Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05909 and RBAM_035810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:25
# Commandline: needle
# -asequence dna-align/BSNT_05909___yxlJ.1.9828.seq
# -bsequence dna-align/RBAM_035810___yxlJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05909___yxlJ-RBAM_035810___yxlJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05909___yxlJ-RBAM_035810___yxlJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05909___yxlJ
# 2: RBAM_035810___yxlJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity: 444/602 (73.8%)
# Similarity: 444/602 (73.8%)
# Gaps: 22/602 ( 3.7%)
# Score: 1513.5
#
#
#=======================================
BSNT_05909___ 1 GTGACGAGAGAAAAAAATCCGCTGCCCATCACGTTTTATCAAAAAACCGC 50
.||.||.|||||..|||.||..||||.||....||||| |.|.|.||||
RBAM_035810__ 1 ATGGCGGGAGAAGGAAAGCCTTTGCCGATTGAATTTTA-CCAGAGACCG- 48
BSNT_05909___ 51 TC--TTGAGCTTGCCCCATCGCTTCTGGGCTGCCTTCTTGTAAAAGAAAC 98
|| |.|||||||||||.|...|.||.|||||.|||.|.||.|||||.||
RBAM_035810__ 49 TCAGTGGAGCTTGCCCCTTTATTGCTCGGCTGTCTTTTGGTGAAAGAGAC 98
BSNT_05909___ 99 AGACGAAGGCACAGCGTCAGGCTATATTGTGGAAACAGAGGCCTATATGG 148
.||.||.||.||.||.|||||.|..||.||||||||.||.||.|||||||
RBAM_035810__ 99 GGATGAGGGAACGGCTTCAGGTTTCATCGTGGAAACGGAAGCTTATATGG 148
BSNT_05909___ 149 GGGCTGGAGACAGAGCGGCACACAGCTTTAACAACCGCCGGACGAAGCGG 198
|.||.|.||||.|.|||||.||||||||...||||||.||.|||||.|||
RBAM_035810__ 149 GAGCGGAAGACCGGGCGGCGCACAGCTTCGGCAACCGGCGCACGAAACGG 198
BSNT_05909___ 199 ACTGAGATCATGTTTGCA-GAAGCTGGGCGGGTATATACATATGTGATGC 247
||.||.||.||| ||.|| ||.||.||.||..|.||||||||.||.||||
RBAM_035810__ 199 ACGGAAATTATG-TTCCATGAGGCGGGCCGCATTTATACATACGTCATGC 247
BSNT_05909___ 248 ACACCCATACATTGCTGAATGTCGTTGCCGCGGA-AGAGG-ATGTCCCGC 295
||||.||||||||..||||.|||||.|||||||| |..|| | |.||||
RBAM_035810__ 248 ACACTCATACATTAATGAACGTCGTCGCCGCGGACATCGGCA--TTCCGC 295
BSNT_05909___ 296 AAGCGGTATTAATCAGGGCGATTGAGCCGCATGAAGGCCAGCTGTTAATG 345
|.||.||.||||||||||||...|||||.||||||||.|||.|..|.|||
RBAM_035810__ 296 AGGCCGTGTTAATCAGGGCGGCGGAGCCTCATGAAGGACAGTTCCTGATG 345
BSNT_05909___ 346 GAGGAG-AGAAGGCCGGGCAGGAGTCCGAGGGAATGGACAAATGGACCCG 394
|| ||| ||.||.||||||||....|||||.||.||||||||.||.||.|
RBAM_035810__ 346 GA-GAGCAGGAGACCGGGCAGACACCCGAGAGAGTGGACAAACGGCCCGG 394
BSNT_05909___ 395 GAAAGCTGACAAAAGCGCTTGGCGTCACGATGAATGACTACGGACGCTGG 444
||||.|||||.||.|||.|.|||.|..|.|||||.||||||||..||..|
RBAM_035810__ 395 GAAAACTGACGAAGGCGATGGGCATTTCAATGAACGACTACGGCGGCATG 444
BSNT_05909___ 445 ATCACGGAACAGCCGCTTTACAT--CGAAAGCGGG-TACACACCGGAAGC 491
||||||||||.||||||.||.|| || |.||| |..||.||.| |||
RBAM_035810__ 445 ATCACGGAACCGCCGCTGTATATTACG---GAGGGCTTTACGCCTG-AGC 490
BSNT_05909___ 492 A-ATTTCAACCGGCCCGCGCATCGGCATTGACAACAGCGGGGAGGCACGC 540
| ||.|||||.||||||.|.|||||.||||||||||||||.||.||.||.
RBAM_035810__ 491 ATATATCAACAGGCCCGAGAATCGGGATTGACAACAGCGGAGAAGCCCGG 540
BSNT_05909___ 541 GATTATCCATGGCGTTTCTGGGTGACGGGAAACAGGTATGTGTCGCGTTA 590
||||||||.|||||.|..|||||||||||.|||.|||||||.||.||.|
RBAM_035810__ 541 GATTATCCGTGGCGCTATTGGGTGACGGGGAACCGGTATGTTTCACGCT- 589
BSNT_05909___ 591 G- 591
|
RBAM_035810__ 590 GA 591
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