Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05857 and RBAM_035560

See Amino acid alignment / Visit BSNT_05857 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:22
# Commandline: needle
#    -asequence dna-align/BSNT_05857___thiM.1.9828.seq
#    -bsequence dna-align/RBAM_035560___thiM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05857___thiM-RBAM_035560___thiM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05857___thiM-RBAM_035560___thiM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05857___thiM
# 2: RBAM_035560___thiM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity:     548/850 (64.5%)
# Similarity:   548/850 (64.5%)
# Gaps:         119/850 (14.0%)
# Score: 1796.5
# 
#
#=======================================

BSNT_05857___      0 --------------------------------------------------      0
                                                                       
RBAM_035560__      1 ATGGACGCACAAACCGCAGCTCAACACTTGAGTAAAGTGCGGGATCAAAA     50

BSNT_05857___      1 -------GTGCATAGCATAACCAACAATGTCGTAACGAATTTCACAGCAA     43
                            ||.||.||.||.|||||.||||||||.|||||.|||||.||.|
RBAM_035560__     51 CCCGCTCGTTCACAGTATCACCAATAATGTCGTCACGAACTTCACCGCTA    100

BSNT_05857___     44 ACGGCCTGCTCGCGCTCGGCGCATCGCCCGTTATGGCGTACGCAAAAGAA     93
                     ||||.|||||.||||||||||||||||||||||||||.||.||||..||.
RBAM_035560__    101 ACGGACTGCTTGCGCTCGGCGCATCGCCCGTTATGGCTTATGCAATTGAG    150

BSNT_05857___     94 GAGGTCGCCGATATGGCGAAAATTGCGGGTGCACTCGTTTTAAATATCGG    143
                     ||||..|||||.|||||||||||.||.||.||.|||||..|.|||||.||
RBAM_035560__    151 GAGGCAGCCGACATGGCGAAAATCGCAGGAGCGCTCGTCCTGAATATAGG    200

BSNT_05857___    144 AACGCTGAGCAAGGAGTCAGTCGAAGCGATGATCATCGCGGGAAAATCAG    193
                     .||.||.||...||.|||.||.|||||.||||||...||.||||||||.|
RBAM_035560__    201 CACCCTCAGTTCGGCGTCGGTTGAAGCTATGATCGCAGCCGGAAAATCGG    250

BSNT_05857___    194 CTAATGAACATGGCGTTCCCGTCATTCTTGATCCTGTCGGTGCCGGAGCA    243
                     |.||||||.|.||.|||||.||||||.|||||||.||.||.||.||.||.
RBAM_035560__    251 CCAATGAAAACGGTGTTCCGGTCATTTTTGATCCGGTAGGCGCAGGCGCC    300

BSNT_05857___    244 ACACCGTTCCGCACTGAATCGGCACGTGACATCATTCGTGAGGTGCGCCT    293
                     ||.|||||.||.||.|.|||.||..|..|.|||||.|..|||||.|| ||
RBAM_035560__    301 ACGCCGTTTCGGACGGCATCAGCCAGCAAGATCATACAGGAGGTCCG-CT    349

BSNT_05857___    294 TG-CTGCAATCAGAGGAAATGCGGCGGAAATTGCCCATACCGTCGGCGTG    342
                     || |.||.||..|.||||||||.||||||||.|||.|||..|.|||||..
RBAM_035560__    350 TGTCCGCCATTCGCGGAAATGCCGCGGAAATCGCCAATATAGCCGGCGCC    399

BSNT_05857___    343 ACCGACTGGCTGATCAAAGGTGTTGATGCGGGTGAAGGCGGAGGCGACAT    392
                     .|.||.|||..|||.|||||.||.||||||||.||||.||||||.||..|
RBAM_035560__    400 CCTGATTGGAAGATAAAAGGCGTGGATGCGGGGGAAGCCGGAGGAGATGT    449

BSNT_05857___    393 CATCCGGCTGGCTCAGCAGGCGGCACAAAA----GCTAAACACGGTCATT    438
                     ..|.|.|||.|||.||..|||.||    ||    |||.||.|||||||||
RBAM_035560__    450 GGTTCAGCTCGCTAAGACGGCTGC----AAGCGGGCTGAAGACGGTCATT    495

BSNT_05857___    439 GCGATAACTGGTGAAGTTGATGTCATAGCCGAC----ACGTCACATGTAT    484
                     |||||.||.||..||...||.|||||..|||||    .||.|||    ||
RBAM_035560__    496 GCGATTACCGGAAAAACCGACGTCATCTCCGACGGCGCCGACAC----AT    541

BSNT_05857___    485 ACACCCTTCATAACGGCCACAAGCTGCTGACAAAAGTGACAGGCGCCGGT    534
                     |..||.|.||||||||..|.||.||||||||.||.|||||.||.||.||.
RBAM_035560__    542 ATGCCGTACATAACGGTGATAAACTGCTGACGAAGGTGACGGGGGCGGGA    591

BSNT_05857___    535 TGCCTGCTGACTTCCGTCGTCGGTGCGTTTTGCGCTGTGG---AAGAAAA    581
                     |||||||||||.||.||..||||.||.||.|||||.|.||   |.||   
RBAM_035560__    592 TGCCTGCTGACGTCTGTAATCGGAGCCTTCTGCGCAGCGGGGCAGGA---    638

BSNT_05857___    582 TCCATTGTTTGCTGCTATTGTTGCCATTTC------TTCT---TATGGGG    622
                          .|||  ||||.|  |..|||.||||      ||||   ||.||..
RBAM_035560__    639 -----CGTT--CTGCAA--GCGGCCGTTTCAGCCGTTTCTGTATACGGAA    679

BSNT_05857___    623 TCGCCGCTCAGCTTGCCGCAAAGCAGACGGCTGACC----AAGGCCCTGG    668
                     .||||||||||||||||||...|  |||..||  ||    |.||.||.||
RBAM_035560__    680 GCGCCGCTCAGCTTGCCGCTCTG--GACACCT--CCCATAAGGGGCCGGG    725

BSNT_05857___    669 AAGCTTTCAGATTGAATTGCTGAACAAGCTTTCAA----CTGTTACTGAA    714
                     .|||||.||||||||..|..|.||||||||..|||    ||    |.|||
RBAM_035560__    726 CAGCTTCCAGATTGAGCTTTTAAACAAGCTGGCAAGCATCT----CAGAA    771

BSNT_05857___    715 CAAGA--CGTCCAAGAATGGGCGACTATAGAAAGGGTGACTGTCTCATGA    762
                     |||||  ||.||.||..|  ||..|.||.||||||||||..|....||||
RBAM_035560__    772 CAAGAAGCGGCCGAGCTT--GCCGCAATTGAAAGGGTGATAGAAAAATGA    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05857 and RBAM_035560

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
