Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05856 and RBAM_035550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:22
# Commandline: needle
# -asequence dna-align/BSNT_05856___thiE.1.9828.seq
# -bsequence dna-align/RBAM_035550___thiE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05856___thiE-RBAM_035550___thiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05856___thiE-RBAM_035550___thiE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05856___thiE
# 2: RBAM_035550___thiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 693
# Identity: 488/693 (70.4%)
# Similarity: 488/693 (70.4%)
# Gaps: 42/693 ( 6.1%)
# Score: 1615.0
#
#
#=======================================
BSNT_05856___ 1 ATGACTCGTATTTCTCGGGAAATGATGAAAGAGTTATTATCTGTTTACTT 50
|||||.|||||||||||||||||||||||.||..|.|||||.|||||.||
RBAM_035550__ 1 ATGACGCGTATTTCTCGGGAAATGATGAAGGATATGTTATCGGTTTATTT 50
BSNT_05856___ 51 CATTATGGGGTCAAATAATACGAAAGCCGATCCTGTTACAGTTGTACAAA 100
.||||||||.|||||.|||||.|..||.||.||.|||.|.||.||..|||
RBAM_035550__ 51 TATTATGGGATCAAACAATACAAGCGCAGACCCCGTTTCTGTGGTGGAAA 100
BSNT_05856___ 101 AAGCGTTAAAAGGCGGTGCCACCCTGTACCAGTTCCGTGAAAAAGGCGGG 150
||||..|..|.|||||.||.||.||.|..||.||.||.||||| |||
RBAM_035550__ 101 AAGCCATTGAGGGCGGCGCTACGCTTTTTCAATTTCGGGAAAA----GGG 146
BSNT_05856___ 151 GATGCG-----CTGACAGGAGAGG-----CTCGGATT---GAATTTGCTG 187
|| ||| .|.|||||.|||| |||...|| ||| ||.|
RBAM_035550__ 147 GA-GCGGTTCTTTAACAGGGGAGGAACGTCTCCTGTTCGCGAA---GCGG 192
BSNT_05856___ 188 AAAAAGTGCAGGCAGCCTGCCGTGAAGCCGGTGTTCCGTTCATTGTCAAT 237
|||||||..|.||||.|..|.|||||..||||.|||||..|.|||
RBAM_035550__ 193 -----GTGCAGGATGTCTGCAGGCAGGCCGGGATTCCTTTCATCATTAAT 237
BSNT_05856___ 238 GATGATGTGGAATTGGCTCTGAAGCTGAAAGCTGACGGTATCCACATCGG 287
||||||||.||||||||..||...||..|.||.|||||..|.||.|||||
RBAM_035550__ 238 GATGATGTCGAATTGGCCTTGCGCCTTGAGGCGGACGGAGTGCATATCGG 287
BSNT_05856___ 288 CCAGGAAGACGCAAACGCGAAAGAGGTAAGAGCTTCCATAGGTGATATGA 337
.|||||.||||||.||||..||||....|||||..|.||.||.|||||||
RBAM_035550__ 288 GCAGGATGACGCAGACGCCGAAGAAACGAGAGCGGCAATCGGCGATATGA 337
BSNT_05856___ 338 TTCTCGGCGTTTCTGCTCATACGATGTCT--GAGGTGAAGCAAGCTGAAG 385
|||||||.||.||.||.|||| |.|||| ||||||||||..||.||||
RBAM_035550__ 338 TTCTCGGTGTGTCAGCACATA--ACGTCTCCGAGGTGAAGCGGGCGGAAG 385
BSNT_05856___ 386 AAGACGGAGCGGATTATGTCGGGCTTGGGCCGATCTATCCGACTGAAACG 435
..|.||||||.|||||.|||||..|.||.|||.||||||||||.|||||.
RBAM_035550__ 386 CCGCCGGAGCCGATTACGTCGGAATGGGCCCGGTCTATCCGACCGAAACA 435
BSNT_05856___ 436 AAAAAAGATAC-GAGAGCGGTACAAGGGGTATCTCTTATTGAAGCAGTTC 484
|||||||||.| || |||.||.||.||.||..|..|.|||||||..||.|
RBAM_035550__ 436 AAAAAAGATGCTGA-AGCCGTGCAGGGCGTTACATTGATTGAAGAGGTGC 484
BSNT_05856___ 485 GCCGCCAAGGCATCAGCATTCCAATTGTCGGCATCGGCGGCATCACAATA 534
|.||.||.|||||||.||||||.|||||.||.|||||||||||.||....
RBAM_035550__ 485 GGCGTCAGGGCATCACCATTCCGATTGTAGGAATCGGCGGCATTACGGCT 534
BSNT_05856___ 535 GATAATGCCGCACCTGTTATCCAAGCGGGGGCCGATGGTGTCAGTATGAT 584
||.||.||.||.||.||.||..|||||||.||.||.||.|||||.|||||
RBAM_035550__ 535 GACAACGCGGCGCCCGTCATTGAAGCGGGTGCAGACGGCGTCAGCATGAT 584
BSNT_05856___ 585 CAGCGCCATAAGTCAGGCGGAGGATCCTGAGAG-TGCTGCACGCAAGTTT 633
|||||||||.||.||.||.||.||||| .|.|| .||.||.||.||||||
RBAM_035550__ 585 CAGCGCCATCAGCCAAGCCGAAGATCC-AAAAGCGGCGGCGCGGAAGTTT 633
BSNT_05856___ 634 CGGGAGGAAATTCAAACG-TATAAAACAGG------AAGATAA 669
...|||||||||| ..|| |..|||.|||| ..||||.
RBAM_035550__ 634 TCAGAGGAAATTC-GGCGCTCCAAAGCAGGGCTGTCCCGATAG 675
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