Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05864 and RBAM_035630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:23
# Commandline: needle
# -asequence dna-align/BSNT_05864___ywbD.1.9828.seq
# -bsequence dna-align/RBAM_035630___ywbD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05864___ywbD-RBAM_035630___ywbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05864___ywbD-RBAM_035630___ywbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05864___ywbD
# 2: RBAM_035630___ywbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1204
# Identity: 905/1204 (75.2%)
# Similarity: 905/1204 (75.2%)
# Gaps: 32/1204 ( 2.7%)
# Score: 3260.5
#
#
#=======================================
BSNT_05864___ 1 ATGAAGCTACTCACCCT-AAAGAAAGCACACGCTGCCAAAATCAAAAAAG 49
|||||||||||.||..| |||||.| ||...||.|..||..|.|||||||
RBAM_035630__ 1 ATGAAGCTACTTACAGTGAAAGATA-CATTTGCCGGAAAGCTGAAAAAAG 49
BSNT_05864___ 50 GCTATCCCCTTATCGAAAAAGAAGCTCTCGCAGGGAGTGCGGGGCACATG 99
|.|..|||||.||.||||||||.|||||..|.||.||..|||..||..|.
RBAM_035630__ 50 GATTCCCCCTGATTGAAAAAGACGCTCTGTCCGGAAGCTCGGCTCATTTA 99
BSNT_05864___ 100 AAAGAAGGAGACATCGTTGATATCGTG---TCTGAGAGCGGCGAGTTTCT 146
|.|||.||.||..|..||||| ||| ||.||||..||.||||||.|
RBAM_035630__ 100 ACAGAGGGCGATCTTTTTGAT---GTGACATCCGAGAAGGGTGAGTTTAT 146
BSNT_05864___ 147 CGCGCGG----GGCTATTACGGCCTGCAAAATAAAGGGGTCGGCTGGACG 192
||| |||||||||||..||||.||||||||.|||||||||..|
RBAM_035630__ 147 ----CGGAAAAGGCTATTACGGTTTGCAGAATAAAGGAGTCGGCTGGGTG 192
BSNT_05864___ 193 CTTACCCGCAATAAACATGAACAGATTGACCAGG-CATTT-TTTCTCACC 240
||..|.|||...|.|.||||||.|||.||| || |.||| |||||...|
RBAM_035630__ 193 CTGTCACGCGCGAGAGATGAACGGATCGAC--GGACGTTTCTTTCTGGAC 240
BSNT_05864___ 241 AAATTAACAAAAGCGGCCCAAGCGCGCGCCAAACTATTTGAGGCTCAAGA 290
||..|.|.|||||||||..|||||.|.|||.|.||.|||.||||.|..||
RBAM_035630__ 241 AAGCTGAAAAAAGCGGCTGAAGCGAGAGCCCATCTGTTTAAGGCGCCCGA 290
BSNT_05864___ 291 TACAACGGCTTTCCGCCTGTTTAACGGTGAGGGCGACGGTGTCGGCGGCG 340
.||.|||||.|||||.|||||.|||||||||||||||||..|||||||||
RBAM_035630__ 291 CACGACGGCGTTCCGGCTGTTCAACGGTGAGGGCGACGGCATCGGCGGCG 340
BSNT_05864___ 341 TCACCATCGACTATTATGACGGCTACCTGCTGGTACAATGGTACAGCAAG 390
||||.||.||||.||||||.||.||.||||||.|.|||||||||||.||.
RBAM_035630__ 341 TCACGATTGACTTTTATGATGGTTATCTGCTGATTCAATGGTACAGTAAA 390
BSNT_05864___ 391 GGCATTTACACCTTTAAAGATATGC-TAATTTCCGCTTTGGATGAGA-TG 438
|||||||||.|.|.|||.||.| || |.|||...||..|.||.| || ||
RBAM_035630__ 391 GGCATTTACGCTTATAAGGACA-GCATGATTGAGGCGATTGACG-GACTG 438
BSNT_05864___ 439 GATCTTGATTATAAAGCGATTTACGAGAAAAAACGCTTCGACACAGCTGG 488
||.|||..||||||||||||.|||||.||.|||||.|||||.||.||.||
RBAM_035630__ 439 GAGCTTTCTTATAAAGCGATCTACGAAAAGAAACGATTCGATACGGCCGG 488
BSNT_05864___ 489 ACAATACGTTGAAGATGATGACTTCGTGAAAGGGAAAAGAGGCGAGTTCC 538
.||||||||.|||||.||.||.||.||.|||||..|||||||.||.||.|
RBAM_035630__ 489 GCAATACGTGGAAGACGACGATTTTGTCAAAGGCGAAAGAGGAGATTTTC 538
BSNT_05864___ 539 CGATCATCATCCAGGAGAATGGCATTCAATACGCGGTGGATTTGAATGAA 588
||.||||..|.||.||.||.|||||.|..||||||||||||||.||.||.
