Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02059 and RBAM_035620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02059___yjfC.1.9828.seq
# -bsequence dna-align/RBAM_035620.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02059___yjfC-RBAM_035620.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02059___yjfC-RBAM_035620.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02059___yjfC
# 2: RBAM_035620
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity: 610/977 (62.4%)
# Similarity: 610/977 (62.4%)
# Gaps: 151/977 (15.5%)
# Score: 1775.0
#
#
#=======================================
BSNT_02059___ 1 ---------ATGAATCTTGTCATGGAAAAGACCTTTGAGCAATACGAAAA 41
||.||..|..|.||.||..|.||..|||.|||||||||||.
RBAM_035620 1 GTGGTACCCATTAAAATCATTATCGAGGATACAATTGGGCAATACGAAAC 50
BSNT_02059___ 42 GCTGTTTTCAATGAAAGAACAGAAAAGAGAAGATGAATTTCGGTATACGA 91
|.|.||||||||||..||| ||.|||||||||.|.|.|||||||.|.|
RBAM_035620 51 GTTATTTTCAATGATTGAA---AATAGAGAAGATTATTATCGGTATTCAA 97
BSNT_02059___ 92 TGATGAGGCCGTTTGAAAAGATGTGGACCGCCATCCAAGTTCCGCTGAAA 141
||||||..||.||||||.|.|||||||.....||..|.||||| ||.|||
RBAM_035620 98 TGATGAAACCTTTTGAAGATATGTGGAAAAAGATGAATGTTCC-CTTAAA 146
BSNT_02059___ 142 -GCGAAGGAGCCAAACGGCTATGATGTGATCATGGCTGCGAAAATGCTGG 190
||.|||.|.||.|||||.||||||||.|||||||||||.||.|||||||
RBAM_035620 147 GGCAAAGCAACCTAACGGATATGATGTAATCATGGCTGCAAATATGCTGG 196
BSNT_02059___ 191 GCTATTT--GGATGTCCGTGATGCTGAAAGCGGGCAG-AAAGCACT-GCA 236
|||||.| |.||.| .||||.|.|||| |.||.|| ||||||.| |..
RBAM_035620 197 GCTATCTGAGCATAT--TTGATACGGAAA-CCGGAAGAAAAGCATTAGAG 243
BSNT_02059___ 237 AATACTGAAAGAATCACATGTTTCAGAGACAGCTGAGTCTGCACTTCGGC 286
||| ||.|||||| .|||| |||| ||| |
RBAM_035620 244 AAT-CTAAAAGAA-------ATTCA-----AGCT---------CTT---C 268
BSNT_02059___ 287 AA--TGCATAT-----TTT------TTGCTG------------------A 305
|| ||||||| ||| ||| || |
RBAM_035620 269 AAATTGCATATGGCACTTTAACTCATTG-TGTAGAATTTATCCAACAAAA 317
BSNT_02059___ 306 GCGC--GAACAGCTGCGGGTGAATGCAGAGGAGATCAAATTCGGCCTTTA 353
.||| .||.| |.|||||.||.||.||.|..||.||..|.||
RBAM_035620 318 CCGCTTAAAAA--------TAAATGCTGATGAAATAAGGTTTGGGATGTA 359
BSNT_02059___ 354 TATCGCTGATCCAAATAAACTTCAGCTGCAAAAAGGCTACTGCGGGTTTG 403
|.|.||..|||.|||.||.|||.||.|.||.|.|||.||.||.||.||.|
RBAM_035620 360 TTTGGCCAATCAAAAAAAGCTTGAGTTACATAGAGGGTATTGTGGATTCG 409
BSNT_02059___ 404 GCGGGATACCGGGCTTTATTCATGTATGGATTGAT--CCGAACCGTTATA 451
|.||.||.|||||.||||||||.||.|..|| || ||.||....||||
RBAM_035620 410 GAGGAATTCCGGGATTTATTCAAGTTTCAAT--ATTCCCCAATTCATATA 457
BSNT_02059___ 452 ACCTGCCAAGGATTCCTTCCATTATTGCTCATGAGTTTCATCATAATGTG 501
||.|.||.||..|.|||.|..|.||.||.||.||.||||||||||||.|.
RBAM_035620 458 ACATACCGAGACTGCCTGCTGTAATCGCACACGAATTTCATCATAATATT 507
BSNT_02059___ 502 CGGTTTTCGTATATAGATTTTCATCATGGCTCTGTAAGTGTCGGGGATTA 551
||.|||||.|||.|..|||...|..||||....||||..||.||.|||||
RBAM_035620 508 CGTTTTTCTTATTTCAATTGGGACTATGGGAACGTAACGGTTGGTGATTA 557
BSNT_02059___ 552 TCTT-GTGATTGAAGGATTGGCGGAATCATTCGCCAGAGAGCTGTTTGGT 600
||| .|.||.||.||.|||||.|||||.||.||||.|||.|| .|
RBAM_035620 558 -CTTAATTATAGAGGGGTTGGCAGAATCGTTTGCCAAAGAACT-----TT 601
BSNT_02059___ 601 ACGGAACGA-------TTGGGCCCTTGGGTAACTCGTTTTGATCATGAGG 643
||||| || ||.||.||||||||.|||..||||||..|.||.|
RBAM_035620 602 ACGGA--GAAGCTCTGTTAGGTCCTTGGGTTACTTCTTTTGAAAAAGAAG 649
BSNT_02059___ 644 ACTTGCAATATTCCATTGATGTGATTAATGAGGTGCTGG----ATGTGAA 689
||||..||||.||.|..||..|.||.||.|| ||.| ||..|||
RBAM_035620 650 ACTTAGAATACTCAAAAGAAATCATCAAAGA----CTCGTTAAATAAGAA 695
BSNT_02059___ 690 AGGATTTTCGGAAGTCAGCCGTTATATGTTTGGTGATCCAATTGCTAACG 739
|||.|||.|.||.||||||.||||.|||||||||||..|..||||...||
RBAM_035620 696 AGGGTTTGCTGAGGTCAGCAGTTACATGTTTGGTGACACCTTTGCAGCCG 745
BSNT_02059___ 740 ATCAAGGCTTTAAGCCTGCTGGTTTATCGGCTTTTGCAGGTTATGCAGTT 789
|.|||||.|.|.||||||..||.|||||..|.||||||||||||||.|||
RBAM_035620 746 AACAAGGTTATCAGCCTGTCGGCTTATCACCGTTTGCAGGTTATGCGGTT 795
BSNT_02059___ 790 GGCTATCATGCCGTTCAGTCATTTATGAA--TCAACATCACATGACGATA 837
|||||.||.||.||.||.||.||.||||| .||||| |..||..|||.
RBAM_035620 796 GGCTACCAAGCGGTGCAATCCTTCATGAAAGCCAACA--ATGTGGGGATT 843
BSNT_02059___ 838 AGCGAGGCCACGCGTTT---------GGATGCGAAGACCATTCTTTCTCA 878
||.|||||||| ||| .||||.|| |.||.|
RBAM_035620 844 AGTGAGGCCAC---TTTACTTGGCACAGATGAGA----------TACTAA 880
BSNT_02059___ 879 GT----GCGGATTGTTT-TCCAAATGA 900
|| ||||.|||||| |..||
RBAM_035620 881 GTAATAGCGGGTTGTTTCTTTAA---- 903
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