Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00917 and RBAM_035860
See
Amino acid alignment /
Visit
BSNT_00917 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_00917___ydfA.1.9828.seq
# -bsequence dna-align/RBAM_035860___ydfA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00917___ydfA-RBAM_035860___ydfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00917___ydfA-RBAM_035860___ydfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00917___ydfA
# 2: RBAM_035860___ydfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1349
# Identity: 923/1349 (68.4%)
# Similarity: 923/1349 (68.4%)
# Gaps: 91/1349 ( 6.7%)
# Score: 3040.5
#
#
#=======================================
BSNT_00917___ 1 TTGACATCAATGATTTTGGCAGT-----ATTCATC--------TTTTTAT 37
||||.||| .||.||| |||||.|
RBAM_035860__ 1 ---------------TTGGGAGTTGCGGTTTTATCAGCGCTGATTTTTGT 35
BSNT_00917___ 38 --TAACTCTAGTATTGGTCATATGGCAGCCGAAAAATTTATCTATAGGGT 85
|.||.||.||.||.||||||||||||||||||.||.||||.||.||.|
RBAM_035860__ 36 GCTGACACTTGTGTTTGTCATATGGCAGCCGAAACATGTATCAATCGGCT 85
BSNT_00917___ 86 GGTCAGCCTGTGGAGGCGCAGTTTTAGCTCTAATAGCAGGTGTTGTCAAT 135
||||.|||||.||.||.||.||..|.|||.|.||.||.||.|..||||..
RBAM_035860__ 86 GGTCTGCCTGCGGCGGAGCGGTCCTCGCTTTGATCGCCGGAGCAGTCAGC 135
BSNT_00917___ 136 TTTCATGATGT----GTTAACTGTGACAGGGATTGTTTGGAATGCGAC-C 180
.|.||.|||.| | || |||||.||.||.||.||||||||||| |
RBAM_035860__ 136 CTGCACGATATCGCGG--AA--GTGACGGGAATCGTCTGGAATGCGACAC 181
BSNT_00917___ 181 TTGGCTTTTGTGGCCATCATACTGATATCGTTAATTCTTGATAATATCGG 230
|| ||.|||.|.|||||.||..|.||.||.|||||||||||.|.||||||
RBAM_035860__ 182 TT-GCCTTTATCGCCATTATTATCATTTCATTAATTCTTGACAGTATCGG 230
BSNT_00917___ 231 TTTCTTTGAATGGGCAGCGCTTCATATGGCTAAGGCTGCAAAAGGAAACG 280
|||.|||||.|||||.|||||.||||||||.|.|||.||.|||||.|.||
RBAM_035860__ 231 TTTTTTTGAGTGGGCCGCGCTGCATATGGCCATGGCGGCCAAAGGCAGCG 280
BSNT_00917___ 281 GTGTGCGGATGTTCGTTTATGTATCTCTATTAGGAGCTATTGTCGCCGCG 330
|..||||||||||..|.|||||.||..|.|||||.|||.|||||.||||.
RBAM_035860__ 281 GGCTGCGGATGTTTCTCTATGTGTCGGTTTTAGGGGCTGTTGTCTCCGCC 330
BSNT_00917___ 331 TTATTTGCAAATGACGGTGCAGCTCTTATATTGACACCAATCGTATTAGC 380
.|.|||||.||||||||.||.||.||.||.|||||.||.||||||.|.||
RBAM_035860__ 331 CTGTTTGCCAATGACGGAGCGGCGCTCATTTTGACGCCCATCGTACTGGC 380
BSNT_00917___ 381 GATGGTCAGAGCATTACATTTTAATGAAAAATTAGTTTTTCCTTTTATCA 430
||||||..|.||.||..||||...||||||..|.||.|||||.|||||.|
RBAM_035860__ 381 GATGGTGCGGGCTTTGAATTTACCTGAAAAGCTGGTCTTTCCGTTTATTA 430
BSNT_00917___ 431 TTGCCAGCGGATTTATTGCGGATACCACTTCGCTTCCTTTAGTAGTGAGC 480
|.|||.|.||.||.||.||.||.|||||.|||||.||..|.||.||.|||
RBAM_035860__ 431 TCGCCGGAGGGTTCATCGCCGACACCACCTCGCTCCCGCTCGTGGTCAGC 480
BSNT_00917___ 481 AATTTGGTCAACATTGTTTCAGCGGACTATTTTCATAT----TACGTTTA 526
|||||||||||.||.||.||.|||||.||.|||||||| ||| |
RBAM_035860__ 481 AATTTGGTCAATATCGTATCCGCGGATTACTTTCATATCGGATAC----A 526
BSNT_00917___ 527 TTGATTATGCATCCAGAATGGTTGTCCCGTACTTGTTTTCGCTGCTGGCG 576
||||.||||||||..|.|||.|.||.||..||.|.|||||..||..|||.
RBAM_035860__ 527 TTGAATATGCATCACGCATGCTGGTGCCCAACCTCTTTTCTTTGGCGGCA 576
BSNT_00917___ 577 AGCATCATTGTACTTTACCTTTTCTTTAGAAAAAGCATACCAAAACGCTA 626
|||||..|.||.||.||.||.|..||.|||||||.|||.||.|||||.|.
