Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05898 and RBAM_035750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:25
# Commandline: needle
# -asequence dna-align/BSNT_05898___ywaA.1.9828.seq
# -bsequence dna-align/RBAM_035750___ywaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05898___ywaA-RBAM_035750___ywaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05898___ywaA-RBAM_035750___ywaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05898___ywaA
# 2: RBAM_035750___ywaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1101
# Identity: 886/1101 (80.5%)
# Similarity: 886/1101 (80.5%)
# Gaps: 21/1101 ( 1.9%)
# Score: 3539.0
#
#
#=======================================
BSNT_05898___ 1 ATGACTAAACAA-ACGATTCGCGTTGAATTGACATCAACAAAAAAACCGA 49
||| |||||| || |||||.||||||||.||.|||.|.||||||||||
RBAM_035750__ 1 ATG---AAACAAGAC-ATTCGTGTTGAATTCACTTCAGCCAAAAAACCGA 46
BSNT_05898___ 50 AACCAGACCCAAATCAGCTTTCGTTCGGAAGAGTGTTTACAGACCACATG 99
||||.|||||..||.|.|||.|||||||.|||.|.||.||.|||||.|||
RBAM_035750__ 47 AACCGGACCCCCATGACCTTGCGTTCGGCAGAATTTTCACCGACCATATG 96
BSNT_05898___ 100 TTTGTAATGGACTATGCGGCAGATAAAGGTTGGTACGATCCAAGAATCAT 149
|||||.|||||.||.|..||.|||.||||.|||||.|||||.|||||.||
RBAM_035750__ 97 TTTGTTATGGATTACGACGCCGATCAAGGCTGGTATGATCCGAGAATTAT 146
BSNT_05898___ 150 TCCTTATCAGCCCTTATCAATGGATCCGGCCGCAATGGTCTATCACTACG 199
|||.||||||.||.|.|||||||||||.||.||.|||||.|||||.||||
RBAM_035750__ 147 TCCCTATCAGTCCATCTCAATGGATCCTGCGGCCATGGTTTATCATTACG 196
BSNT_05898___ 200 GCCAAACCGTGTTTGAAGGG-TTAAAGGCTTACGTGTCAGAGGATGACCA 248
||||||||||.||||||||| ||||| ||.||.||..|..|||||.|..|
RBAM_035750__ 197 GCCAAACCGTTTTTGAAGGGCTTAAA-GCGTATGTAACGAAGGATCAGGA 245
BSNT_05898___ 249 TGTTCTGCTTTTCAGACCGGAAAAAAATATGGAACGCCTGAATCAATCAA 298
.||.||.||.|||||||||||.|||||||||||.||||||||.||.||||
RBAM_035750__ 246 AGTGCTTCTGTTCAGACCGGAGAAAAATATGGAGCGCCTGAACCAGTCAA 295
BSNT_05898___ 299 ACGACCGCCTCTGCATCCCGCAAATTGATGAAGAACAGGTTCTTGAAGGC 348
|.||||||||.||||||||||..|||||||||||.|..||||||||||||
RBAM_035750__ 296 ATGACCGCCTTTGCATCCCGCTCATTGATGAAGAGCTTGTTCTTGAAGGC 345
BSNT_05898___ 349 TTAAAGCAGCTTGTCGCAATTGATAAAGACTGGATTCCAAATGCGGAGGG 398
.|.||.|||||.||.||.||.||.||||||||||||||.||.|||||.||
RBAM_035750__ 346 CTGAAACAGCTCGTAGCCATCGACAAAGACTGGATTCCGAAAGCGGAAGG 395
BSNT_05898___ 399 CACGTCCCTTTACATCCGTCCGTTCATCATCGCAACCGAGCCTTTCCTTG 448
|||.||||||||.|||||||||||.|||||.||.||.|||||||||||.|
RBAM_035750__ 396 CACTTCCCTTTATATCCGTCCGTTTATCATTGCGACTGAGCCTTTCCTCG 445
BSNT_05898___ 449 GTGTTGCGGCATCTCATACGTATAAGCTCTTGATCATTCTTTCTCCGGTC 498
||||.||||||||.||||||||.|||||.||.|||||||||||.||||||
RBAM_035750__ 446 GTGTAGCGGCATCCCATACGTACAAGCTGTTTATCATTCTTTCCCCGGTC 495
BSNT_05898___ 499 GGCTCTTATTACAAAGAAGGCATTAAGCCGGTCAAAATCGCTGTTGAAAG 548
||||||||||||||||||||||||||.|||||.||||||||.||.||||.
