Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05895 and RBAM_035740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:24
# Commandline: needle
# -asequence dna-align/BSNT_05895___dltD.1.9828.seq
# -bsequence dna-align/RBAM_035740___dltD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05895___dltD-RBAM_035740___dltD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05895___dltD-RBAM_035740___dltD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05895___dltD
# 2: RBAM_035740___dltD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1197
# Identity: 885/1197 (73.9%)
# Similarity: 885/1197 (73.9%)
# Gaps: 36/1197 ( 3.0%)
# Score: 3132.0
#
#
#=======================================
BSNT_05895___ 1 ATGAAAAAGCGTTTTTTCGGTCCAATTATTTTGGCGTTTATTCTATTCGC 50
||||||||||||||.||.||.|||||||||||.|||||..|.||.||.|.
RBAM_035740__ 1 ATGAAAAAGCGTTTCTTTGGACCAATTATTTTAGCGTTCGTCCTGTTTGT 50
BSNT_05895___ 51 AGGCGCCATCGCAATTCCATCTTCATGGCTGACAGGCTTCATCACCGATA 100
.||.||.||||||.||||..||||||||||.||..|||||||..|.||.|
RBAM_035740__ 51 CGGAGCTATCGCAGTTCCGGCTTCATGGCTTACGCGCTTCATTCCTGAAA 100
BSNT_05895___ 101 AGCGTGTGAAAGAGTCAGCAACAGCCTTGAATCCGAGTATGTTTCAAGGG 150
|.|||||..|||||||.||..|||||||.|||||||.||||||.||.||.
RBAM_035740__ 101 AACGTGTCGAAGAGTCGGCGGCAGCCTTAAATCCGAATATGTTCCAGGGA 150
BSNT_05895___ 151 CTATATTTACAAGATCAGATGCTCAAAGATCCGACATATCTTCCGATTTA 200
||.|||.|.|||.|..|.|||.||.||||..|||..|||||.|||||||.
RBAM_035740__ 151 CTCTATCTTCAAAACAAAATGTTCGAAGACTCGAAGTATCTGCCGATTTT 200
BSNT_05895___ 201 CGGGTCTTCTGAGCTTTCTCGGCTGGACGAGTTCCACCCATCTAATTATT 250
|||.|||||.||||||||..|.|||||.|||||.|||||.||.||.||||
RBAM_035740__ 201 CGGTTCTTCCGAGCTTTCAAGACTGGATGAGTTTCACCCGTCCAACTATT 250
BSNT_05895___ 251 TTCAGGTAAACAATGAGGGATTCACGCCATACCTTGTCGGCAAAGGCGGA 300
|.||.||.|||||..|.||.||.|||||.||.||||||||.||||||||.
RBAM_035740__ 251 TCCAAGTGAACAACCAAGGCTTTACGCCTTATCTTGTCGGAAAAGGCGGG 300
BSNT_05895___ 301 TCCCAGTCATTGATTCATTCTTTAAACTTCGCTGCCCA-CATGGATCAGC 349
..|||.||.|||||.||..|..|.|||||.||.||.|| .|| .|.||||
RBAM_035740__ 301 GACCAATCCTTGATACACGCCGTGAACTTTGCGGCGCATTAT-CAGCAGC 349
BSNT_05895___ 350 TGAAGGGCAAAAAAATCGTATTCATCGTGTCTCCGCAATGGTTTATTAAG 399
||||.||||||||..|.||||||||.||.|||||||||||||||||.||.
RBAM_035740__ 350 TGAAAGGCAAAAAGCTGGTATTCATTGTTTCTCCGCAATGGTTTATCAAA 399
BSNT_05895___ 400 CGCGGGTCTGATGAACAGCATTTCGCGCCGAACTATTCTGCGCTGCAAGG 449
...||.||||||||||||||.||.||||||||.|.|||..|.||.|| |
RBAM_035740__ 400 AAAGGTTCTGATGAACAGCACTTTGCGCCGAATTTTTCATCACTTCA--G 447
BSNT_05895___ 450 GC--TTGATTTGGCATTTAACGATCAGATCGACCCTGAAATTAAAAAGAA 497
|| |.|||||.||||||||..|.|||||.||.||.|...|.||||||||
RBAM_035740__ 448 GCATTGGATTTAGCATTTAATAACCAGATTGATCCCGCGGTCAAAAAGAA 497
BSNT_05895___ 498 AATGATGAAACGCATGCTTCGCTTTAAGGCTGTGCAAAACGATGCCATTC 547
.||||||||.||||||||.||.|||||.|..||.||..|.||||||.|.|
RBAM_035740__ 498 CATGATGAAGCGCATGCTCCGTTTTAAAGTCGTTCAGCATGATGCCGTCC 547
BSNT_05895___ 548 TTTCTGAGCTGTACAAAGCAATGGTAAACGGCCAGACGTGGAAAGTGAAC 597
|||||||..|||||||.|.||||||.|||||.||..|.|||||||||||.