RBAM_035630__ 539 CGGTCATTGTTCAAGAAAACGGCATACGGTACGCGGTGGATTTAAACGAC 588
BSNT_05864___ 589 GGCGCCATGACGGGCATCTTTTTGGATCAGAGACATGTGCGCAAGGCGAT 638
||.||.|||||||||||.||.||.||.|||.|.|||||||||||.|||||
RBAM_035630__ 589 GGGGCGATGACGGGCATTTTCTTAGACCAGCGTCATGTGCGCAAAGCGAT 638
BSNT_05864___ 639 CAGAGACCGCTATGCAAAAGGGAAAACCGTTTTAAATACATTTTCTTATA 688
..|.|||...||||||||.||.|.|...||..|.|||||.||.|||||||
RBAM_035630__ 639 TCGGGACAAGTATGCAAACGGCAGACGGGTGCTGAATACGTTCTCTTATA 688
BSNT_05864___ 689 CGGGTGCATTCTCCGTGGCAGCGGCGCTTGGCGGAGCGGAGAAAACAACA 738
||||.|||||.|||||.||.|||||||||||||||||.||||||||.||.
RBAM_035630__ 689 CGGGGGCATTTTCCGTTGCGGCGGCGCTTGGCGGAGCTGAGAAAACGACC 738
BSNT_05864___ 739 AGCGTCGACGTGGCAAACCGAAGTCTGGCCAAAACGATCGAGCAATTCAG 788
||||||||.||.||.|||||.|||||.||.||||||||.||.||.|||||
RBAM_035630__ 739 AGCGTCGATGTCGCCAACCGCAGTCTCGCAAAAACGATTGAACAGTTCAG 788
BSNT_05864___ 789 CGTGAAC--AAGCTGGATTACGAAGCGCACGACATTAAAGTGATGGACGT 836
||..||| || |.|||||.||.|||||.|||||||||||.|||||.||
RBAM_035630__ 789 CGCCAACGGAA--TTGATTATGAGGCGCATGACATTAAAGTCATGGATGT 836
BSNT_05864___ 837 TTTTAATTATTTTTCATATGCTGA-AAAAAAGGATTTGCGCTTTGATCTG 885
|||.||.||.||....|||||.|| ||||||||..|.|.| |||||.||.
RBAM_035630__ 837 TTTCAAATACTTCGGCTATGCGGAGAAAAAAGGGCTGGAG-TTTGACCTC 885
BSNT_05864___ 886 ATTATTCTCGATCCGCCTTCCTTTGCGCGCACAAAAAAACGCACCTTCAG 935
||.||.||.|||||||||||.||.||.||||||||||||||.||.|||||
RBAM_035630__ 886 ATCATCCTTGATCCGCCTTCTTTCGCCCGCACAAAAAAACGGACGTTCAG 935
BSNT_05864___ 936 CGCGGCCAAGGATTATAAAAACCTGCTGAAGGAAACGATCGCCATCACTG 985
||||||.||.|||||||||||.||||||||||||||||||||||||||.|
RBAM_035630__ 936 CGCGGCGAAAGATTATAAAAATCTGCTGAAGGAAACGATCGCCATCACCG 985
BSNT_05864___ 986 CTGACAAGGGTGTCATTGTTGCCTCTACAAACAGCAGCGCATTTGGCATG 1035
|..|.||.||..||||.||.||.||.||||||||||||||.||....|||
RBAM_035630__ 986 CAAAAAACGGCATCATCGTCGCTTCGACAAACAGCAGCGCCTTCAATATG 1035
BSNT_05864___ 1036 AAGAAATTCAAAGGCTTTATCGATGCCGCATTTAAAGAAACAAACGAACG 1085
||||||||.|||||||||||.||..||||.||||||||||||||.||.||
RBAM_035630__ 1036 AAGAAATTTAAAGGCTTTATAGAGACCGCCTTTAAAGAAACAAATGAGCG 1085
BSNT_05864___ 1086 CTACACCATCATTGAGGAATTTACGCTGCCGAAGGATTTCAAAACGATTT 1135
.|||..|||..|.||.||||..|||||.|||.|.|||||||||||||||.
RBAM_035630__ 1086 TTACGACATTTTGGAAGAATACACGCTTCCGGAAGATTTCAAAACGATTC 1135
BSNT_05864___ 1136 CGGCATTTCCGGAAGGCAACTACCTGAAAGTGGTCCTTC-TGCAGAAAAA 1184
|.||.|||...|||||.|||||..||||.||.|| .||| |||.||||||
RBAM_035630__ 1136 CCGCGTTTAAAGAAGGGAACTATTTGAAGGTTGT-TTTCTTGCGGAAAAA 1184
BSNT_05864___ 1185 GTAA 1188
.||.
RBAM_035630__ 1185 ATAG 1188
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