Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01007 and RBAM_035900

See Amino acid alignment / Visit BSNT_01007 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_01007___ydhP.1.9828.seq
#    -bsequence dna-align/RBAM_035900___ydhP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01007___ydhP-RBAM_035900___ydhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01007___ydhP-RBAM_035900___ydhP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01007___ydhP
# 2: RBAM_035900___ydhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1427
# Identity:    1057/1427 (74.1%)
# Similarity:  1057/1427 (74.1%)
# Gaps:          55/1427 ( 3.9%)
# Score: 3798.0
# 
#
#=======================================

BSNT_01007___      1 TTGGCACAAACAGAA----CAATATCGTTTTCC-AAAGGATTTTTGGTGG     45
                     |||.|..||.|| ||    |||||||||||||| .||||| ||.||||||
RBAM_035900__      1 TTGACTGAATCA-AATATTCAATATCGTTTTCCGGAAGGA-TTCTGGTGG     48

BSNT_01007___     46 GGATCATCGGCTTCAGCAACACAAACGGAGGGTGCCGCCGACAGAGACGG     95
                     ||.||.||.||.||.||.||.|||||.||.||.|||||.|||||||||||
RBAM_035900__     49 GGGTCTTCCGCCTCCGCCACCCAAACAGAAGGCGCCGCTGACAGAGACGG     98

BSNT_01007___     96 AAAAGGCCAGAATATATGGGATTATTGGTTTGAAAAAGAACCGCATCGTT    145
                     ||||.||||.||.|||||||||||.||||.|||||||||.|||...||||
RBAM_035900__     99 AAAAAGCCAAAACATATGGGATTACTGGTATGAAAAAGAGCCGAGCCGTT    148

BSNT_01007___    146 TTTTTGATCATGTCGGCCCCGCAGACACATCCCAATTTTACGA-CAACTA    194
                     |||||.|....|||||.||||..|||||.||.|..|||||||| ||| ||
RBAM_035900__    149 TTTTTAACGGCGTCGGTCCCGGCGACACGTCACGTTTTTACGATCAA-TA    197

BSNT_01007___    195 TAAAGAAGATATCAGGCTGATGAAGGAGCTTGGCCACAACTCGTTCCGGA    244
                     .||.||.||||||.||||||||||.||..|.|||||||||||.||||||.
RBAM_035900__    198 CAAGGAGGATATCCGGCTGATGAAAGAAATCGGCCACAACTCCTTCCGGC    247

BSNT_01007___    245 TGTCGATTTCCTGGTCACGATTAATACCAAACGGAACGGGCGAGATCAAC    294
                     ||||.||||||||||||.||||.||.||..|||||||.||||||.||||.
RBAM_035900__    248 TGTCTATTTCCTGGTCAAGATTGATTCCGGACGGAACTGGCGAGGTCAAT    297

BSNT_01007___    295 GATAAAGC---CGCAAATTTCTATAACAATGTCATTGATGAGTTAATCGC    341
                     .|.|||||   |||   .||.|||.|..|.|||||.|||||   ||| ||
RBAM_035900__    298 CAGAAAGCGGTCGC---GTTTTATCAGGACGTCATCGATGA---AAT-GC    340

BSNT_01007___    342 TAACGGA----ATTGAACCTTTTGTCAATTTGTTTCATTTCGATATGCCG    387
                     |..|..|    |||||.||.|||||||||||||||||.||.||.||||||
RBAM_035900__    341 TTGCCCATCATATTGAGCCGTTTGTCAATTTGTTTCACTTTGACATGCCG    390

BSNT_01007___    388 ATAGCGCTTCA----AAAAATCGGTGGCTGGGTCAATAGAGAGACGGTTG    433
                     .|.||.|||||    ||    .||.||||||||||...|..|.||.||||
RBAM_035900__    391 CTCGCCCTTCAGCGGAA----GGGGGGCTGGGTCAGCCGGAACACCGTTG    436

BSNT_01007___    434 ACGCGTATGAAAACTATGCAAGAACTTGCTTCCGTT---TGTTTGGCGGC    480
                     ||||||.||||.|.||.||.|.|||.|||||   ||   |.||.||.|.|
RBAM_035900__    437 ACGCGTTTGAACATTACGCCAAAACATGCTT---TTCGCTATTCGGTGAC    483

BSNT_01007___    481 CGGGTGAAAAAATGGTTTACGCATAATGAACCAATCGTTCCCGTAGAAGG    530
                     ..|||||||||||||||.||.||.||.||.||.||.||.||..|.|||||
RBAM_035900__    484 AAGGTGAAAAAATGGTTCACTCACAACGAGCCGATTGTGCCGATTGAAGG    533

BSNT_01007___    531 CGGATACCTATATGATTTTCATTATCCAAACAAGGTCGACTTTAAAGAGG    580
                     |||.|||.||||.||.|||||.||.||.||..|.||..|.|||.||||.|
RBAM_035900__    534 CGGCTACTTATACGACTTTCACTACCCGAATCATGTTAATTTTCAAGAAG    583

BSNT_01007___    581 CCGTCCAGGTTGGATTTCATACGATGCTATCAAGTGCCCGCGCCATTCAG    630
                     |.||.||||..||.||.|||||..||||.||.|.|||..|.||..|..|.
RBAM_035900__    584 CGGTGCAGGCCGGTTTCCATACCCTGCTGTCGAATGCAAGGGCTGTCAAA    633

BSNT_01007___    631 GCTTACAGGGAGATGAAGCAGGACGGAAAAATCGGCATCATCTTAAATTT    680
                     ||.|||||.||..||||.|||||.|||.|||||||.|||||..|.|||.|
RBAM_035900__    634 GCCTACAGAGAATTGAAACAGGATGGACAAATCGGAATCATTCTGAATCT    683