RBAM_035740__ 548 TTTCTGAATTGTACAAGGGAATGGTCAACGGACAATCATGGAAAGTGAAA 597
BSNT_05895___ 598 GCGCTGAAGCCGGCGGCGAAAGTGTATTA----CAGCATGCTGGAAAAGA 643
|||.|.|.||||||.||.||||..||||| | ||||.||.||.|
RBAM_035740__ 598 GCGGTCATGCCGGCTGCCAAAGCTTATTATTCTC----TGCTTGAGAAAA 643
BSNT_05895___ 644 AAGATCTGTATTATTCAACGACAGAATCATC-CGGGCC---AAAGCGCTA 689
|||||||.||||||||||.|..|||| |.| .||||| ||.|..|.|
RBAM_035740__ 644 AAGATCTTTATTATTCAATGGGAGAA--AACAAGGGCCCTGAACGGACGA 691
BSNT_05895___ 690 TATCTCGCAGTCAGTAAAGGATAAGTCATGGTCTGAATTGAATAAACTAG 739
|.|||...|..|.|.||.|| ||.||.|||||.||.||.||.|.|...|
RBAM_035740__ 692 TCTCTGAAAACCTGAAAGGG--AAATCGTGGTCAGAGTTAAAAACAGCCG 739
BSNT_05895___ 740 CGGATCAATCGGGCAAACGCCACTCCGGTTCTAACGATTTTCACATCGAC 789
|||.|||||..||..||||...||||...||.||...|||..|.|||||.
RBAM_035740__ 740 CGGCTCAATTAGGAGAACGGAGCTCCAAGTCCAATCCTTTCTATATCGAT 789
BSNT_05895___ 790 AACCCTGTC-TATAAAAAGCTGAAGCCGAAAGTGCCTAAG---CTGAAAG 835
.||.|| || |||||||||.|.|||..|||||| .||| .||||||
RBAM_035740__ 790 GACGCT-TCTTATAAAAAGATTAAGAAGAAAGT---AAAGAGAGTGAAAG 835
BSNT_05895___ 836 GGAAAAACAAAGGAAGATCGTATGCGGTGTCACCGGAATATGGCGACTTT 885
|.|..||||||||||||.|.||.||....|||...||||||..|||||||
RBAM_035740__ 836 GAATCAACAAAGGAAGAACATACGCCAAATCAGTCGAATATCACGACTTT 885
BSNT_05895___ 886 GA-AATGATGCTCGATATCCTGAAGGATGCGGGCGCAGAGCCTATGTTTG 934
|| .|| |||||.||.||.|||||.|||||.|||||.||.||.|||||.|
RBAM_035740__ 886 GAGGAT-ATGCTGGACATTCTGAAAGATGCCGGCGCTGAACCGATGTTCG 934
BSNT_05895___ 935 TCACCATTCCTGTTAACGGGAAATGGTACGATTACACGGGCTTCCCGAAA 984
|....|||||.||.|||||.||||||||.||.|||||.||||||||||||
RBAM_035740__ 935 TGGTTATTCCGGTCAACGGAAAATGGTATGACTACACCGGCTTCCCGAAA 984
BSNT_05895___ 985 AAAGGACGCACTGACTATTACAAAAAGGTAAATAAACAAATCAGAGCGAA 1034
|||||.||.|||||.||.||||||||.||.|.|||.|||||.|.||||||
RBAM_035740__ 985 AAAGGCCGGACTGATTACTACAAAAAAGTCACTAAGCAAATTAAAGCGAA 1034
BSNT_05895___ 1035 GGGTTTCCAGGTTGCTGATTTCTCAGGGCATGAATATGACCCGTATTTCA 1084
|||.||.||||||||.||.||.||.|||||.||||||||.|||||.||.|
RBAM_035740__ 1035 GGGCTTTCAGGTTGCCGACTTATCCGGGCACGAATATGATCCGTACTTTA 1084
BSNT_05895___ 1085 TGAAAGACACCATTCACATCGGCTGGAAAGGCTGGGTGTATGTCGATAAA 1134
|||||||||||||.||.||||.||||||.|||||||||||.|||||||||
RBAM_035740__ 1085 TGAAAGACACCATCCATATCGCCTGGAAGGGCTGGGTGTACGTCGATAAA 1134
BSNT_05895___ 1135 GCAATTGACGAATTTTATAAAACCGGAAAAGTCAC--TTCATCCTGA 1179
|||||.||..|.|||||.||||||||.||.||.|| |||| ||||
RBAM_035740__ 1135 GCAATGGAGCAGTTTTACAAAACCGGCAAGGTGACGGTTCA--CTGA 1179
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