Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01003 and RBAM_035890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_01003.1.9828.seq
# -bsequence dna-align/RBAM_035890___ydhO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01003-RBAM_035890___ydhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01003-RBAM_035890___ydhO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01003
# 2: RBAM_035890___ydhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1344
# Identity: 618/1344 (46.0%)
# Similarity: 618/1344 (46.0%)
# Gaps: 585/1344 (43.5%)
# Score: 2349.5
#
#
#=======================================
BSNT_01003 1 GTGTTCGAGAAAATCAGCCAATTCCTTGTTCCAATTGCAGGGAGGTTAAA 50
|||||.||||||||||||||||||||||||||.||.||.||.|..|||||
RBAM_035890__ 1 GTGTTTGAGAAAATCAGCCAATTCCTTGTTCCGATCGCGGGCAAATTAAA 50
BSNT_01003 51 CAATAACCGCTATTTGCAAGTGCTGCGTGATGCATTTATGCTGGCTTTCC 100
||||||||||||.||||||||..|.||.|||||.|||||||||||.||.|
RBAM_035890__ 51 CAATAACCGCTACTTGCAAGTCTTACGGGATGCTTTTATGCTGGCGTTTC 100
BSNT_01003 101 CGCTTACGATATTCGGGTCCATTTTTGTCGTGTTAACGAATTTGCCGTTT 150
||||.||.||.|||||.||..|.||.||||||.|.|||||..||||||||
RBAM_035890__ 101 CGCTGACCATTTTCGGTTCGGTGTTCGTCGTGCTGACGAACCTGCCGTTT 150
BSNT_01003 151 CTAAACAAAATCATGA------ACGCC---TCAATGCTTACATCGTTTCA 191
.||||||||||||||| .|||| || || || |||||
RBAM_035890__ 151 TTAAACAAAATCATGAGCAGCTCCGCCCTGTC--TG------TC-TTTCA 191
BSNT_01003 192 GTCTC--ATTT--CGGCATTGCCTCCACGGCGACTATGGGCATTATGTCT 237
.|| | |||| |||| ||.||.||||||||.|||||.||||||||.
RBAM_035890__ 192 ATC-CGGATTTGGCGGC---GCTTCGACGGCGACGATGGGGATTATGTCC 237
BSNT_01003 238 GTCTTTGTTGTGTTCGGGATAGGCTATTACCTGTCAAAAAGCTATCAGGT 287
.|.|||||.||.||||||||.|||||||||||.||.||||||||..|.||
RBAM_035890__ 238 ATTTTTGTCGTCTTCGGGATCGGCTATTACCTTTCCAAAAGCTACGAAGT 287
BSNT_01003 288 CGAAGCTGTATTTGGCGGAGCGATCGCTTTGGTCTCCTTT---TTGCTCT 334
.||.||.|||||.|||||.||||||||.|||||.||.||| ||||||
RBAM_035890__ 288 GGAGGCCGTATTCGGCGGGGCGATCGCATTGGTTTCTTTTCTGTTGCTC- 336
BSNT_01003 335 TAACGCCATTTATCGTT---CAGCCGGAAACAGGAGATGCCGTTACAGGG 381
||.||.| ||||| .||||||||||.||..|.||.||..||||.
RBAM_035890__ 337 --ACCCCGT---TCGTTTTAGAGCCGGAAACGGGCAAAGCGGTCGCAGGC 381
BSNT_01003 382 GTTATTCCGGTCGACCGTCTCGGTGCAAAAGGGATGTTTCTTGGGATGAT 431
||.||||||||.|||||.||.||.|||||||||||||||||.||.|||||
RBAM_035890__ 382 GTCATTCCGGTTGACCGGCTTGGAGCAAAAGGGATGTTTCTCGGCATGAT 431
BSNT_01003 432 TACGGCATTTCTTTCTGGTGAAATTTACAGAAGAATCGTTCAAAAAAACC 481
.||.||.|||.|.||.||||||||.|||||||||||||||||.|.||||.