RBAM_035860__ 577 AGCATTTTGGTGCTGTATCTCTATTTCAGAAAAAACATTCCGAAACGGTT 626
BSNT_00917___ 627 TG--ATCTGACTGAGGTTAAAAAACCTGTTGAAGCAATTAAAGATCAAAA 674
|| |.|.|.|| .||.|||.|.||||.....||.|||||.|||.|...
RBAM_035860__ 627 TGACACCGGCCT--TGTGAAACATCCTGCATCCGCCATTAAGGATGAGCG 674
BSNT_00917___ 675 CATGTTCAGACTGTCATGGTATATCTTAGGGCTGCTGTTA---ATTGGAT 721
|.|.|||.||.|.||||||..|.||.| |||.| |.||| ||.||.|
RBAM_035860__ 675 CCTTTTCCGATTATCATGGGGTGTCCT--GGCCG-TTTTATTGATCGGGT 721
BSNT_00917___ 722 ATTTTGCAAGTGAATTTTTTTCTATCCCTGTATCAGTGGTAGCGGGCAGC 771
||||.|..||.|...|..|.||.||.||.||.||..|.||.||.|||..|
RBAM_035860__ 722 ATTTCGTCAGCGCGCTGCTGTCGATACCCGTTTCCTTCGTTGCCGGCTCC 771
BSNT_00917___ 772 ATTGCGATCATTTTCTTAAT-----CGCTGCGCAAAAGAGTCCGGCCGTC 816
||.|||.|||||||..|.|| |||.||| .||.||.||||||
RBAM_035860__ 772 ATCGCGGTCATTTTTCTCATTCTGGCGCAGCG-----AAGCCCCGCCGTC 816
BSNT_00917___ 817 CATACAAAGAAAGTGGTGAAAGAGGCGCCATGGGCTATCGTATTCTTTTC 866
|.|.|.||..||||..|.||.||.||.||.|||||.|||||.||.|||||
RBAM_035860__ 817 CCTGCGAAACAAGTCATCAAGGACGCCCCGTGGGCCATCGTGTTTTTTTC 866
BSNT_00917___ 867 AATTGGCATGTACGTTGTTGTGTATGGTGTCCGAAATGCCGGATTAACGG 916
..|.||||||||.|||||.|||||.||..|.||.|||||||||.|.||||
RBAM_035860__ 867 TGTCGGCATGTATGTTGTCGTGTACGGCTTGCGGAATGCCGGACTGACGG 916
BSNT_00917___ 917 ATGTCCTTTCAGATGTGATTCAAGCCGCAGCTGATCAAGGATTGTTTGCT 966
||.|.|||||..|..|.||.||....||.||.|||||.||.||||||||.
RBAM_035860__ 917 ATCTTCTTTCTCAGCTTATACAGAAAGCGGCGGATCACGGTTTGTTTGCG 966
BSNT_00917___ 967 GGGACAATTGGAATGGGCTTTATTGCGGCGATTCTTTCTTCCATTATGAA 1016
||.|||.|.||||||||.|||||.||||||||.||.||.|||.|||||||
RBAM_035860__ 967 GGCACACTCGGAATGGGGTTTATCGCGGCGATCCTCTCCTCCGTTATGAA 1016
BSNT_00917___ 1017 TAACTTGCCGACTGTTATGATTGACGCATTGGCTATTGCCGGTACAGACA 1066
||||.|||||||.||.|||||||||||..|.||.||...|||.||.|.||
RBAM_035860__ 1017 TAACCTGCCGACGGTGATGATTGACGCCATAGCCATCAGCGGAACGGGCA 1066
BSNT_00917___ 1067 CACATGGGATGATGAGAGAAGCGCTTATTTATGCAAATGTGATCGGTTCA 1116
|.||.|||.|||||||||||||..|.|||||.||.|||||.||||||||.
RBAM_035860__ 1067 CTCACGGGCTGATGAGAGAAGCATTGATTTACGCGAATGTTATCGGTTCG 1116
BSNT_00917___ 1117 GATTTAGGGCCTAAAATAACACCGATTGGTTCCTTGGCGACATTATTATG 1166
||..|.|||||.|||||.||.|||||.||.||..|||||||.||.|||||
RBAM_035860__ 1117 GACCTCGGGCCGAAAATTACGCCGATCGGGTCGCTGGCGACGTTGTTATG 1166
BSNT_00917___ 1167 GCTTCATGTTCT--TTCGCACAAAGGTATGAAGATTTCCTGGGGCACGTA 1214
|||.||.||.|| ..||.|.|||.| ||||.|||||||||||.|.|||
RBAM_035860__ 1167 GCTCCACGTGCTGAGCCGGAAAAACG--TGAAAATTTCCTGGGGAATGTA 1214
BSNT_00917___ 1215 TTTTAAAACAGGAATTATCCTCACGATACCCACTTTATTGATCACACTTG 1264
|||.||.|||||..|.||..|.||.||.||.||.|||||.|||||.||..
RBAM_035860__ 1215 TTTCAAGACAGGTCTGATATTAACCATTCCGACGTTATTCATCACCCTGA 1264
BSNT_00917___ 1265 TCGGCCTGTATATTTGGCTGCTGATAATCCAT-----TCTTGTTTCTAA 1308
||||.||.|||.|.||||||.| || .||||.
RBAM_035860__ 1265 TCGGACTTTATTTATGGCTGTT--------ATGGCTCGCTTGA------ 1299
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.