||||.||||||||||||||||||||.||||||||
RBAM_035940__ 751 AAGGAAGCGGAAGAGATTCAGGGGAAAAACTTTAACCATGCGACACAGGA 800
BSNT_05911 360 TTTATATGACGCGATTGAAAATGGCGATTATCCAGAGTGGGAAGTGTATG 409
|||.|||||.|||||||||||.||||||||.||.||.|||||||||||||
RBAM_035940__ 801 TTTGTATGAAGCGATTGAAAAAGGCGATTACCCTGAATGGGAAGTGTATG 850
BSNT_05911 410 CACAAATCATGAGCGATGATGAGCATCCTGAACTGGACTTTGATCCTCTT 459
|.||||||||||..|||||.||.||.||.||.|||||.||||||||.|||
RBAM_035940__ 851 CGCAAATCATGACTGATGACGAACACCCCGAGCTGGATTTTGATCCGCTT 900
BSNT_05911 460 GATCCGACAAAACTGTGGTATAAAGACGATTTTCCATGGAAACCGATCGG 509
||||||||.||.||||||||||||||||||||.||.|||||.||||||||
RBAM_035940__ 901 GATCCGACCAAGCTGTGGTATAAAGACGATTTCCCTTGGAAGCCGATCGG 950
BSNT_05911 510 CAAATTGGTTCTGAACAAAAATCCGGAAAACTACCATGCGGAAGTGGAGC 559
.||||||||||||||||||||.|||||||||||||||||.||.|||||.|
RBAM_035940__ 951 TAAATTGGTTCTGAACAAAAACCCGGAAAACTACCATGCCGAGGTGGAAC 1000
BSNT_05911 560 AAGCTTCATTTGGAACGGGGGTGCTTGTCGACGGGCTTGATTTTTCAGAC 609
||||.|||||.||||||||.||||||||.|||||.|||||||||||.||.
RBAM_035940__ 1001 AAGCGTCATTCGGAACGGGCGTGCTTGTGGACGGCCTTGATTTTTCGGAT 1050
BSNT_05911 610 GACAAATTGCTCCAGGGGCGTACGTTTGCCTACTCTGATACGCAGCGCTA 659
||||||||.||.||||||||.||.||..||||.||.|||||.|||||.||
RBAM_035940__ 1051 GACAAATTACTTCAGGGGCGGACATTCTCCTATTCAGATACCCAGCGGTA 1100
BSNT_05911 660 CCGTGTAGGCGCAAATTACCTGCAGCTTCCGATCAACTCGCCGAAAAAGC 709
|||.||.||||||||.||||||||||||||||||||||||||||||||||
RBAM_035940__ 1101 CCGCGTCGGCGCAAACTACCTGCAGCTTCCGATCAACTCGCCGAAAAAGC 1150
BSNT_05911 710 ATGTCGCCACCAACCAGGAAGGCGGGCAGATGCAATATCGGGTCGATAGA 759
||||||||||||||||||||||||||||.|||||.||||||||||||.|.
RBAM_035940__ 1151 ATGTCGCCACCAACCAGGAAGGCGGGCAAATGCAGTATCGGGTCGATCGG 1200
BSNT_05911 760 GCAGAAGGACAAAACCCGCACGTCAACTATGAGCCATCCATTATGGGCGG 809
|||||||||||||||||||||||||||||||||||.|||||||||||.||
RBAM_035940__ 1201 GCAGAAGGACAAAACCCGCACGTCAACTATGAGCCGTCCATTATGGGAGG 1250
BSNT_05911 810 GCTGAAGGAAGCGAAGCAGGACGGAAAAGACCATACGCCGCATGTCGAAG 859
.||.||.|||||.||||||||.||.|||||||||||.||.||||||||||
RBAM_035940__ 1251 ACTCAACGAAGCAAAGCAGGATGGGAAAGACCATACACCTCATGTCGAAG 1300
BSNT_05911 860 GTGATGTAAAGCGTGAAGCGATTGACAGAACAAACAACTTCGGACAGGCT 909
|.|||||.|.|||.||.|||||.|||.|..|.||.||||||||.|||||.
RBAM_035940__ 1301 GCGATGTGATGCGGGAGGCGATCGACCGGTCGAATAACTTCGGCCAGGCC 1350
BSNT_05911 910 GGAGAAACGTACCGGAGATTTACTGAATTTGAGCGGAACGAATTGATTAC 959
||||||||.|||||.||||||.|.||||||||.||||||||||||||.||
RBAM_035940__ 1351 GGAGAAACATACCGCAGATTTTCAGAATTTGAACGGAACGAATTGATCAC 1400
BSNT_05911 960 GAATTTGGTGAATACGCTTTCTACGTGCCGAAAAGAAATTCAGGATCAAA 1009
.||..||||.||||||||||||.|.|||||.|||||.|||||||||||||
RBAM_035940__ 1401 AAACCTGGTCAATACGCTTTCTTCCTGCCGCAAAGACATTCAGGATCAAA 1450
BSNT_05911 1010 TGATTGAGAATTTCACAAAAGCTGATCCTGACTACGGAAAACGTGTAGCA 1059
||||||||||||||||||||||.|||||.|||||||||||||||||.||.
RBAM_035940__ 1451 TGATTGAGAATTTCACAAAAGCAGATCCGGACTACGGAAAACGTGTGGCG 1500
BSNT_05911 1060 GAAGGGCTAAAAAAGGTTTCCGAAAACAACAGCAACGGGCCGATCGGCAC 1109
||||||||.|||||.|...||||||.|||||||..|||||||||||||||
RBAM_035940__ 1501 GAAGGGCTGAAAAAAGCCGCCGAAAGCAACAGCGGCGGGCCGATCGGCAC 1550
BSNT_05911 1110 AACTGAAACGGAACAGGCTGCAAAGCAGGCTGAACAGGAGAGCCATCCAT 1159
.|||||.||.|.|||.||.|||||.||||||||||||||.||||||||.|
RBAM_035940__ 1551 TACTGATACAGCACAAGCCGCAAAACAGGCTGAACAGGAAAGCCATCCGT 1600
BSNT_05911 1160 CTGATCCGTATTAA 1173
||||||||||||||
RBAM_035940__ 1601 CTGATCCGTATTAA 1614
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