RBAM_035890__ 432 GACCGCGTTTTTGTCAGGTGAAATCTACAGAAGAATCGTTCAGAGAAACT 481
BSNT_01003 482 TGACAATCAAAATGCCAGCCGGCGTTCCGCCTGCTGTAGCAAAATCATTC 531
|.||.||.||.|||||.|||||.|||||.||.|||||.||.|||||.|||
RBAM_035890__ 482 TAACGATTAAGATGCCTGCCGGTGTTCCTCCGGCTGTTGCTAAATCGTTC 531
BSNT_01003 532 GCCGCACTTATTCCGGCTTTTATCACATTGACCGTATTTTTGCTGATTAA 581
||||||.|.|||||||||||||||||..|.|||||.||..|..||||
RBAM_035890__ 532 GCCGCATTGATTCCGGCTTTTATCACGCTTACCGTCTTCCTCTTGAT--- 578
BSNT_01003 582 CGTAATG-----GTGACTCTGTTTTTTAAAACAAATATGCACGACGTTAT 626
.|||| ||.||.|.|.|.|||.|.||.|||.||||.||.||.||
RBAM_035890__ 579 --CAATGCGGCTGTCACCCAGATCTTTCACACCAATCTGCATGATGTCAT 626
BSNT_01003 627 TTATCACGCGATTCAGGCTCCGCTTGTCGGACTTGGAAGCGGTATCATTC 676
||||||..||.||||.||.|||||||||||||||||||||||.|||||||
RBAM_035890__ 627 TTATCATACGGTTCAAGCCCCGCTTGTCGGACTTGGAAGCGGCATCATTC 676
BSNT_01003 677 CAACGCTGATTGCCGTGTTTTTCATACAAATTCTTTGGTTTTTCGGACTG 726
|.||..|.||.||.||.||.||.||.||.|||.|.||||||||||||||.
RBAM_035890__ 677 CTACATTAATCGCTGTTTTCTTTATTCAGATTTTATGGTTTTTCGGACTT 726
BSNT_01003 727 CATGGACAGATCATTATCAACTCCGTGATGGACCCGATTTGGAATACACT 776
||.|||||.|||||||||||.|||||||||||||||||||||||||||.|
RBAM_035890__ 727 CACGGACAAATCATTATCAATTCCGTGATGGACCCGATTTGGAATACATT 776
BSNT_01003 777 GCA-GTAG------------------------------------------ 783
.|| ||.|
RBAM_035890__ 777 ACAGGTCGAAAATTTGGCAGCGTATACAGCGGGGAAAGAGATTCCCCATA 826
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 827 TTATTTCTAAGCCGTTTATGGAGATTTACACCGTCGGAATGGGCGGAACC 876
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 877 GGAATGACATTGGCCATAGTGATCGCCATCTTGCTTTTTATGAAAAGCAA 926
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 927 ACAGATGAAACAGATATCCAAACTCGGTCTCGCGCCGGGCATTTTCAACG 976
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 977 TCAATGAGCCGGTTATTTTCGGTTTGCCGATCGTGATGAACCCGATCATT 1026
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 1027 ATCATTCCGTGGGTGATCGCGCCGATGGTTGTCACCCTTGTCACCTACCT 1076
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 1077 GGCCATGTCGGCGGGGATCGTGCCCCCTCCTACCGGCGTGACCGTGCCTT 1126
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 1127 GGACCGTCCCCCTTTTCATTAACGGGATTATGGCGACCAATTCCGTCATG 1176
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 1177 GGCGGCATTATGCAGCTGGTCAACCTCTGTATTGTGTTTGTCATCTGGTT 1226
BSNT_01003 783 -------------------------------------------------- 783
RBAM_035890__ 1227 CCCGTTTCTTAAAGCGCTGGACAAATTAAACATGGCAAAGGAAAAAGAAG 1276
BSNT_01003 783 -------------------------------------------- 783
RBAM_035890__ 1277 CTGAGACCGAGCAGCATGCCCGGGATGACAGCATGAGTATGTAA 1320
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