RBAM_035750__ 496 GGCTCTTATTACAAAGAAGGCATTAAACCGGTAAAAATCGCCGTGGAAAA 545
BSNT_05898___ 549 TGAATTTGTCCGTGCGGTAAAAGGCGGAACAGGAAATGCCAAAACCGCAG 598
.|||||.||.||.||.||.||||||||.||.|||||.||.||||||||.|
RBAM_035750__ 546 CGAATTCGTGCGCGCCGTCAAAGGCGGCACCGGAAACGCGAAAACCGCCG 595
BSNT_05898___ 599 GAAACTATGCTTCAAGCTTAAAAGCGCAGCAGGTCGCCGAAGAGAAAGGA 648
|.|||||.||.||||||.|.||||||||||||||.||.||.|||||.|||
RBAM_035750__ 596 GCAACTACGCATCAAGCCTGAAAGCGCAGCAGGTTGCGGAGGAGAAGGGA 645
BSNT_05898___ 649 TTTTCCCAAGTGCTCTGGCTGGACGGCATTGAGAAGAAATACATCGAAGA 698
||||||||.||..|.|||||.||||||||||||||.||||||||||||||
RBAM_035750__ 646 TTTTCCCAGGTTTTATGGCTTGACGGCATTGAGAAAAAATACATCGAAGA 695
BSNT_05898___ 699 AGTCGGAAGCATGAACATCTTCTTCAAAATCAACGGTGAAATCGTAACAC 748
||||||.|||||||||||||||||||||||||.|||.||||||||.||.|
RBAM_035750__ 696 AGTCGGCAGCATGAACATCTTCTTCAAAATCAGCGGCGAAATCGTGACGC 745
BSNT_05898___ 749 CGATGCTGAACGGGAGCATCCTGGAAGGCATTACGCGCAATTCAGTCATC 798
||..|||||||||.|||||.||.|||||.||||||.|.|||||.||||||
RBAM_035750__ 746 CGGAGCTGAACGGAAGCATTCTTGAAGGAATTACGAGAAATTCCGTCATC 795
BSNT_05898___ 799 GCCTTGCTTAAGCATTGGGGCCTTCAAGTTTCAGAACGAAAAATTGCGAT 848
.||.|.||.||.||||||||.||....||.||.||.||.||.|||.||||
RBAM_035750__ 796 ACCCTTCTCAAACATTGGGGACTGACTGTGTCTGAGCGGAAGATTTCGAT 845
BSNT_05898___ 849 CGATGAGGTCATCCAAGCCCATAAAGACGGC--ATCCTGGAAGAAGCCTT 896
||||||..||||.||.||.|||...|||||| || ||||||||.|.||
RBAM_035750__ 846 CGATGAAATCATTCAGGCGCATCGTGACGGCCGAT--TGGAAGAAACATT 893
BSNT_05898___ 897 CGGAACAGGTACAGCAGCTGTTATTTCCCCAGTCGGCGAGCTGATCTGGC 946
||||||.|||||.||.||.||.|||||.||.||||||||.|||||||||.
RBAM_035750__ 894 CGGAACCGGTACGGCGGCGGTCATTTCTCCGGTCGGCGAACTGATCTGGA 943
BSNT_05898___ 947 AGGATGAAACACTT-TCGATCAACAACGGTGAAACAGGAGAAATCGCAAA 995
|.|||||||..||| || |||..||.|||||||||.|||||.|||.|.||
RBAM_035750__ 944 ATGATGAAAGTCTTGTC-ATCGGCAGCGGTGAAACCGGAGAGATCTCGAA 992
BSNT_05898___ 996 AAAACTATATGACACGATTACAGGCATTCAAAAAGGCGCTGTCGCAGACG 1045
.|||.|.||.||.||.|||||||||||||||||||||||.|..||.||||
RBAM_035750__ 993 GAAATTGTACGATACCATTACAGGCATTCAAAAAGGCGCGGAAGCCGACG 1042
BSNT_05898___ 1046 AATTCGGATGGACGACCGAAGTCGCAGCGCTGACT----GAAAGCAAGTA 1091
..|||||.||||||||.|||||||| ||.||| ||||..||.||
RBAM_035750__ 1043 TGTTCGGCTGGACGACGGAAGTCGC----CTCACTAAGCGAAACAAAATA 1088
BSNT_05898___ 1092 A 1092
|
RBAM_035750__ 1089 A 1089
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