BSNT_01007___    681 GACCCCTTCATACCCGAGAAGCAGCCATCCGGCGGATGTGAAAG----CC    726
                     |||.|||||.||.|||||||||...|||||.|..|||||.||||    ||
RBAM_035900__    684 GACGCCTTCTTATCCGAGAAGCTCACATCCTGAAGATGTCAAAGCGTCCC    733

BSNT_01007___    727 GGGGAAATCGCAGACGCGTTTTTTAACAGATCTTTTTTAGACCCATCTGT    776
                     ||    ||.||.|||||.|||||.|||.|.||.||||||||.||..|.||
RBAM_035900__    734 GG----ATTGCCGACGCCTTTTTCAACCGCTCATTTTTAGATCCCGCCGT    779

BSNT_01007___    777 CAAAGGCGAATTTCCCAAAGAGCTGGTTGACATTTTGAAGCATGAAGGCT    826
                     .||.|||||||||||..|.|||||.||.||.|||.|.|||...|||||||
RBAM_035900__    780 AAAGGGCGAATTTCCTGAGGAGCTTGTCGAGATTCTCAAGGCGGAAGGCT    829

BSNT_01007___    827 TTATGCCAGATTA----CAACGCTGAAGATCTTGACATCATCAAAAAGAA    872
                     ||.||||..||||    .||    ||||||||...|.||||..|..||.|
RBAM_035900__    830 TTCTGCCGCATTATGAGAAA----GAAGATCTCCGCCTCATTCAGGAGCA    875

BSNT_01007___    873 CACGGTTGACCTGTTGGGAGTGAATTATTACCAGCCGAGACGTGTGAAAG    922
                     .|||||.||||||||.||.|||||.||.|||||||||||.||.||.||.|
RBAM_035900__    876 TACGGTCGACCTGTTAGGCGTGAACTACTACCAGCCGAGGCGCGTCAAGG    925

BSNT_01007___    923 CGAAAGAACATCTTCCGAATCCCGACGCTCCTTTTTTACCGGACAGGTAT    972
                     |.|||||||||.||||||||||..|.||.|||||..|.||.||..|.|..
RBAM_035900__    926 CAAAAGAACATGTTCCGAATCCGCATGCCCCTTTCCTGCCTGAGCGTTTC    975

BSNT_01007___    973 TTTGATCCCTACGTCATGCCGGGCCGCAAAATGAATCCGCATCGAGGCTG   1022
                     ||.|||||.||.||||||||.|||||.||||||||.||.||.||.||.||
RBAM_035900__    976 TTCGATCCGTATGTCATGCCCGGCCGGAAAATGAACCCTCACCGCGGGTG   1025

BSNT_01007___   1023 GGAGATCTATGAAAAAGGCGTTTATGATATTTTGATCAATTTAAAAGAAA   1072
                     |||.||.||.||||||||..|.|||||.|||.|.|.||||.|.|.||||.
RBAM_035900__   1026 GGAAATTTACGAAAAAGGAATCTATGACATTCTCACCAATCTCAGAGAAC   1075

BSNT_01007___   1073 ACTACGGCAACATCGAGTGTTTTATCTCTGAAAACGGTATGGGGGTTGAA   1122
                     |.|||||.||.||||||||||||||.|||||.|||||.|||||.||.|||
RBAM_035900__   1076 ATTACGGAAATATCGAGTGTTTTATTTCTGAGAACGGCATGGGAGTAGAA   1125

BSNT_01007___   1123 GGTGAAGAGCGCTTCAGGGATGAACAAGGCATCATTCAAGATGATTACCG   1172
                     ||.||.||.||||||.|.||||||.|.|||||||||||.|||||||||.|
RBAM_035900__   1126 GGCGAGGAACGCTTCCGCGATGAAAACGGCATCATTCAGGATGATTACAG   1175

BSNT_01007___   1173 GATTGAATTTATAAAAGAGCACCTCAAATGGATTCACCGCGCCATACAG-   1221
                     ||||||||||||..|.||.||.|||||||||.|.||.||.||||| |.| 
RBAM_035900__   1176 GATTGAATTTATCCAGGAACATCTCAAATGGGTGCATCGGGCCAT-CGGA   1224

BSNT_01007___   1222 GAAGGATCAAACGTAAAAGGTTATCACTTATGGACGTTCATGGACAACTG   1271
                     |||||.|||||.||||||||.||||||.|.|||||.||||||||||||||
RBAM_035900__   1225 GAAGGTTCAAATGTAAAAGGCTATCACCTGTGGACTTTCATGGACAACTG   1274

BSNT_01007___   1272 GTCTTGGACAAATGCCTATAAAAACCGATACGGATTTGTATCAGTCAATC   1321
                     ||||||||||||.||.|||||||||||.|||||.||||||||.|||||||
RBAM_035900__   1275 GTCTTGGACAAACGCTTATAAAAACCGCTACGGCTTTGTATCTGTCAATC   1324

BSNT_01007___   1322 TTGAGAAAGACGGAGAAAGAACCGTCAAAAAGAGCGGAAAATGGTTCAAA   1371
                     |.||.||.|..||.|||.|.|||||||||||.|||||....|||||||||
RBAM_035900__   1325 TGGAAAACGGGGGCGAACGGACCGTCAAAAAAAGCGGCCGCTGGTTCAAA   1374

BSNT_01007___   1372 AAGGTTGCTGAGCATAGCGGTTTCTAG   1398
                     ...|||.|.||.||.|.|||.||.||.
RBAM_035900__   1375 GCCGTTTCGGATCAAAACGGATTTTAA   1401


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