Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01007 and RBAM_035900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_01007___ydhP.1.9828.seq
# -bsequence dna-align/RBAM_035900___ydhP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01007___ydhP-RBAM_035900___ydhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01007___ydhP-RBAM_035900___ydhP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01007___ydhP
# 2: RBAM_035900___ydhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1427
# Identity: 1057/1427 (74.1%)
# Similarity: 1057/1427 (74.1%)
# Gaps: 55/1427 ( 3.9%)
# Score: 3798.0
#
#
#=======================================
BSNT_01007___ 1 TTGGCACAAACAGAA----CAATATCGTTTTCC-AAAGGATTTTTGGTGG 45
|||.|..||.|| || |||||||||||||| .||||| ||.||||||
RBAM_035900__ 1 TTGACTGAATCA-AATATTCAATATCGTTTTCCGGAAGGA-TTCTGGTGG 48
BSNT_01007___ 46 GGATCATCGGCTTCAGCAACACAAACGGAGGGTGCCGCCGACAGAGACGG 95
||.||.||.||.||.||.||.|||||.||.||.|||||.|||||||||||
RBAM_035900__ 49 GGGTCTTCCGCCTCCGCCACCCAAACAGAAGGCGCCGCTGACAGAGACGG 98
BSNT_01007___ 96 AAAAGGCCAGAATATATGGGATTATTGGTTTGAAAAAGAACCGCATCGTT 145
||||.||||.||.|||||||||||.||||.|||||||||.|||...||||
RBAM_035900__ 99 AAAAAGCCAAAACATATGGGATTACTGGTATGAAAAAGAGCCGAGCCGTT 148
BSNT_01007___ 146 TTTTTGATCATGTCGGCCCCGCAGACACATCCCAATTTTACGA-CAACTA 194
|||||.|....|||||.||||..|||||.||.|..|||||||| ||| ||
RBAM_035900__ 149 TTTTTAACGGCGTCGGTCCCGGCGACACGTCACGTTTTTACGATCAA-TA 197
BSNT_01007___ 195 TAAAGAAGATATCAGGCTGATGAAGGAGCTTGGCCACAACTCGTTCCGGA 244
.||.||.||||||.||||||||||.||..|.|||||||||||.||||||.
RBAM_035900__ 198 CAAGGAGGATATCCGGCTGATGAAAGAAATCGGCCACAACTCCTTCCGGC 247
BSNT_01007___ 245 TGTCGATTTCCTGGTCACGATTAATACCAAACGGAACGGGCGAGATCAAC 294
||||.||||||||||||.||||.||.||..|||||||.||||||.||||.
RBAM_035900__ 248 TGTCTATTTCCTGGTCAAGATTGATTCCGGACGGAACTGGCGAGGTCAAT 297
BSNT_01007___ 295 GATAAAGC---CGCAAATTTCTATAACAATGTCATTGATGAGTTAATCGC 341
.|.||||| ||| .||.|||.|..|.|||||.||||| ||| ||
RBAM_035900__ 298 CAGAAAGCGGTCGC---GTTTTATCAGGACGTCATCGATGA---AAT-GC 340
BSNT_01007___ 342 TAACGGA----ATTGAACCTTTTGTCAATTTGTTTCATTTCGATATGCCG 387
|..|..| |||||.||.|||||||||||||||||.||.||.||||||
RBAM_035900__ 341 TTGCCCATCATATTGAGCCGTTTGTCAATTTGTTTCACTTTGACATGCCG 390
BSNT_01007___ 388 ATAGCGCTTCA----AAAAATCGGTGGCTGGGTCAATAGAGAGACGGTTG 433
.|.||.||||| || .||.||||||||||...|..|.||.||||
RBAM_035900__ 391 CTCGCCCTTCAGCGGAA----GGGGGGCTGGGTCAGCCGGAACACCGTTG 436
BSNT_01007___ 434 ACGCGTATGAAAACTATGCAAGAACTTGCTTCCGTT---TGTTTGGCGGC 480
||||||.||||.|.||.||.|.|||.||||| || |.||.||.|.|
RBAM_035900__ 437 ACGCGTTTGAACATTACGCCAAAACATGCTT---TTCGCTATTCGGTGAC 483
BSNT_01007___ 481 CGGGTGAAAAAATGGTTTACGCATAATGAACCAATCGTTCCCGTAGAAGG 530
..|||||||||||||||.||.||.||.||.||.||.||.||..|.|||||
RBAM_035900__ 484 AAGGTGAAAAAATGGTTCACTCACAACGAGCCGATTGTGCCGATTGAAGG 533
BSNT_01007___ 531 CGGATACCTATATGATTTTCATTATCCAAACAAGGTCGACTTTAAAGAGG 580
|||.|||.||||.||.|||||.||.||.||..|.||..|.|||.||||.|
RBAM_035900__ 534 CGGCTACTTATACGACTTTCACTACCCGAATCATGTTAATTTTCAAGAAG 583
BSNT_01007___ 581 CCGTCCAGGTTGGATTTCATACGATGCTATCAAGTGCCCGCGCCATTCAG 630
|.||.||||..||.||.|||||..||||.||.|.|||..|.||..|..|.
RBAM_035900__ 584 CGGTGCAGGCCGGTTTCCATACCCTGCTGTCGAATGCAAGGGCTGTCAAA 633
BSNT_01007___ 631 GCTTACAGGGAGATGAAGCAGGACGGAAAAATCGGCATCATCTTAAATTT 680
||.|||||.||..||||.|||||.|||.|||||||.|||||..|.|||.|
RBAM_035900__ 634 GCCTACAGAGAATTGAAACAGGATGGACAAATCGGAATCATTCTGAATCT 683
BSNT_01007___ 681 GACCCCTTCATACCCGAGAAGCAGCCATCCGGCGGATGTGAAAG----CC 726
|||.|||||.||.|||||||||...|||||.|..|||||.|||| ||
RBAM_035900__ 684 GACGCCTTCTTATCCGAGAAGCTCACATCCTGAAGATGTCAAAGCGTCCC 733
BSNT_01007___ 727 GGGGAAATCGCAGACGCGTTTTTTAACAGATCTTTTTTAGACCCATCTGT 776
|| ||.||.|||||.|||||.|||.|.||.||||||||.||..|.||
RBAM_035900__ 734 GG----ATTGCCGACGCCTTTTTCAACCGCTCATTTTTAGATCCCGCCGT 779
BSNT_01007___ 777 CAAAGGCGAATTTCCCAAAGAGCTGGTTGACATTTTGAAGCATGAAGGCT 826
.||.|||||||||||..|.|||||.||.||.|||.|.|||...|||||||
RBAM_035900__ 780 AAAGGGCGAATTTCCTGAGGAGCTTGTCGAGATTCTCAAGGCGGAAGGCT 829
BSNT_01007___ 827 TTATGCCAGATTA----CAACGCTGAAGATCTTGACATCATCAAAAAGAA 872
||.||||..|||| .|| ||||||||...|.||||..|..||.|
RBAM_035900__ 830 TTCTGCCGCATTATGAGAAA----GAAGATCTCCGCCTCATTCAGGAGCA 875
BSNT_01007___ 873 CACGGTTGACCTGTTGGGAGTGAATTATTACCAGCCGAGACGTGTGAAAG 922
.|||||.||||||||.||.|||||.||.|||||||||||.||.||.||.|
RBAM_035900__ 876 TACGGTCGACCTGTTAGGCGTGAACTACTACCAGCCGAGGCGCGTCAAGG 925
BSNT_01007___ 923 CGAAAGAACATCTTCCGAATCCCGACGCTCCTTTTTTACCGGACAGGTAT 972
|.|||||||||.||||||||||..|.||.|||||..|.||.||..|.|..
RBAM_035900__ 926 CAAAAGAACATGTTCCGAATCCGCATGCCCCTTTCCTGCCTGAGCGTTTC 975
BSNT_01007___ 973 TTTGATCCCTACGTCATGCCGGGCCGCAAAATGAATCCGCATCGAGGCTG 1022
||.|||||.||.||||||||.|||||.||||||||.||.||.||.||.||
RBAM_035900__ 976 TTCGATCCGTATGTCATGCCCGGCCGGAAAATGAACCCTCACCGCGGGTG 1025
BSNT_01007___ 1023 GGAGATCTATGAAAAAGGCGTTTATGATATTTTGATCAATTTAAAAGAAA 1072
|||.||.||.||||||||..|.|||||.|||.|.|.||||.|.|.||||.
RBAM_035900__ 1026 GGAAATTTACGAAAAAGGAATCTATGACATTCTCACCAATCTCAGAGAAC 1075
BSNT_01007___ 1073 ACTACGGCAACATCGAGTGTTTTATCTCTGAAAACGGTATGGGGGTTGAA 1122
|.|||||.||.||||||||||||||.|||||.|||||.|||||.||.|||
RBAM_035900__ 1076 ATTACGGAAATATCGAGTGTTTTATTTCTGAGAACGGCATGGGAGTAGAA 1125
BSNT_01007___ 1123 GGTGAAGAGCGCTTCAGGGATGAACAAGGCATCATTCAAGATGATTACCG 1172
||.||.||.||||||.|.||||||.|.|||||||||||.|||||||||.|
RBAM_035900__ 1126 GGCGAGGAACGCTTCCGCGATGAAAACGGCATCATTCAGGATGATTACAG 1175
BSNT_01007___ 1173 GATTGAATTTATAAAAGAGCACCTCAAATGGATTCACCGCGCCATACAG- 1221
||||||||||||..|.||.||.|||||||||.|.||.||.||||| |.|
RBAM_035900__ 1176 GATTGAATTTATCCAGGAACATCTCAAATGGGTGCATCGGGCCAT-CGGA 1224
BSNT_01007___ 1222 GAAGGATCAAACGTAAAAGGTTATCACTTATGGACGTTCATGGACAACTG 1271
|||||.|||||.||||||||.||||||.|.|||||.||||||||||||||
RBAM_035900__ 1225 GAAGGTTCAAATGTAAAAGGCTATCACCTGTGGACTTTCATGGACAACTG 1274
BSNT_01007___ 1272 GTCTTGGACAAATGCCTATAAAAACCGATACGGATTTGTATCAGTCAATC 1321
||||||||||||.||.|||||||||||.|||||.||||||||.|||||||
RBAM_035900__ 1275 GTCTTGGACAAACGCTTATAAAAACCGCTACGGCTTTGTATCTGTCAATC 1324
BSNT_01007___ 1322 TTGAGAAAGACGGAGAAAGAACCGTCAAAAAGAGCGGAAAATGGTTCAAA 1371
|.||.||.|..||.|||.|.|||||||||||.|||||....|||||||||
RBAM_035900__ 1325 TGGAAAACGGGGGCGAACGGACCGTCAAAAAAAGCGGCCGCTGGTTCAAA 1374
BSNT_01007___ 1372 AAGGTTGCTGAGCATAGCGGTTTCTAG 1398
...|||.|.||.||.|.|||.||.||.
RBAM_035900__ 1375 GCCGTTTCGGATCAAAACGGATTTTAA 1401
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